Rh6CG501400

A-kinase anchor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010497
Physical Location & Seq
Forward (+)
66466569 .. 66468405
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG501400.1

Sequence Viewer

Length: 999 bp
ATGAGCACGCTGAAGTTGGATTCGATTTCTCCTACTGAAACCGTGGAGATAGAGAATGGTCTGTCACTGGTGCCGCGGCTCCGGCTGAATATAACGGTGTATCCGTCGAGCCAAGTTGTGAGCAAACCGATTGACGAGTGGAAGATGAAGCAAACCCTAATTGACTTCCTCAAGAACTCGCTTTCCGATCCGGTCACAGTTCCGGAGGAGGATCTCAAGATCAGACGGGTGAGGGACCTGAAGAAGCGGAAGCGGGACGACCCTGTAGCTTCCGGTACCATCTTCATTCGCGACCTAGGGTTTCTGAGGAAGACGAGTAGGAAAGGTGAGGAGGATGAGGAGGTGGAGAAGAAGTTCAGTGATTGGAGGAGGTACATTGTGGAGAAGATGGATGGGATTGAGCTCAATCTCGAAGGGGTTAAGTTCAAGCTAAACGTCGCCGTTCCGGAGTCGGATGATTTCCAGGGGATGAAGAAAGGTTGGGAGGAGTTTTACGCTTTCGGAAATCGAGGGTTTTCGAGGGGTGGGAAGCAAGAGACTGATACTATAATACTGAGGGGTGTTCCTTCACGCTGGTTCGCAGAGCCACGGGTTTCGTCTAAGCCTTCAATGCTGGTTACACATACCATCTTTTCGACATTTGGGAAGATAAGGAATCTTAATGTTGCTGAGGACGATGATCCAGGTAAGGATGCGAATGAGGATGATGGGGACTTGGTTTCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGAGAAACACAAGGACTTCTGCAATACTTTCAAGGCGTTTTGTGGCCGCTCATTGCAAAAGGAAGGATCTAAGTTGAAGGCTGATTATGAGGTTGCTTGGGACAAGGATGGATTTTTTCGAAACTCGAGAAATCAAACACAGGAAGACAGTAGCAGGGCACGAGAAACCACAACATATCCCAGGCAGCAGCAACACTATTCTCGGTTCAGTTCCGATGAAGCTCCCAGAAAGAGGTTTAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.34

Weight (kDa)

8.54

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RBD_AKAP-17A PF25015 116 - 300 2.3e-32 AKAP-17A-like, RNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 70, 275
AccBSI CCGCTC 1 cut(s) 801
AccII CGCG 2 cut(s) 76, 291
AccIII TCCGGA 2 cut(s) 202, 445
AciI CCGC 5 cut(s) 74, 76, 247, 253, 799
AclWI GGATC 4 cut(s) 182, 219, 674, 826
AcoI YGGCCR 1 cut(s) 796
AcuI CTGAAG 2 cut(s) 32, 260
AfaI GTAC 2 cut(s) 277, 374
AfiI CCNNNNNNNGG 1 cut(s) 984
AgsI TTSAA 4 cut(s) 427, 609, 784, 829
AjnI CCWGG 3 cut(s) 462, 682, 932
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 338, 370
AluBI AGCT 4 cut(s) 269, 403, 430, 974
AluI AGCT 4 cut(s) 269, 403, 430, 974
Alw21I GWGCWC 2 cut(s) 8, 405
Alw26I GTCTC 2 cut(s) 530, 731
AlwI GGATC 4 cut(s) 182, 219, 674, 826
Ama87I CYCGRG 1 cut(s) 877
Aor13HI TCCGGA 2 cut(s) 202, 445
AoxI GGCC 1 cut(s) 796
ApeKI GCWGC 2 cut(s) 937, 940
Asp700I GAANNNNTTC 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 275
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 241, 338
AsuII TTCGAA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 877
AvaII GGWCC 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 913
BanI GGYRCC 2 cut(s) 70, 275
BanII GRGCYC 1 cut(s) 405
BauI CACGAG 1 cut(s) 912
BbsI GAAGAC 2 cut(s) 317, 903
Bbv12I GWGCWC 2 cut(s) 8, 405
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 949, 952
BccI CCATC 6 cut(s) 287, 382, 386, 635, 701, 854
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 3 cut(s) 464, 684, 934
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 530, 731
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 5 cut(s) 74, 77, 799, 938, 941
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 5 cut(s) 75, 78, 800, 939, 942
Bme1390I CCNGG 3 cut(s) 464, 684, 934
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 4 cut(s) 72, 80, 236, 277
BmrFI CCNGG 3 cut(s) 464, 684, 934
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 317, 903
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 871
BpuEI CTTGAG 2 cut(s) 155, 200
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 6 cut(s) 42, 74, 295, 463, 587, 932
BsaWI WCCGGW 4 cut(s) 190, 202, 272, 445
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 984
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 803
BseAI TCCGGA 2 cut(s) 202, 445
BseBI CCWGG 3 cut(s) 464, 684, 934
BseDI CCNNGG 6 cut(s) 42, 74, 295, 463, 587, 932
BseGI GGATG 7 cut(s) 340, 397, 460, 474, 697, 709, 865
BseLI CCNNNNNNNGG 1 cut(s) 984
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 3 cut(s) 296, 545, 660
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 5 cut(s) 221, 344, 353, 382, 500
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 2 cut(s) 949, 952
Bsh1236I CGCG 2 cut(s) 76, 291
BshFI GGCC 1 cut(s) 798
BshNI GGYRCC 2 cut(s) 70, 275
BsiHKAI GWGCWC 2 cut(s) 8, 405
BsiHKCI CYCGRG 1 cut(s) 877
BsiSI CCGG 5 cut(s) 82, 191, 203, 273, 446
BslFI GGGAC 4 cut(s) 248, 269, 725, 866
BslI CCNNNNNNNGG 1 cut(s) 984
BsmAI GTCTC 2 cut(s) 530, 731
BsmFI GGGAC 4 cut(s) 248, 269, 725, 866
BsnI GGCC 1 cut(s) 798
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 877
Bsp119I TTCGAA 1 cut(s) 871
Bsp1286I GDGCHC 3 cut(s) 8, 405, 913
Bsp13I TCCGGA 2 cut(s) 202, 445
Bsp143I GATC 5 cut(s) 187, 211, 219, 679, 818
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 5 cut(s) 74, 76, 247, 253, 799
BspANI GGCC 1 cut(s) 798
BspCNI CTCAG 3 cut(s) 297, 546, 661
BspEI TCCGGA 2 cut(s) 202, 445
BspFNI CGCG 2 cut(s) 76, 291
BspLI GGNNCC 4 cut(s) 72, 80, 236, 277
BspPI GGATC 4 cut(s) 182, 219, 674, 826
BspT104I TTCGAA 1 cut(s) 871
BspT107I GGYRCC 2 cut(s) 70, 275
BspTNI GGTCTC 1 cut(s) 731
BsrBI CCGCTC 1 cut(s) 801
BsrDI GCAATG 1 cut(s) 803
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 6 cut(s) 42, 74, 295, 463, 587, 932
BssMI GATC 5 cut(s) 187, 211, 219, 679, 818
BssSI CACGAG 1 cut(s) 912
BssT1I CCWWGG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 912
Bst2UI CCWGG 3 cut(s) 464, 684, 934
Bst4CI ACNGT 4 cut(s) 43, 97, 199, 902
BstBI TTCGAA 1 cut(s) 871
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 5 cut(s) 305, 554, 600, 669, 822
BstDSI CCRYGG 3 cut(s) 42, 74, 587
BstF5I GGATG 7 cut(s) 340, 397, 460, 474, 697, 709, 865
BstFNI CGCG 2 cut(s) 76, 291
BstKTI GATC 5 cut(s) 190, 214, 222, 682, 821
BstMAI GTCTC 2 cut(s) 530, 731
BstMBI GATC 5 cut(s) 187, 211, 219, 679, 818
BstMWI GCNNNNNNNGC 2 cut(s) 82, 610
BstNI CCWGG 3 cut(s) 464, 684, 934
BstSCI CCNGG 3 cut(s) 462, 682, 932
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 913
BstUI CGCG 2 cut(s) 76, 291
BstV1I GCAGC 2 cut(s) 949, 952
BstV2I GAAGAC 2 cut(s) 317, 903
BstX2I RGATCY 2 cut(s) 211, 818
BstYI RGATCY 2 cut(s) 211, 818
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 798
BtgI CCRYGG 3 cut(s) 42, 74, 587
BtsCI GGATG 7 cut(s) 340, 397, 460, 474, 697, 709, 865
BtsIMutI CAGTG 2 cut(s) 65, 364
BtuMI TCGCGA 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 235
Cfr42I CCGCGG 1 cut(s) 77
Csp6I GTAC 2 cut(s) 276, 373
CviQI GTAC 2 cut(s) 276, 373
DdeI CTNAG 5 cut(s) 305, 554, 600, 669, 822
DpnI GATC 5 cut(s) 189, 213, 221, 681, 820
DpnII GATC 5 cut(s) 187, 211, 219, 679, 818
EaeI YGGCCR 1 cut(s) 796
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 731
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 32, 260
Eco88I CYCGRG 1 cut(s) 877
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 3 cut(s) 462, 682, 932
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 295
FaiI YATR 5 cut(s) 92, 548, 624, 840, 928
FaqI GGGAC 4 cut(s) 248, 269, 725, 866
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 74, 77, 799, 938, 941
FokI GGATG 7 cut(s) 347, 404, 467, 481, 704, 716, 872
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 5 cut(s) 74, 77, 799, 938, 941
FspBI CTAG 1 cut(s) 296
GluI GCNGC 5 cut(s) 74, 77, 799, 938, 941
HaeIII GGCC 1 cut(s) 798
HapII CCGG 5 cut(s) 82, 191, 203, 273, 446
HinfI GANTC 3 cut(s) 20, 449, 655
HpaII CCGG 5 cut(s) 82, 191, 203, 273, 446
HphI GGTGA 2 cut(s) 241, 338
Hpy188I TCNGA 6 cut(s) 187, 224, 306, 454, 503, 967
Hpy188III TCNNGA 8 cut(s) 172, 203, 217, 290, 410, 446, 754, 879
Hpy99I CGWCG 2 cut(s) 109, 440
HpyAV CCTTC 5 cut(s) 407, 576, 615, 809, 823
HpyCH4III ACNGT 4 cut(s) 43, 97, 199, 902
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 774, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 610
HpyF3I CTNAG 5 cut(s) 305, 554, 600, 669, 822
HpySE526I ACGT 1 cut(s) 435
Kpn2I TCCGGA 2 cut(s) 202, 445
KpnI GGTACC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 77
Kzo9I GATC 5 cut(s) 187, 211, 219, 679, 818
LmnI GCTCC 2 cut(s) 84, 979
Lsp1109I GCAGC 2 cut(s) 949, 952
LweI GCATC 1 cut(s) 682
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 3 cut(s) 63, 193, 616
MalI GATC 5 cut(s) 189, 213, 221, 681, 820
MbiI CCGCTC 1 cut(s) 801
MboI GATC 5 cut(s) 187, 211, 219, 679, 818
MboII GAAGA 9 cut(s) 154, 253, 274, 322, 361, 397, 484, 658, 908
MflI RGATCY 2 cut(s) 211, 818
MhlI GDGCHC 3 cut(s) 8, 405, 913
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 432
MroI TCCGGA 2 cut(s) 202, 445
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 420, 660, 990
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 5 cut(s) 82, 191, 203, 273, 446
MspR9I CCNGG 3 cut(s) 464, 684, 934
MvaI CCWGG 3 cut(s) 464, 684, 934
MvnI CGCG 2 cut(s) 76, 291
MwoI GCNNNNNNNGC 2 cut(s) 82, 610
NdeII GATC 5 cut(s) 187, 211, 219, 679, 818
NlaIV GGNNCC 4 cut(s) 72, 80, 236, 277
NmuCI GTSAC 2 cut(s) 63, 193
NruI TCGCGA 1 cut(s) 291
NspV TTCGAA 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 877
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 20, 655
PkrI GCNGC 5 cut(s) 75, 78, 800, 939, 942
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 3 cut(s) 462, 682, 932
PspGI CCWGG 3 cut(s) 462, 682, 932
PspN4I GGNNCC 4 cut(s) 72, 80, 236, 277
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 2 cut(s) 211, 818
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 277, 374
RsaNI GTAC 2 cut(s) 276, 373
SacI GAGCTC 1 cut(s) 405
SacII CCGCGG 1 cut(s) 77
SaqAI TTAA 3 cut(s) 420, 660, 990
SatI GCNGC 5 cut(s) 74, 77, 799, 938, 941
Sau3AI GATC 5 cut(s) 187, 211, 219, 679, 818
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 3 cut(s) 464, 684, 934
SduI GDGCHC 3 cut(s) 8, 405, 913
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 877
Sfr303I CCGCGG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 871
SgrBI CCGCGG 1 cut(s) 77
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 877
SmlI CTYRAG 3 cut(s) 170, 215, 877
SmoI CTYRAG 3 cut(s) 170, 215, 877
Sse9I AATT 1 cut(s) 159
SsiI CCGC 5 cut(s) 74, 76, 247, 253, 799
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 462, 682, 932
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 4 cut(s) 43, 97, 199, 902
TaiI ACGT 1 cut(s) 438
TaqI TCGA 9 cut(s) 23, 107, 411, 508, 518, 635, 753, 871, 878
TasI AATT 1 cut(s) 159
TauI GCSGC 3 cut(s) 76, 79, 801
TfiI GAWTC 2 cut(s) 20, 655
Tru1I TTAA 3 cut(s) 420, 660, 990
Tru9I TTAA 3 cut(s) 420, 660, 990
TscAI CASTG 2 cut(s) 72, 364
TseFI GTSAC 2 cut(s) 63, 193
TseI GCWGC 2 cut(s) 937, 940
Tsp45I GTSAC 2 cut(s) 63, 193
TspDTI ATGAA 4 cut(s) 161, 274, 485, 984
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 72, 364
VpaK11BI GGWCC 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 877
XmaJI CCTAGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.