AT1G59600

A-kinase anchor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010497
Physical Location & Seq
Reverse (-)
21889639 .. 21892056
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59600.1

Sequence Viewer

Length: 975 bp
ATGCGATCGTTAGAAGAGCTATCTCCGATAGAAACTCTAGATATCGAAGAGAACGGTCTCGCTCTCGTCTCACGCGTCAAGCTCAATCTCACAATCCACCCAGTAGTCCCATCCGTATCCAAATCCATCGACGAATGGCAACTCAAGCGATCCTTAATAGATTACCTCAAAAACTCTGTCGTAACCTCCGTCACAGTTCCGGAGGAAGACATCGTAGTTCGTCGTCACAAGGACTTGAAGAAACGGAAGCGTGAGGAGCCAGTTGCTCATGGATCGTTGTTTATACGCGATTTAGGGTTTCTCGATGGGAAGAAGAAGAAGAAGGAGAATGATGGAGAGAGAGATGTGAAGGAATTGGAGAAGAAGTTTTTGGATTGGAGGAAGAGTTTGGTGGAGAAGATGAATGGTATTGAGCTTAATTTGGAAGGAGTTAAGTATAAGCTTAGTGTGGTACTTCCGATTTCAGATGATTTCGAGAAGTTGAAGAAGGATTGGGAGGAGTTTTACGCTTTTGGACATTCAAGGGAAGGAAGGAGAGAGGCTGATACGATTATACTTAGAGGTGTGCCATCAAGATGGTTTGCTGAGCCACGAGTTTCATCGAAGCCTTCTATGTTGGTTACACATACAATCTTCTCTAGCTTTGGGAAAATTAGGAATCTTAATGTTGCTGAGGACGATGATCTAGGTAAGGACGCAGATGAGGATAGTGGAGACCTCATATCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGAGAAGTACAATGATTTCGTGAATGCCATGAAGGCTTTTTGTGGTCGCTCAATGGAAAAGGAAGGCACTCGGCTAAAGGCAGACTATGAACTAACATGGGACAAGATTGGATTCTTCAGAAACTCGAGAAAGCCGTTGGATAACAGAGATGGCGGATACAGAAACGAGTCTTTTGGATGCAATCAGGATGATTTACGCCGAAAAAGATTCAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

37.57

Weight (kDa)

8.23

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RBD_AKAP-17A PF25015 123 - 291 7.2e-33 AKAP-17A-like, RNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 75, 288
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 909
AclWI GGATC 2 cut(s) 144, 280
AcuI CTGAAG 1 cut(s) 856
AfaI GTAC 2 cut(s) 453, 764
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 3 cut(s) 238, 484, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 5 cut(s) 19, 82, 415, 442, 642
AluI AGCT 5 cut(s) 19, 82, 415, 442, 642
Alw26I GTCTC 4 cut(s) 62, 73, 708, 734
AlwI GGATC 2 cut(s) 144, 280
Ama87I CYCGRG 1 cut(s) 880
Aor13HI TCCGGA 1 cut(s) 199
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AvaI CYCGRG 1 cut(s) 880
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 672
BccI CCATC 7 cut(s) 118, 134, 299, 326, 570, 577, 899
BceAI ACGGC 1 cut(s) 874
BciVI GTATCC 2 cut(s) 127, 905
BcoDI GTCTC 4 cut(s) 62, 73, 708, 734
BfaI CTAG 3 cut(s) 38, 639, 686
BfuI GTATCC 2 cut(s) 127, 905
BglI GCCNNNNNGGC 1 cut(s) 788
BlpI GCTNAGC 1 cut(s) 585
BmeT110I CYCGRG 1 cut(s) 880
BmiI GGNNCC 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 923
BmuI ACTGGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 128
BsaI GGTCTC 3 cut(s) 62, 708, 734
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 4 cut(s) 350, 370, 380, 400
Bse1I ACTGG 2 cut(s) 101, 260
BseAI TCCGGA 1 cut(s) 199
BseGI GGATG 3 cut(s) 110, 938, 949
BseMII CTCAG 2 cut(s) 576, 663
BseNI ACTGG 2 cut(s) 101, 260
BseRI GAGGAG 2 cut(s) 269, 512
Bsh1236I CGCG 2 cut(s) 75, 288
Bsh1285I CGRYCG 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 880
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 2 cut(s) 92, 869
BsmAI GTCTC 4 cut(s) 62, 73, 708, 734
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 92, 869
BsmI GAATGC 1 cut(s) 784
Bso31I GGTCTC 3 cut(s) 62, 708, 734
BsoBI CYCGRG 1 cut(s) 880
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 4 cut(s) 5, 149, 272, 682
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 1 cut(s) 909
BspCNI CTCAG 2 cut(s) 577, 664
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 2 cut(s) 75, 288
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 144, 280
BspQI GCTCTTC 1 cut(s) 9
BspTNI GGTCTC 3 cut(s) 62, 708, 734
BsrI ACTGG 2 cut(s) 101, 260
BssMI GATC 4 cut(s) 5, 149, 272, 682
BssSI CACGAG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 56, 196
Bst6I CTCTTC 3 cut(s) 9, 42, 377
BstDEI CTNAG 4 cut(s) 443, 557, 585, 672
BstF5I GGATG 3 cut(s) 110, 938, 949
BstFNI CGCG 2 cut(s) 75, 288
BstKTI GATC 4 cut(s) 8, 152, 275, 685
BstMAI GTCTC 4 cut(s) 62, 73, 708, 734
BstMBI GATC 4 cut(s) 5, 149, 272, 682
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 3 cut(s) 145, 256, 788
BstUI CGCG 2 cut(s) 75, 288
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 576
BsuI GTATCC 2 cut(s) 127, 905
BtsCI GGATG 3 cut(s) 110, 938, 949
CseI GACGC 2 cut(s) 64, 704
Csp6I GTAC 2 cut(s) 452, 763
CviAII CATG 3 cut(s) 269, 784, 852
CviQI GTAC 2 cut(s) 452, 763
DdeI CTNAG 4 cut(s) 443, 557, 585, 672
DpnI GATC 4 cut(s) 7, 151, 274, 684
DpnII GATC 4 cut(s) 5, 149, 272, 682
Eam1104I CTCTTC 3 cut(s) 9, 42, 377
EarI CTCTTC 3 cut(s) 9, 42, 377
EciI GGCGGA 1 cut(s) 924
Eco31I GGTCTC 3 cut(s) 62, 708, 734
Eco32I GATATC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 880
EcoRV GATATC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 3 cut(s) 272, 787, 855
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 2 cut(s) 92, 869
FatI CATG 3 cut(s) 268, 783, 851
FokI GGATG 3 cut(s) 97, 945, 956
FspBI CTAG 3 cut(s) 38, 639, 686
HapII CCGG 1 cut(s) 200
HgaI GACGC 2 cut(s) 64, 704
Hin1II CATG 3 cut(s) 272, 787, 855
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 4 cut(s) 658, 867, 923, 963
HpaII CCGG 1 cut(s) 200
Hpy188I TCNGA 4 cut(s) 27, 459, 466, 875
Hpy188III TCNNGA 9 cut(s) 38, 200, 302, 475, 573, 757, 775, 882, 941
Hpy99I CGWCG 2 cut(s) 134, 225
HpyAV CCTTC 9 cut(s) 316, 343, 419, 481, 521, 525, 618, 781, 812
HpyCH4III ACNGT 2 cut(s) 56, 196
HpyCH4V TGCA 1 cut(s) 936
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 256, 788
HpyF3I CTNAG 4 cut(s) 443, 557, 585, 672
Hsp92II CATG 3 cut(s) 272, 787, 855
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 4 cut(s) 5, 149, 272, 682
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 114, 213, 273, 711, 926, 952
LweI GCATC 1 cut(s) 923
MaeI CTAG 3 cut(s) 38, 639, 686
MaeIII GTNAC 4 cut(s) 181, 190, 224, 619
MalI GATC 4 cut(s) 7, 151, 274, 684
MboI GATC 4 cut(s) 5, 149, 272, 682
MluCI AATT 3 cut(s) 353, 418, 651
MluI ACGCGT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 932
MmeI TCCRAC 1 cut(s) 873
MroI TCCGGA 1 cut(s) 199
MseI TTAA 4 cut(s) 155, 417, 432, 663
MslI CAYNNNNRTG 1 cut(s) 574
MspI CCGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 784
MvnI CGCG 2 cut(s) 75, 288
MwoI GCNNNNNNNGC 3 cut(s) 145, 256, 788
NdeII GATC 4 cut(s) 5, 149, 272, 682
NlaIII CATG 3 cut(s) 272, 787, 855
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 2 cut(s) 190, 224
PaeR7I CTCGAG 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 186, 887
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 3 cut(s) 658, 867, 963
Ple19I CGATCG 1 cut(s) 8
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
PspN4I GGNNCC 1 cut(s) 258
PvuI CGATCG 1 cut(s) 8
RsaI GTAC 2 cut(s) 453, 764
RsaNI GTAC 2 cut(s) 452, 763
RseI CAYNNNNRTG 1 cut(s) 574
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 4 cut(s) 155, 417, 432, 663
Sau3AI GATC 4 cut(s) 5, 149, 272, 682
SchI GAGTC 1 cut(s) 932
SfaNI GCATC 1 cut(s) 923
Sfr274I CTCGAG 1 cut(s) 880
SlaI CTCGAG 1 cut(s) 880
SmiMI CAYNNNNRTG 1 cut(s) 574
SmlI CTYRAG 2 cut(s) 143, 880
SmoI CTYRAG 2 cut(s) 143, 880
Sse9I AATT 3 cut(s) 353, 418, 651
SsiI CCGC 1 cut(s) 909
SspMI CTAG 3 cut(s) 38, 639, 686
TaaI ACNGT 2 cut(s) 56, 196
TaqI TCGA 7 cut(s) 45, 129, 303, 474, 602, 756, 881
TasI AATT 3 cut(s) 353, 418, 651
TatI WGTACW 1 cut(s) 762
TfiI GAWTC 3 cut(s) 658, 867, 963
Tru1I TTAA 4 cut(s) 155, 417, 432, 663
Tru9I TTAA 4 cut(s) 155, 417, 432, 663
TseFI GTSAC 2 cut(s) 190, 224
Tsp45I GTSAC 2 cut(s) 190, 224
TspDTI ATGAA 4 cut(s) 416, 588, 800, 858
TspGWI ACGGA 3 cut(s) 103, 178, 259
XbaI TCTAGA 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 880
XspI CTAG 3 cut(s) 38, 639, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.