Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012221

Physical Location & Seq

Genomic Coordinates Reverse (-)

22242531 .. 22243760

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCATTGAGTCAGCCAATAACACGGACCGATAGTGCACCCAATGGAGCATTTAGGACTTTTGGTCTCTACTGGTGCTACCATTGTGATCGTATGGTCAGAATTGCATCCTCTAACCCATCAGAGATCGCCTGTCCTCGATGTTTGAGGCAATTTGTCGTTGAGATTGAAACGAGACAACGGCCTCGGTTTACTTTCAACCATGCTACTCCGCCTTTTGATGCTTCTCCTGAGGCTCGTCTTCTCGAAGCTCTCTCGCTCATGTTTGAGCCTGCAACCATAGGTAGGTTTGGTGCAGACCCATTTCTTAGGGCAAGATCCAGAAACATCTTGGAACCTGAATCAAGACCCCGACCGCAACATCGAAGACGACACAGCCTTGACAATGTTAACAATGGTGGTTTACCTCTACCAAGAAGAACATATGTTATTCTCCGGCCCAATAATCCGACTAGTCCACTCGGAAACATAATTGCGCCACCAAATCAAGCACCACCACGGCATGTGAACTCACATGATTACTTTACTGGAGCATCAAGCTTAGAGCAGCTGATTGAACAACTAACACAAGACGATAGGCCTGGACCACCACCTGCGTCAGAACCCACCATTAATTCCCTACCATCTGTGAAAATAACACCACAACATCTAACTAACGACATGTCCCAATGCACAGTGTGCATGGAAGAATTCATTGTTGGTGGGGACGCAACGGAATTACCATGTAAACATATTTACCATAAAGATTGTATAGTCCCGTGGCTTAGGCTTAACAATTCTTGCCCTATCTGCCGCCGTGACCTGCCACTTGTCAACACCGTTGCTGAATCTCGAGAAAGGAGCAATCCTATTAGACAAGACATGCCTGAAAGAAGGCGTCCAAGGTGGATGCAACTCGGTAACATTTGGCCATTTAGAGCAAGATACCAAAGGGTTAGTCCAGAAGAAACAGCAAACCAGAATCCTCGAGATAACAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

327

Amino Acids

37.42

Weight (kDa)

9.27

Isoelectric Point (pI)

85.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_19	PF14369	24 - 56	2.6e-13	zinc-ribbon
zf-RING_2	PF13639	223 - 265	2.9e-14	Ring finger domain
zf-C3HC4_2	PF13923	223 - 264	1.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	223 - 251	5.5e-09	RING-like zinc finger
zf-C3HC4	PF00097	224 - 264	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	224 - 262	2.2e-06	RING-type zinc-finger
zf-rbx1	PF12678	241 - 265	9.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60360
fragaria_vesca	FvH4_2g26580 FvH4_2g26580
malus_domestica	MD08G1166600.v1.1 MD15G1352600.v1.1
prunus_persica	Prupe.1G501100_v2.0.a1
pyrus_communis	pycom08g14250
rosa_chinensis	RchiOBHm_Chr6g0295451
rosa_laevigata	RLG00000011800
rosa_multiflora	Rmu_co8384927.1_g000001 Rmu_sc0016348.1_g000002 Rmu_sc0019562.1_g000002
rosa_rugosa	Rorug06G0250900 Rorug06G0251000
rosa_samantha	Rh6AG364200 Rh6BG372500 Rh6CG378800 Rh6DG365200
rosa_wichuraiana	Rw6G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	601
Acc36I	ACCTGC	2 cut(s)	601, 810
AciI	CCGC	3 cut(s)	212, 356, 793
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	908
AcsI	RAATTY	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	877
AdeI	CACNNNGTG	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	3 cut(s)	170, 199, 557
AhdI	GACNNNNNGTC	1 cut(s)	63
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	4 cut(s)	251, 540, 550, 981
AluI	AGCT	4 cut(s)	251, 540, 550, 981
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	2 cut(s)	71, 169
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	2 cut(s)	831, 966
AoxI	GGCC	4 cut(s)	182, 437, 578, 908
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	547
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	27, 438, 584
AvaI	CYCGRG	2 cut(s)	831, 966
AvaII	GGWCC	2 cut(s)	27, 584
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	910
BbsI	GAAGAC	2 cut(s)	233, 373
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	2 cut(s)	127, 631
BceAI	ACGGC	3 cut(s)	197, 515, 780
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	71, 169
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	2 cut(s)	601, 810
BisI	GCNGC	2 cut(s)	548, 793
BlsI	GCNGC	2 cut(s)	549, 794
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	2 cut(s)	27, 584
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmeT110I	CYCGRG	2 cut(s)	831, 966
BmgT120I	GGNCC	3 cut(s)	27, 438, 584
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	4 cut(s)	116, 211, 542, 879
BpiI	GAAGAC	2 cut(s)	233, 373
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	764
BsaHI	GRCGYC	1 cut(s)	877
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	185, 497, 758, 881
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	77, 532
Bse21I	CCTNAGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	4 cut(s)	185, 497, 758, 881
BseGI	GGATG	2 cut(s)	107, 894
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	77, 532
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	4 cut(s)	184, 439, 580, 910
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	2 cut(s)	831, 966
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	3 cut(s)	649, 719, 740
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	71, 169
BsmFI	GGGAC	3 cut(s)	649, 719, 740
BsnI	GGCC	4 cut(s)	184, 439, 580, 910
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	831, 966
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	88, 126, 317
BspACI	CCGC	3 cut(s)	212, 356, 793
BspANI	GGCC	4 cut(s)	184, 439, 580, 910
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	2 cut(s)	601, 810
BspPI	GGATC	1 cut(s)	312
BspTNI	GGTCTC	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	77, 532
BssECI	CCNNGG	4 cut(s)	185, 497, 758, 881
BssMI	GATC	3 cut(s)	88, 126, 317
BssNI	GRCGYC	1 cut(s)	877
BssT1I	CCWWGG	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	676, 820
BstACI	GRCGYC	1 cut(s)	877
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	4 cut(s)	231, 308, 541, 764
BstDSI	CCRYGG	2 cut(s)	497, 758
BstF5I	GGATG	2 cut(s)	107, 894
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	3 cut(s)	91, 129, 320
BstMAI	GTCTC	2 cut(s)	71, 169
BstMBI	GATC	3 cut(s)	88, 126, 317
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	678, 789
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	3 cut(s)	506, 664, 865
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	2 cut(s)	233, 373
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	184, 439, 580, 910
BtgI	CCRYGG	2 cut(s)	497, 758
BtsCI	GGATG	2 cut(s)	107, 894
BtsIMutI	CAGTG	1 cut(s)	681
BveI	ACCTGC	2 cut(s)	601, 810
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	3 cut(s)	27, 438, 584
CpoI	CGGWCCG	1 cut(s)	27
CseI	GACGC	3 cut(s)	585, 716, 866
CspI	CGGWCCG	1 cut(s)	27
CviAII	CATG	8 cut(s)	203, 262, 503, 515, 661, 682, 723, 862
DdeI	CTNAG	4 cut(s)	231, 308, 541, 764
DpnI	GATC	3 cut(s)	90, 128, 319
DpnII	GATC	3 cut(s)	88, 126, 317
DraIII	CACNNNGTG	1 cut(s)	678
DriI	GACNNNNNGTC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	908
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	881
Eco147I	AGGCCT	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	27, 584
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	2 cut(s)	831, 966
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	8 cut(s)	206, 265, 506, 518, 664, 685, 726, 865
FaqI	GGGAC	3 cut(s)	649, 719, 740
FatI	CATG	8 cut(s)	202, 261, 502, 514, 660, 681, 722, 861
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	548, 793
FokI	GGATG	2 cut(s)	94, 901
Fsp4HI	GCNGC	2 cut(s)	548, 793
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	2 cut(s)	548, 793
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	4 cut(s)	184, 439, 580, 910
HapII	CCGG	1 cut(s)	436
HgaI	GACGC	3 cut(s)	585, 716, 866
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	877
Hin1II	CATG	8 cut(s)	206, 265, 506, 518, 664, 685, 726, 865
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	2 cut(s)	391, 814
HindII	GTYRAC	2 cut(s)	391, 814
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	4 cut(s)	10, 341, 827, 961
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	436
Hpy166II	GTNNAC	8 cut(s)	38, 192, 391, 404, 458, 508, 728, 814
Hpy188I	TCNGA	5 cut(s)	101, 124, 450, 464, 601
Hpy188III	TCNNGA	8 cut(s)	230, 245, 321, 345, 831, 833, 941, 968
Hpy8I	GTNNAC	8 cut(s)	38, 192, 391, 404, 458, 508, 728, 814
HpyAV	CCTTC	1 cut(s)	867
HpyCH4III	ACNGT	2 cut(s)	676, 820
HpyCH4V	TGCA	7 cut(s)	38, 107, 275, 296, 672, 681, 892
HpyF10VI	GCNNNNNNNGC	2 cut(s)	678, 789
HpyF3I	CTNAG	4 cut(s)	231, 308, 541, 764
Hsp92I	GRCGYC	1 cut(s)	877
Hsp92II	CATG	8 cut(s)	206, 265, 506, 518, 664, 685, 726, 865
HspAI	GCGC	1 cut(s)	476
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	88, 126, 317
LmnI	GCTCC	4 cut(s)	47, 530, 840, 978
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	4 cut(s)	116, 211, 542, 879
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	797, 899
MalI	GATC	3 cut(s)	90, 128, 319
MboI	GATC	3 cut(s)	88, 126, 317
MboII	GAAGA	5 cut(s)	233, 378, 429, 698, 956
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	910
MluCI	AATT	7 cut(s)	102, 152, 471, 613, 689, 716, 775
MluNI	TGGCCA	1 cut(s)	910
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	7 cut(s)	121, 141, 147, 195, 226, 417, 975
Mox20I	TGGCCA	1 cut(s)	910
MscI	TGGCCA	1 cut(s)	910
MseI	TTAA	3 cut(s)	390, 612, 771
Msp20I	TGGCCA	1 cut(s)	910
MspA1I	CMGCKG	1 cut(s)	550
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	678, 789
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	3 cut(s)	88, 126, 317
NlaIII	CATG	8 cut(s)	206, 265, 506, 518, 664, 685, 726, 865
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	797
NspI	RCATGY	3 cut(s)	506, 664, 865
PaeR7I	CTCGAG	2 cut(s)	831, 966
PaqCI	CACCTGC	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	580
PciI	ACATGT	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	341, 827, 961
PkrI	GCNGC	2 cut(s)	549, 794
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PscI	ACATGT	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	3 cut(s)	27, 438, 584
PsuI	RGATCY	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	550
Rsr2I	CGGWCCG	1 cut(s)	27
RsrII	CGGWCCG	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	390, 612, 771
SatI	GCNGC	2 cut(s)	548, 793
Sau3AI	GATC	3 cut(s)	88, 126, 317
Sau96I	GGNCC	3 cut(s)	27, 438, 584
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	4 cut(s)	116, 211, 542, 879
Sfr274I	CTCGAG	2 cut(s)	831, 966
SinI	GGWCC	2 cut(s)	27, 584
SlaI	CTCGAG	2 cut(s)	831, 966
SmlI	CTYRAG	2 cut(s)	831, 966
SmoI	CTYRAG	2 cut(s)	831, 966
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	7 cut(s)	102, 152, 471, 613, 689, 716, 775
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	3 cut(s)	212, 356, 793
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	2 cut(s)	676, 820
TaqI	TCGA	5 cut(s)	139, 246, 364, 832, 967
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	7 cut(s)	102, 152, 471, 613, 689, 716, 775
TauI	GCSGC	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	341, 827, 961
Tru1I	TTAA	3 cut(s)	390, 612, 771
Tru9I	TTAA	3 cut(s)	390, 612, 771
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	1 cut(s)	682
TspGWI	ACGGA	2 cut(s)	40, 728
TspRI	CASTG	1 cut(s)	681
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	27, 584
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	3 cut(s)	506, 664, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XhoI	CTCGAG	2 cut(s)	831, 966
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.