Rh6BG496700

A-kinase anchor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010497
Physical Location & Seq
Forward (+)
69767287 .. 69769492
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG496700.1

Sequence Viewer

Length: 732 bp
ATGAGCACGCTGAAGTTGGATTCGATTTCTCCTACTGAAACCGTGGAGATAGAGAATGGTCTGTCACTGGTGCCGCGGCTCCGGCTGAATATAACGGTGTATCCGTCGAGCCAAGTTGTGAGCAAACCGATTGACGAGTGGAAGATGAAGCAAACCCTAATTGACTTCCTCAAGAACTCGCTTTCCGATCCGGTCACAGTTCCGGAGGAGGACCTCAAGATCAGACGGGTGAGGGACCTGAAGAAGCGGAAGCGGGACGACCCTGTAGCTTCCGGTACCATCTTCATTCGCGACCTAGGGTTTCTGAGGAAGACGAGTAGGAAGGGTGAGGAGGATGAGGAGGTGGAGAAGAAGTTCAGTGATTGGAGGAGGTACATTGTGGAGAAGATGGATGGGATTGAGCTCAATCTCGAAGGGGTTAAGTTCAAGCTAAACGTCGCCGTTCCGGAGTCGGATGATTTCAAGGCAATGAAGAAAGGTTGGGAGGAGTTTTACGCTTTCGGAAATCGAGGGTTTTCGAGGGGTGGGAAGCAAGAGACTGATACTATAATACTGAGGGGTGTTCCTTCACGCTGGTTCGCAGAGCCACGGGTTTCGTCTAAGCCTTCAATGCTGGTTACACATACCATCTTTTCGACATTTGGGAAGATAAGGCATGTCAATGTGTTTGTTTTCTTGCTCTATCTGTTATCATATTGTAGAAAGCTACAGAGAAAATATTATGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

28.33

Weight (kDa)

9.55

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RBD_AKAP-17A PF25015 116 - 222 2.3e-21 AKAP-17A-like, RNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 70, 275
AccII CGCG 2 cut(s) 76, 291
AccIII TCCGGA 2 cut(s) 202, 445
AciI CCGC 4 cut(s) 74, 76, 247, 253
AclWI GGATC 1 cut(s) 182
AcuI CTGAAG 2 cut(s) 32, 260
AfaI GTAC 2 cut(s) 277, 374
AgsI TTSAA 3 cut(s) 427, 463, 609
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 338, 370
AluBI AGCT 4 cut(s) 269, 403, 430, 706
AluI AGCT 4 cut(s) 269, 403, 430, 706
Alw21I GWGCWC 2 cut(s) 8, 405
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 182
Aor13HI TCCGGA 2 cut(s) 202, 445
Asp700I GAANNNNTTC 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 275
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 211, 235
AsuHPI GGTGA 2 cut(s) 241, 338
AvaII GGWCC 2 cut(s) 211, 235
AvrII CCTAGG 1 cut(s) 295
BanI GGYRCC 2 cut(s) 70, 275
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 8, 405
BccI CCATC 4 cut(s) 287, 382, 386, 635
BceAI ACGGC 1 cut(s) 425
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 2 cut(s) 264, 707
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 2 cut(s) 74, 77
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 2 cut(s) 75, 78
Bme18I GGWCC 2 cut(s) 211, 235
BmgT120I GGNCC 2 cut(s) 211, 235
BmiI GGNNCC 4 cut(s) 72, 80, 236, 277
BpiI GAAGAC 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 155, 200
BsaJI CCNNGG 4 cut(s) 42, 74, 295, 587
BsaWI WCCGGW 4 cut(s) 190, 202, 272, 445
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 474
BseAI TCCGGA 2 cut(s) 202, 445
BseDI CCNNGG 4 cut(s) 42, 74, 295, 587
BseGI GGATG 3 cut(s) 340, 397, 460
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 296, 545
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 5 cut(s) 221, 344, 353, 382, 500
Bsh1236I CGCG 2 cut(s) 76, 291
BshNI GGYRCC 2 cut(s) 70, 275
BsiHKAI GWGCWC 2 cut(s) 8, 405
BsiSI CCGG 5 cut(s) 82, 191, 203, 273, 446
BslFI GGGAC 2 cut(s) 248, 269
BsmAI GTCTC 1 cut(s) 530
BsmFI GGGAC 2 cut(s) 248, 269
Bsp1286I GDGCHC 2 cut(s) 8, 405
Bsp13I TCCGGA 2 cut(s) 202, 445
Bsp143I GATC 2 cut(s) 187, 219
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 4 cut(s) 74, 76, 247, 253
BspCNI CTCAG 2 cut(s) 297, 546
BspEI TCCGGA 2 cut(s) 202, 445
BspFNI CGCG 2 cut(s) 76, 291
BspLI GGNNCC 4 cut(s) 72, 80, 236, 277
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 2 cut(s) 70, 275
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 4 cut(s) 42, 74, 295, 587
BssMI GATC 2 cut(s) 187, 219
BssT1I CCWWGG 1 cut(s) 295
Bst4CI ACNGT 3 cut(s) 43, 97, 199
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 305, 554, 600
BstDSI CCRYGG 3 cut(s) 42, 74, 587
BstF5I GGATG 3 cut(s) 340, 397, 460
BstFNI CGCG 2 cut(s) 76, 291
BstKTI GATC 2 cut(s) 190, 222
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 2 cut(s) 187, 219
BstMWI GCNNNNNNNGC 2 cut(s) 82, 610
BstNSI RCATGY 1 cut(s) 659
BstSFI CTRYAG 2 cut(s) 264, 707
BstUI CGCG 2 cut(s) 76, 291
BstV2I GAAGAC 1 cut(s) 317
BsuI GTATCC 1 cut(s) 111
BtgI CCRYGG 3 cut(s) 42, 74, 587
BtsCI GGATG 3 cut(s) 340, 397, 460
BtsIMutI CAGTG 2 cut(s) 65, 364
BtuMI TCGCGA 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 211, 235
Cfr42I CCGCGG 1 cut(s) 77
Csp6I GTAC 2 cut(s) 276, 373
CviAII CATG 1 cut(s) 656
CviJI RGCY 9 cut(s) 79, 85, 111, 269, 403, 430, 586, 604, 706
CviKI_1 RGCY 9 cut(s) 79, 85, 111, 269, 403, 430, 586, 604, 706
CviQI GTAC 2 cut(s) 276, 373
DdeI CTNAG 3 cut(s) 305, 554, 600
DpnI GATC 2 cut(s) 189, 221
DpnII GATC 2 cut(s) 187, 219
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 211, 235
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 32, 260
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 2 cut(s) 211, 235
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 659
FaiI YATR 6 cut(s) 92, 548, 624, 657, 694, 723
FaqI GGGAC 2 cut(s) 248, 269
FatI CATG 1 cut(s) 655
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 74, 77
FokI GGATG 3 cut(s) 347, 404, 467
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 74, 77
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 74, 77
HapII CCGG 5 cut(s) 82, 191, 203, 273, 446
Hin1II CATG 1 cut(s) 659
HinfI GANTC 2 cut(s) 20, 449
HpaII CCGG 5 cut(s) 82, 191, 203, 273, 446
HphI GGTGA 2 cut(s) 241, 338
Hpy188I TCNGA 5 cut(s) 187, 224, 306, 454, 503
Hpy188III TCNNGA 6 cut(s) 172, 203, 217, 290, 410, 446
Hpy99I CGWCG 2 cut(s) 109, 440
HpyAV CCTTC 4 cut(s) 316, 407, 576, 615
HpyCH4III ACNGT 3 cut(s) 43, 97, 199
HpyCH4IV ACGT 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 610
HpyF3I CTNAG 3 cut(s) 305, 554, 600
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 659
Kpn2I TCCGGA 2 cut(s) 202, 445
KpnI GGTACC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 77
Kzo9I GATC 2 cut(s) 187, 219
LmnI GCTCC 1 cut(s) 84
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 63, 193, 616
MalI GATC 2 cut(s) 189, 221
MboI GATC 2 cut(s) 187, 219
MboII GAAGA 8 cut(s) 154, 253, 274, 322, 361, 397, 484, 658
MhlI GDGCHC 2 cut(s) 8, 405
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 432
MroI TCCGGA 2 cut(s) 202, 445
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 5 cut(s) 82, 191, 203, 273, 446
MvnI CGCG 2 cut(s) 76, 291
MwoI GCNNNNNNNGC 2 cut(s) 82, 610
NdeII GATC 2 cut(s) 187, 219
NlaIII CATG 1 cut(s) 659
NlaIV GGNNCC 4 cut(s) 72, 80, 236, 277
NmuCI GTSAC 2 cut(s) 63, 193
NruI TCGCGA 1 cut(s) 291
NspI RCATGY 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 75, 78
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PpuMI RGGWCCY 2 cut(s) 211, 235
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 2 cut(s) 211, 235
PspN4I GGNNCC 4 cut(s) 72, 80, 236, 277
PspPI GGNCC 2 cut(s) 211, 235
PspPPI RGGWCCY 2 cut(s) 211, 235
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 277, 374
RsaNI GTAC 2 cut(s) 276, 373
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 405
SacII CCGCGG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 74, 77
Sau3AI GATC 2 cut(s) 187, 219
Sau96I GGNCC 2 cut(s) 211, 235
SchI GAGTC 1 cut(s) 458
SduI GDGCHC 2 cut(s) 8, 405
SfcI CTRYAG 2 cut(s) 264, 707
Sfr303I CCGCGG 1 cut(s) 77
SgrBI CCGCGG 1 cut(s) 77
SinI GGWCC 2 cut(s) 211, 235
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 170, 215
SmoI CTYRAG 2 cut(s) 170, 215
Sse9I AATT 1 cut(s) 159
SsiI CCGC 4 cut(s) 74, 76, 247, 253
SspI AATATT 1 cut(s) 719
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 405
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 43, 97, 199
TaiI ACGT 1 cut(s) 438
TaqI TCGA 6 cut(s) 23, 107, 411, 508, 518, 635
TasI AATT 1 cut(s) 159
TauI GCSGC 2 cut(s) 76, 79
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 72, 364
TseFI GTSAC 2 cut(s) 63, 193
Tsp45I GTSAC 2 cut(s) 63, 193
TspDTI ATGAA 3 cut(s) 161, 274, 485
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 72, 364
VpaK11BI GGWCC 2 cut(s) 211, 235
XceI RCATGY 1 cut(s) 659
XmaJI CCTAGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.