Rw2G053240

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015330
Physical Location & Seq
Reverse (-)
81054836 .. 81055596
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053240.1

Sequence Viewer

Length: 702 bp
ATGGAGACCCAAAATCTTCAAACCCTTCCAGTACCTCATGATTACCACGCCAATGTTGACAGTTCACGACCCTTCCGCTCCGTCAAGGAAGCTGTTGCGTCTTTGGAGAGCGGCTTCTCCTCGGAGAAAGTAGAAACTTCTTCACCAAGGAACAAGTCTGTCATCTCATCACCAAGTACTAGTGCTGATCCACATAGTAAAGAAAGTGATAATGTTTTGGATAGTCTCAAGAAACTTGAGGCTGAGCTTGAGGAAACAAAGGTGGAGTTGAAGATGCTCAAGGAGAGAGAGTCCGAAACCGAGGTGGCCTTGGCAACCTTGAATGCAGAGCTTCACAAGAACATGTCCAAGCTGGCTCAGGCTGAGGCGGCCGCAGCAGCAAAAGCAGCGGCTAGTAGTGATCACCATGTTATCAGTTCGATGAGATCAAATTCGGAGGAAGCAGAGAAGAGTGTTAAGAAGGATCAGTGGTCGATGATAAGGATGGAGGACACTACTACTTTGGCTCAGATATTAAGCATTAGTTCTCAACATGAGAATCAAGGTGGTTATTATGGGAGCGGAGGAAAAAGAGAGAGGAATTATAAGATGATGAAGAAGAAGCCTATTGTTCCTCTTCTGCAGGACTTGTTTTCCTGGAAAAAGGGGTCGTCTACTCCTCTCCATGACCAAATTTATTCGTCTCCGAAACTCTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.9

Weight (kDa)

6.46

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58070
fragaria_vesca FvH4_6g51930
malus_domestica MD08G1240500.v1.1 MD15G1433700.v1.1
prunus_persica Prupe.1G577200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0173411
rosa_laevigata RLG00000022187
rosa_multiflora Rmu_co8519037.1_g000002 Rmu_ssc0000282.1_g000013
rosa_roxburghii Rroxscaffold_2G00078890
rosa_rugosa Rorug02G0568100
rosa_samantha Rh2AG648600 Rh2BG659200 Rh2CG624500 Rh2DG674400
rosa_wichuraiana Rw2G053240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AccBSI CCGCTC 3 cut(s) 78, 111, 561
AccI GTMKAC 1 cut(s) 653
AciI CCGC 6 cut(s) 76, 111, 368, 372, 389, 561
AclWI GGATC 2 cut(s) 182, 471
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 2 cut(s) 430, 672
AfaI GTAC 2 cut(s) 33, 178
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 3 cut(s) 20, 271, 322
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 635
AluBI AGCT 4 cut(s) 92, 247, 331, 352
AluI AGCT 4 cut(s) 92, 247, 331, 352
Alw26I GTCTC 2 cut(s) 230, 687
AlwI GGATC 2 cut(s) 182, 471
AoxI GGCC 2 cut(s) 306, 369
ApeKI GCWGC 3 cut(s) 374, 377, 386
ApoI RAATTY 2 cut(s) 430, 672
AsuHPI GGTGA 3 cut(s) 135, 162, 395
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 386, 389, 398
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 637
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 230, 687
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 2 cut(s) 180, 393
BfmI CTRYAG 1 cut(s) 620
BisI GCNGC 7 cut(s) 112, 369, 372, 375, 378, 387, 390
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 7 cut(s) 113, 370, 373, 376, 379, 388, 391
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 637
BmrFI CCNGG 1 cut(s) 637
BmsI GCATC 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 357, 363
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 4 cut(s) 212, 257, 263, 269
BsaJI CCNNGG 4 cut(s) 120, 146, 300, 309
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 4 cut(s) 120, 146, 300, 309
BseGI GGATG 1 cut(s) 489
BseMII CTCAG 4 cut(s) 234, 354, 371, 521
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 2 cut(s) 109, 648
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 386, 389, 398
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 2 cut(s) 308, 371
BsiEI CGRYCG 1 cut(s) 372
BsmAI GTCTC 2 cut(s) 230, 687
BsmBI CGTCTC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 2 cut(s) 308, 371
Bsp143I GATC 4 cut(s) 187, 400, 425, 463
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 6 cut(s) 76, 111, 368, 372, 389, 561
BspANI GGCC 2 cut(s) 308, 371
BspCNI CTCAG 4 cut(s) 235, 355, 370, 520
BspHI TCATGA 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 624
BspPI GGATC 2 cut(s) 182, 471
BsrBI CCGCTC 3 cut(s) 78, 111, 561
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 120, 146, 300, 309
BssMI GATC 4 cut(s) 187, 400, 425, 463
BssT1I CCWWGG 2 cut(s) 146, 309
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 443, 621
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 4 cut(s) 243, 357, 363, 507
BstF5I GGATG 1 cut(s) 489
BstKTI GATC 4 cut(s) 190, 403, 428, 466
BstMAI GTCTC 2 cut(s) 230, 687
BstMBI GATC 4 cut(s) 187, 400, 425, 463
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 5 cut(s) 368, 374, 377, 383, 386
BstNI CCWGG 1 cut(s) 637
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 635
BstSFI CTRYAG 1 cut(s) 620
BstV1I GCAGC 3 cut(s) 386, 389, 398
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 308, 371
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 37
CciNI GCGGCCGC 1 cut(s) 369
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 32, 177
CviAII CATG 5 cut(s) 38, 343, 407, 533, 665
CviQI GTAC 2 cut(s) 32, 177
DdeI CTNAG 4 cut(s) 243, 357, 363, 507
DpnI GATC 4 cut(s) 189, 402, 427, 465
DpnII GATC 4 cut(s) 187, 400, 425, 463
EaeI YGGCCR 1 cut(s) 369
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 443, 621
EarI CTCTTC 2 cut(s) 443, 621
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 146, 309
Eco52I CGGCCG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 2 cut(s) 146, 309
ErhI CCWWGG 2 cut(s) 146, 309
Esp3I CGTCTC 1 cut(s) 687
FaeI CATG 5 cut(s) 41, 346, 410, 536, 668
FaiI YATR 8 cut(s) 39, 195, 344, 408, 534, 555, 585, 666
FatI CATG 5 cut(s) 37, 342, 406, 532, 664
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 653
Fnu4HI GCNGC 7 cut(s) 112, 369, 372, 375, 378, 387, 390
FokI GGATG 1 cut(s) 496
Fsp4HI GCNGC 7 cut(s) 112, 369, 372, 375, 378, 387, 390
FspBI CTAG 2 cut(s) 180, 393
GluI GCNGC 7 cut(s) 112, 369, 372, 375, 378, 387, 390
HaeIII GGCC 2 cut(s) 308, 371
HgaI GACGC 1 cut(s) 87
Hin1II CATG 5 cut(s) 41, 346, 410, 536, 668
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 2 cut(s) 290, 538
HphI GGTGA 3 cut(s) 135, 162, 395
Hpy166II GTNNAC 3 cut(s) 58, 65, 654
Hpy188I TCNGA 5 cut(s) 124, 295, 436, 510, 687
Hpy188III TCNNGA 3 cut(s) 38, 66, 229
Hpy8I GTNNAC 3 cut(s) 58, 65, 654
HpyAV CCTTC 3 cut(s) 35, 82, 454
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 326, 622
HpyF10VI GCNNNNNNNGC 5 cut(s) 368, 374, 377, 383, 386
HpyF3I CTNAG 4 cut(s) 243, 357, 363, 507
Hsp92II CATG 5 cut(s) 41, 346, 410, 536, 668
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 187, 400, 425, 463
LmnI GCTCC 2 cut(s) 83, 558
LpnPI CCDG 6 cut(s) 42, 338, 344, 608, 622, 649
Lsp1109I GCAGC 3 cut(s) 386, 389, 398
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 180, 393
MalI GATC 4 cut(s) 189, 402, 427, 465
MbiI CCGCTC 3 cut(s) 78, 111, 561
MboI GATC 4 cut(s) 187, 400, 425, 463
MboII GAAGA 7 cut(s) 8, 132, 283, 460, 607, 608, 610
MluCI AATT 3 cut(s) 430, 580, 672
MlyI GAGTC 1 cut(s) 299
MseI TTAA 2 cut(s) 456, 515
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 637
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 1 cut(s) 637
MwoI GCNNNNNNNGC 5 cut(s) 368, 374, 377, 383, 386
NdeII GATC 4 cut(s) 187, 400, 425, 463
NlaIII CATG 5 cut(s) 41, 346, 410, 536, 668
NotI GCGGCCGC 1 cut(s) 369
NspI RCATGY 1 cut(s) 346
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 342
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 635
PkrI GCNGC 7 cut(s) 113, 370, 373, 376, 379, 388, 391
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 342
PsiI TTATAA 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 635
PspGI CCWGG 1 cut(s) 635
PstI CTGCAG 1 cut(s) 624
RsaI GTAC 2 cut(s) 33, 178
RsaNI GTAC 2 cut(s) 32, 177
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 456, 515
SatI GCNGC 7 cut(s) 112, 369, 372, 375, 378, 387, 390
Sau3AI GATC 4 cut(s) 187, 400, 425, 463
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 637
SetI ASST 9 cut(s) 37, 94, 249, 264, 306, 320, 333, 354, 547
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 227, 236, 248, 278
SmoI CTYRAG 4 cut(s) 227, 236, 248, 278
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 3 cut(s) 430, 580, 672
SsiI CCGC 6 cut(s) 76, 111, 368, 372, 389, 561
SspMI CTAG 2 cut(s) 180, 393
StyD4I CCNGG 1 cut(s) 635
StyI CCWWGG 2 cut(s) 146, 309
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 419, 473
TasI AATT 3 cut(s) 430, 580, 672
TatI WGTACW 1 cut(s) 176
TauI GCSGC 4 cut(s) 114, 371, 374, 392
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 456, 515
Tru9I TTAA 2 cut(s) 456, 515
TscAI CASTG 1 cut(s) 473
TseI GCWGC 3 cut(s) 374, 377, 386
TspDTI ATGAA 1 cut(s) 608
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 473
XapI RAATTY 2 cut(s) 430, 672
XceI RCATGY 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 653
XspI CTAG 2 cut(s) 180, 393
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.