Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466471.1

Orthogroup ID

OG0010497

Physical Location & Seq

Genomic Coordinates Reverse (-)

88 .. 1918

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466471.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ctgaagttggattcgatttctcctactgaaactgtggagatagagaatggtctgtcactggtgccgcggctccggctgaatataacggtgtatccgtcgagccaagttgtgagcaaaccgattgacgagtggaagatgaagcaaaccctaattgacttcctcaagagctcgctttccgatccggtcacagttccggaggaggatctcaagatcagacgggtgagggacctgaagaagcggaagcgggacgaccctgtagcttccggtaccatcttcattcgcgacctagggtttctgaggaagacgagcaggaagggtgaggaggatgaggagaagagcgttgaggaggtggagaagaagttaagtgattggaggaggtacattgtggagaagatggatgggattgagctcaatctcgaaggggttaagttcaagctaaacgtcgtcgttccggagtcggatgatttcaaggcgacgaagaaaggttgggaggagttttacgctttcggaaatcgagggttttcgaggagtgggaagcaagagactgatactataatactgaagggtgttccttcacgctggttcgcagagccgcgggtttcctcaaagccttcaatgctggtcacacataccatcttttcgacatttgggaagataaggaatcttaatgttgctgaggacgatgatccaggtaaggatgcgaatgaggatgatggggacttggtttcaggtctccattgtaagattgtggttcagttcgagaaacacaaggacttctacaatactttcaaggtgttttgtggccgctcattgcagaaggaaggatctaagttgaaggctgattatgaggttacttgggacaaggatggatttttccgaaactcgagaaatcaaacacaggaagatagtagcagggcacgagaaaccacaacatatcccaggcagcagcaacactattctcggttcagttccgatgaagctcccagaaagaggtttaaggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

38.67

Weight (kDa)

8.58

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59600
fragaria_vesca	FvH4_2g33060 FvH4_2g33060 FvH4_2g33060 FvH4_2g33060
malus_domestica	MD15G1069100.v1.1
prunus_persica	Prupe.1G422600_v2.0.a1 Prupe.1G422600_v2.0.a1 Prupe.1G422600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0309651
rosa_laevigata	RLG00000010547
rosa_multiflora	Rmu_co8466471.1_g000001 Rmu_sc0007632.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159250
rosa_rugosa	Rorug06G0373500 Rorug06G0373600
rosa_samantha	Rh6AG487100 Rh6BG496700 Rh6CG501400 Rh6DG487500
rosa_wichuraiana	Rw6G042430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	2 cut(s)	61, 266
AccBSI	CCGCTC	1 cut(s)	807
AccII	CGCG	3 cut(s)	67, 282, 595
AccIII	TCCGGA	2 cut(s)	193, 451
AciI	CCGC	7 cut(s)	65, 67, 238, 244, 593, 595, 805
AclWI	GGATC	4 cut(s)	173, 210, 680, 832
AcoI	YGGCCR	1 cut(s)	802
AcuI	CTGAAG	3 cut(s)	23, 251, 581
AfaI	GTAC	2 cut(s)	268, 380
AfiI	CCNNNNNNNGG	1 cut(s)	990
AgsI	TTSAA	5 cut(s)	433, 469, 615, 790, 835
AjnI	CCWGG	2 cut(s)	688, 938
AluBI	AGCT	5 cut(s)	168, 260, 409, 436, 980
AluI	AGCT	5 cut(s)	168, 260, 409, 436, 980
Alw21I	GWGCWC	2 cut(s)	170, 411
Alw26I	GTCTC	2 cut(s)	536, 737
AlwI	GGATC	4 cut(s)	173, 210, 680, 832
Ama87I	CYCGRG	1 cut(s)	883
Aor13HI	TCCGGA	2 cut(s)	193, 451
AoxI	GGCC	1 cut(s)	802
ApeKI	GCWGC	2 cut(s)	943, 946
Asp718I	GGTACC	1 cut(s)	266
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	232, 329
AvaI	CYCGRG	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	226
AvrII	CCTAGG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	919
BanI	GGYRCC	2 cut(s)	61, 266
BanII	GRGCYC	2 cut(s)	170, 411
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	170, 411
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	2 cut(s)	955, 958
BccI	CCATC	6 cut(s)	278, 388, 392, 641, 707, 860
BciT130I	CCWGG	2 cut(s)	690, 940
BciVI	GTATCC	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	536, 737
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	6 cut(s)	65, 68, 593, 805, 944, 947
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	6 cut(s)	66, 69, 594, 806, 945, 948
Bme1390I	CCNGG	2 cut(s)	690, 940
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	4 cut(s)	63, 71, 227, 268
BmrFI	CCNGG	2 cut(s)	690, 940
BmsI	GCATC	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	2 cut(s)	146, 191
BsaI	GGTCTC	1 cut(s)	737
BsaJI	CCNNGG	4 cut(s)	65, 286, 593, 938
BsaWI	WCCGGW	4 cut(s)	181, 193, 263, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	990
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	809
BseAI	TCCGGA	2 cut(s)	193, 451
BseBI	CCWGG	2 cut(s)	690, 940
BseDI	CCNNGG	4 cut(s)	65, 286, 593, 938
BseGI	GGATG	6 cut(s)	331, 403, 466, 703, 715, 871
BseLI	CCNNNNNNNGG	1 cut(s)	990
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	2 cut(s)	287, 666
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	7 cut(s)	212, 335, 344, 359, 388, 506, 541
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	2 cut(s)	955, 958
Bsh1236I	CGCG	3 cut(s)	67, 282, 595
BshFI	GGCC	1 cut(s)	804
BshNI	GGYRCC	2 cut(s)	61, 266
BsiHKAI	GWGCWC	2 cut(s)	170, 411
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	5 cut(s)	73, 182, 194, 264, 452
BslFI	GGGAC	4 cut(s)	239, 260, 731, 872
BslI	CCNNNNNNNGG	1 cut(s)	990
BsmAI	GTCTC	2 cut(s)	536, 737
BsmFI	GGGAC	4 cut(s)	239, 260, 731, 872
BsnI	GGCC	1 cut(s)	804
Bso31I	GGTCTC	1 cut(s)	737
BsoBI	CYCGRG	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	170, 411, 919
Bsp13I	TCCGGA	2 cut(s)	193, 451
Bsp143I	GATC	5 cut(s)	178, 202, 210, 685, 824
Bsp68I	TCGCGA	1 cut(s)	282
BspACI	CCGC	7 cut(s)	65, 67, 238, 244, 593, 595, 805
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	2 cut(s)	288, 667
BspEI	TCCGGA	2 cut(s)	193, 451
BspFNI	CGCG	3 cut(s)	67, 282, 595
BspLI	GGNNCC	4 cut(s)	63, 71, 227, 268
BspPI	GGATC	4 cut(s)	173, 210, 680, 832
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	2 cut(s)	61, 266
BspTNI	GGTCTC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	807
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	4 cut(s)	65, 286, 593, 938
BssMI	GATC	5 cut(s)	178, 202, 210, 685, 824
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	2 cut(s)	690, 940
Bst4CI	ACNGT	3 cut(s)	34, 88, 190
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	296, 675, 828
BstDSI	CCRYGG	2 cut(s)	65, 593
BstF5I	GGATG	6 cut(s)	331, 403, 466, 703, 715, 871
BstFNI	CGCG	3 cut(s)	67, 282, 595
BstKTI	GATC	5 cut(s)	181, 205, 213, 688, 827
BstMAI	GTCTC	2 cut(s)	536, 737
BstMBI	GATC	5 cut(s)	178, 202, 210, 685, 824
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 616
BstNI	CCWGG	2 cut(s)	690, 940
BstSCI	CCNGG	2 cut(s)	688, 938
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	919
BstUI	CGCG	3 cut(s)	67, 282, 595
BstV1I	GCAGC	2 cut(s)	955, 958
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	202, 824
BstYI	RGATCY	2 cut(s)	202, 824
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	804
BtgI	CCRYGG	2 cut(s)	65, 593
BtsCI	GGATG	6 cut(s)	331, 403, 466, 703, 715, 871
BtsIMutI	CAGTG	1 cut(s)	56
BtuMI	TCGCGA	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	226
Cfr42I	CCGCGG	2 cut(s)	68, 596
Csp6I	GTAC	2 cut(s)	267, 379
CviQI	GTAC	2 cut(s)	267, 379
DdeI	CTNAG	3 cut(s)	296, 675, 828
DpnI	GATC	5 cut(s)	180, 204, 212, 687, 826
DpnII	GATC	5 cut(s)	178, 202, 210, 685, 824
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	2 cut(s)	168, 409
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	170, 411
Eco31I	GGTCTC	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	2 cut(s)	168, 409
Eco57I	CTGAAG	3 cut(s)	23, 251, 581
Eco88I	CYCGRG	1 cut(s)	883
EcoICRI	GAGCTC	2 cut(s)	168, 409
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	688, 938
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	2 cut(s)	170, 411
ErhI	CCWWGG	1 cut(s)	286
FaiI	YATR	5 cut(s)	83, 554, 630, 846, 934
FaqI	GGGAC	4 cut(s)	239, 260, 731, 872
FauI	CCCGC	2 cut(s)	237, 588
Fnu4HI	GCNGC	6 cut(s)	65, 68, 593, 805, 944, 947
FokI	GGATG	6 cut(s)	338, 410, 473, 710, 722, 878
FriOI	GRGCYC	2 cut(s)	170, 411
Fsp4HI	GCNGC	6 cut(s)	65, 68, 593, 805, 944, 947
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	6 cut(s)	65, 68, 593, 805, 944, 947
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	5 cut(s)	73, 182, 194, 264, 452
HinfI	GANTC	3 cut(s)	11, 455, 661
HpaII	CCGG	5 cut(s)	73, 182, 194, 264, 452
HphI	GGTGA	2 cut(s)	232, 329
Hpy188I	TCNGA	7 cut(s)	178, 215, 297, 460, 509, 878, 973
Hpy188III	TCNNGA	8 cut(s)	163, 194, 208, 281, 416, 452, 760, 885
Hpy99I	CGWCG	4 cut(s)	100, 446, 449, 478
HpyAV	CCTTC	8 cut(s)	307, 413, 556, 582, 621, 811, 815, 829
HpyCH4III	ACNGT	3 cut(s)	34, 88, 190
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	1 cut(s)	814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 616
HpyF3I	CTNAG	3 cut(s)	296, 675, 828
HpySE526I	ACGT	1 cut(s)	441
Kpn2I	TCCGGA	2 cut(s)	193, 451
KpnI	GGTACC	1 cut(s)	270
KspI	CCGCGG	2 cut(s)	68, 596
Kzo9I	GATC	5 cut(s)	178, 202, 210, 685, 824
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	75, 985
Lsp1109I	GCAGC	2 cut(s)	955, 958
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	4 cut(s)	54, 184, 622, 850
MalI	GATC	5 cut(s)	180, 204, 212, 687, 826
MbiI	CCGCTC	1 cut(s)	807
MboI	GATC	5 cut(s)	178, 202, 210, 685, 824
MflI	RGATCY	2 cut(s)	202, 824
MhlI	GDGCHC	3 cut(s)	170, 411, 919
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	438
MroI	TCCGGA	2 cut(s)	193, 451
MseI	TTAA	4 cut(s)	362, 426, 666, 996
MspA1I	CMGCKG	2 cut(s)	67, 595
MspI	CCGG	5 cut(s)	73, 182, 194, 264, 452
MspR9I	CCNGG	2 cut(s)	690, 940
MvaI	CCWGG	2 cut(s)	690, 940
MvnI	CGCG	3 cut(s)	67, 282, 595
MwoI	GCNNNNNNNGC	2 cut(s)	73, 616
NdeII	GATC	5 cut(s)	178, 202, 210, 685, 824
NlaIV	GGNNCC	4 cut(s)	63, 71, 227, 268
NmuCI	GTSAC	3 cut(s)	54, 184, 622
NruI	TCGCGA	1 cut(s)	282
PaeR7I	CTCGAG	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	11, 661
PkrI	GCNGC	6 cut(s)	66, 69, 594, 806, 945, 948
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	226
Psp124BI	GAGCTC	2 cut(s)	170, 411
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	688, 938
PspGI	CCWGG	2 cut(s)	688, 938
PspN4I	GGNNCC	4 cut(s)	63, 71, 227, 268
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	202, 824
RruI	TCGCGA	1 cut(s)	282
RsaI	GTAC	2 cut(s)	268, 380
RsaNI	GTAC	2 cut(s)	267, 379
SacI	GAGCTC	2 cut(s)	170, 411
SacII	CCGCGG	2 cut(s)	68, 596
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	362, 426, 666, 996
SatI	GCNGC	6 cut(s)	65, 68, 593, 805, 944, 947
Sau3AI	GATC	5 cut(s)	178, 202, 210, 685, 824
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	690, 940
SduI	GDGCHC	3 cut(s)	170, 411, 919
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	883
Sfr303I	CCGCGG	2 cut(s)	68, 596
SgrBI	CCGCGG	2 cut(s)	68, 596
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	883
SmlI	CTYRAG	3 cut(s)	161, 206, 883
SmoI	CTYRAG	3 cut(s)	161, 206, 883
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	7 cut(s)	65, 67, 238, 244, 593, 595, 805
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	2 cut(s)	170, 411
StyD4I	CCNGG	2 cut(s)	688, 938
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	34, 88, 190
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	8 cut(s)	14, 98, 417, 514, 524, 641, 759, 884
TasI	AATT	1 cut(s)	150
TauI	GCSGC	4 cut(s)	67, 70, 595, 807
TfiI	GAWTC	2 cut(s)	11, 661
Tru1I	TTAA	4 cut(s)	362, 426, 666, 996
Tru9I	TTAA	4 cut(s)	362, 426, 666, 996
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	3 cut(s)	54, 184, 622
TseI	GCWGC	2 cut(s)	943, 946
Tsp45I	GTSAC	3 cut(s)	54, 184, 622
TspDTI	ATGAA	3 cut(s)	152, 265, 990
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	883
XmaJI	CCTAGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.