MD15G1352600.v1.1

E3 ubiquitin-protein ligase RING1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
42139657 .. 42141426
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1352600.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGTCATCGAGTCCAACTCGTTCGAGAGACATTAACATTGACGATGGCACCACATCACCGTACCAGCTCTACTGGTGCTACCACTGCAATCGGACGGTGCGGATTGCCTCCAACAGCCCATCAGAGATAGTCTGCCCTCGTTGTTTCGGGCAGTTTCTCTCCGAGTTTGACATGTCGATTAGGCCTAGACTGCTCGTAGACTACACCAGTTTCGATCCATCCCCAGAAGCTCGTCTGCTCGAAGCACTTTCCCTCATGTTCGACCCGTTCACGAGACCTTTTAACCGTGAATTATTTGACCCAGAGGCTGATCCCGGAGGACGACGCCACCATGAGCATGAGGGCGGGGGAACATGTATAGAACCTGAAGTTCGAGATTTGTGGACAAACAGGAGACGGCGGCGGCGGCGCAACCGTAGCTTTGATGGTGGAGAAAACTGGGAACTGGAACCCGAACCCCGTACGCGAAACCGTCCCAGGACTTGGATTGTTGTCCGACCCGTCGATGATCCTTATAATCCGGTGGGACCAACTTCCCTAACGCCTGAAAACCCAATACTACCTGTTCCACGTGGAGTCGATCTAGGAAACTACTTTTTCGGGCCGGGCCTTCAAGGACTGATCGAGGAATTAACTCAAAACGACAGGCCCGGCCCGCCTCCACTACCCGAATCCGCAATCAACGCCATACCCACTGTGGAAATAAGCGAGGCCCATTTGATCAACGACTCTTGCTGCCCAATTTGCATGGAGGAGTTTAAGGTTGGTGGAGCGGCGAGGGAGTTGCCATGCAATCACATATTCCACAGCGAATGTATTATTCCGTGGCTGAGGCTTCACAACTCTTGCCCGGTCTGCAGGGTCGAGATTCCGGTACCTGGTGGTGTATTGGACGAGTCGGAGGGCTCGAATAGTGGAGGAGAGAGGCGTGGAAGGCGGAGTCGGTTGGGATCATTGTGGCCATCTCGAGCAAGGTATCGTCGAATGGAGCGACAAGGTGGTAATGCTACTTCTACCTCTGGAGCTGGTGATCCATGGTGGAGTTCTTGCACTATTCTTTAG

Protein Analysis

354

Amino Acids

39.91

Weight (kDa)

5.97

Isoelectric Point (pI)

77.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_19 PF14369 22 - 55 9.2e-13 zinc-ribbon
zf-RING_2 PF13639 245 - 287 6.7e-14 Ring finger domain
zf-RING_11 PF17123 246 - 273 1.1e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 246 - 286 9.8e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 246 - 286 8.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 246 - 283 3.9e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012221)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
Acc65I GGTACC 1 cut(s) 874
AccB1I GGYRCC 2 cut(s) 47, 874
AccB7I CCANNNNNTGG 1 cut(s) 483
AccBSI CCGCTC 1 cut(s) 773
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 466
AciI CCGC 9 cut(s) 100, 345, 400, 403, 406, 656, 675, 773, 937
AclWI GGATC 5 cut(s) 209, 305, 503, 958, 1025
AcoI YGGCCR 1 cut(s) 959
AcuI CTGAAG 1 cut(s) 387
AcvI CACGTG 1 cut(s) 572
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 3 cut(s) 62, 463, 876
AfiI CCNNNNNNNGG 2 cut(s) 483, 878
AflIII ACRYGT 2 cut(s) 171, 353
AgsI TTSAA 1 cut(s) 614
AjnI CCWGG 2 cut(s) 476, 877
AluBI AGCT 4 cut(s) 67, 230, 420, 1025
AluI AGCT 4 cut(s) 67, 230, 420, 1025
Alw26I GTCTC 3 cut(s) 21, 268, 388
AlwI GGATC 5 cut(s) 209, 305, 503, 958, 1025
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 966
AoxI GGCC 7 cut(s) 182, 602, 607, 647, 652, 711, 959
ApeKI GCWGC 1 cut(s) 735
Asp718I GGTACC 1 cut(s) 874
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 6 cut(s) 527, 602, 607, 648, 653, 712
AsuC2I CCSGG 4 cut(s) 315, 606, 651, 851
AsuHPI GGTGA 2 cut(s) 48, 1040
AvaI CYCGRG 1 cut(s) 966
AvaII GGWCC 1 cut(s) 527
BalI TGGCCA 1 cut(s) 961
BanI GGYRCC 2 cut(s) 47, 874
BanII GRGCYC 1 cut(s) 908
BarI GAAGNNNNNNTAC 2 cut(s) 994, 1026
BauI CACGAG 1 cut(s) 271
BbrPI CACGTG 1 cut(s) 572
BbvCI CCTCAGC 1 cut(s) 830
BbvI GCAGC 1 cut(s) 722
BccI CCATC 5 cut(s) 38, 127, 226, 419, 970
BceAI ACGGC 1 cut(s) 413
BcgI CGANNNNNNTGC 2 cut(s) 766, 800
BciT130I CCWGG 2 cut(s) 478, 879
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 4 cut(s) 315, 606, 651, 851
BcoDI GTCTC 3 cut(s) 21, 268, 388
BfaI CTAG 2 cut(s) 186, 584
BfmI CTRYAG 1 cut(s) 856
BisI GCNGC 5 cut(s) 401, 404, 407, 736, 774
BlsI GCNGC 5 cut(s) 402, 405, 408, 737, 775
Bme1390I CCNGG 6 cut(s) 315, 478, 606, 651, 851, 879
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 966
BmgT120I GGNCC 6 cut(s) 527, 602, 607, 648, 653, 712
BmiI GGNNCC 4 cut(s) 49, 450, 528, 876
BmrFI CCNGG 6 cut(s) 315, 478, 606, 651, 851, 879
BmrI ACTGGG 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 448
BplI GAGNNNNNCTC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 830
BpuMI CCSGG 4 cut(s) 315, 606, 651, 851
BsaAI YACGTR 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 476, 824, 1034
BsaWI WCCGGW 2 cut(s) 520, 871
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 878
Bse1I ACTGG 4 cut(s) 77, 207, 443, 450
BseBI CCWGG 2 cut(s) 478, 879
BseDI CCNNGG 3 cut(s) 476, 824, 1034
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 483, 878
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 4 cut(s) 77, 207, 443, 450
BseRI GAGGAG 2 cut(s) 767, 933
BseXI GCAGC 1 cut(s) 722
Bsh1236I CGCG 1 cut(s) 466
BshFI GGCC 7 cut(s) 184, 604, 609, 649, 654, 713, 961
BshNI GGYRCC 2 cut(s) 47, 874
BsiHKCI CYCGRG 1 cut(s) 966
BsiSI CCGG 6 cut(s) 315, 521, 605, 651, 851, 872
BsiWI CGTACG 1 cut(s) 461
BslFI GGGAC 2 cut(s) 459, 540
BslI CCNNNNNNNGG 2 cut(s) 483, 878
BsmAI GTCTC 3 cut(s) 21, 268, 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 459, 540
BsnI GGCC 7 cut(s) 184, 604, 609, 649, 654, 713, 961
Bso31I GGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 966
Bsp1286I GDGCHC 1 cut(s) 908
Bsp143I GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
Bsp19I CCATGG 1 cut(s) 1034
BspACI CCGC 9 cut(s) 100, 345, 400, 403, 406, 656, 675, 773, 937
BspANI GGCC 7 cut(s) 184, 604, 609, 649, 654, 713, 961
BspCNI CTCAG 1 cut(s) 822
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 4 cut(s) 49, 450, 528, 876
BspMAI CTGCAG 1 cut(s) 860
BspPI GGATC 5 cut(s) 209, 305, 503, 958, 1025
BspT107I GGYRCC 2 cut(s) 47, 874
BspTNI GGTCTC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 773
BsrI ACTGG 4 cut(s) 77, 207, 443, 450
BssECI CCNNGG 3 cut(s) 476, 824, 1034
BssMI GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
BssNI GRCGYC 1 cut(s) 325
BssSI CACGAG 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 1034
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 478, 879
Bst4CI ACNGT 6 cut(s) 60, 97, 287, 416, 473, 697
BstACI GRCGYC 1 cut(s) 325
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 656
BstDEI CTNAG 1 cut(s) 830
BstDSI CCRYGG 2 cut(s) 824, 1034
BstF5I GGATG 1 cut(s) 218
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 8 cut(s) 217, 313, 511, 583, 624, 723, 953, 1033
BstMAI GTCTC 3 cut(s) 21, 268, 388
BstMBI GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
BstMWI GCNNNNNNNGC 9 cut(s) 84, 190, 406, 417, 655, 683, 744, 855, 934
BstNI CCWGG 2 cut(s) 478, 879
BstNSI RCATGY 2 cut(s) 175, 357
BstSCI CCNGG 6 cut(s) 313, 476, 604, 649, 849, 877
BstSFI CTRYAG 1 cut(s) 856
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 722
BsuRI GGCC 7 cut(s) 184, 604, 609, 649, 654, 713, 961
BtgI CCRYGG 2 cut(s) 824, 1034
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 82, 693
Cac8I GCNNGC 1 cut(s) 656
CaiI CAGNNNCTG 1 cut(s) 308
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 6 cut(s) 527, 602, 607, 648, 653, 712
CseI GACGC 1 cut(s) 333
CsiI ACCWGGT 1 cut(s) 877
Csp6I GTAC 3 cut(s) 61, 462, 875
CviAII CATG 8 cut(s) 172, 256, 332, 338, 354, 748, 789, 1035
CviQI GTAC 3 cut(s) 61, 462, 875
DdeI CTNAG 1 cut(s) 830
DpnI GATC 8 cut(s) 216, 312, 510, 582, 623, 722, 952, 1032
DpnII GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
EaeI YGGCCR 1 cut(s) 959
EciI GGCGGA 1 cut(s) 952
Eco130I CCWWGG 1 cut(s) 1034
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 908
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 387
Eco72I CACGTG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 966
EcoRII CCWGG 2 cut(s) 476, 877
EcoT14I CCWWGG 1 cut(s) 1034
EcoT38I GRGCYC 1 cut(s) 908
ErhI CCWWGG 1 cut(s) 1034
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 8 cut(s) 175, 259, 335, 341, 357, 751, 792, 1038
FaqI GGGAC 2 cut(s) 459, 540
FatI CATG 8 cut(s) 171, 255, 331, 337, 353, 747, 788, 1034
FauI CCCGC 2 cut(s) 338, 663
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 401, 404, 407, 736, 774
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 908
Fsp4HI GCNGC 5 cut(s) 401, 404, 407, 736, 774
FspBI CTAG 2 cut(s) 186, 584
GlaI GCGC 1 cut(s) 410
GluI GCNGC 5 cut(s) 401, 404, 407, 736, 774
GsuI CTGGAG 1 cut(s) 1041
HaeIII GGCC 7 cut(s) 184, 604, 609, 649, 654, 713, 961
HapII CCGG 6 cut(s) 315, 521, 605, 651, 851, 872
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 8 cut(s) 175, 259, 335, 341, 357, 751, 792, 1038
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 7 cut(s) 10, 576, 671, 728, 868, 896, 940
HpaII CCGG 6 cut(s) 315, 521, 605, 651, 851, 872
HphI GGTGA 2 cut(s) 48, 1040
Hpy166II GTNNAC 3 cut(s) 199, 270, 384
Hpy188I TCNGA 5 cut(s) 93, 124, 163, 497, 901
Hpy188III TCNNGA 6 cut(s) 24, 271, 374, 865, 966, 1020
Hpy8I GTNNAC 3 cut(s) 199, 270, 384
Hpy99I CGWCG 3 cut(s) 327, 506, 984
HpyAV CCTTC 2 cut(s) 620, 927
HpyCH4III ACNGT 6 cut(s) 60, 97, 287, 416, 473, 697
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 5 cut(s) 87, 747, 792, 858, 1050
HpyF10VI GCNNNNNNNGC 9 cut(s) 84, 190, 406, 417, 655, 683, 744, 855, 934
HpyF3I CTNAG 1 cut(s) 830
HpySE526I ACGT 1 cut(s) 571
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 8 cut(s) 175, 259, 335, 341, 357, 751, 792, 1038
HspAI GCGC 1 cut(s) 409
KpnI GGTACC 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
LmnI GCTCC 3 cut(s) 770, 988, 1022
Lsp1109I GCAGC 1 cut(s) 722
MabI ACCWGGT 1 cut(s) 877
MaeI CTAG 2 cut(s) 186, 584
MaeII ACGT 1 cut(s) 571
MalI GATC 8 cut(s) 216, 312, 510, 582, 623, 722, 952, 1032
MbiI CCGCTC 1 cut(s) 773
MboI GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
MhlI GDGCHC 1 cut(s) 908
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 3 cut(s) 290, 629, 741
MluNI TGGCCA 1 cut(s) 961
MlyI GAGTC 5 cut(s) 19, 585, 722, 905, 949
MmeI TCCRAC 4 cut(s) 38, 135, 520, 879
Mox20I TGGCCA 1 cut(s) 961
MscI TGGCCA 1 cut(s) 961
MseI TTAA 4 cut(s) 33, 282, 632, 759
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 961
MspI CCGG 6 cut(s) 315, 521, 605, 651, 851, 872
MspR9I CCNGG 6 cut(s) 315, 478, 606, 651, 851, 879
MvaI CCWGG 2 cut(s) 478, 879
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 9 cut(s) 84, 190, 406, 417, 655, 683, 744, 855, 934
NciI CCSGG 4 cut(s) 315, 606, 651, 851
NcoI CCATGG 1 cut(s) 1034
NdeII GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
NlaIII CATG 8 cut(s) 175, 259, 335, 341, 357, 751, 792, 1038
NlaIV GGNNCC 4 cut(s) 49, 450, 528, 876
NspI RCATGY 2 cut(s) 175, 357
PaeR7I CTCGAG 1 cut(s) 966
PceI AGGCCT 1 cut(s) 184
PciI ACATGT 2 cut(s) 171, 353
PcsI WCGNNNNNNNCGW 2 cut(s) 905, 988
PfeI GAWTC 2 cut(s) 671, 868
Pfl23II CGTACG 1 cut(s) 461
PflMI CCANNNNNTGG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 5 cut(s) 402, 405, 408, 737, 775
PleI GAGTC 5 cut(s) 18, 584, 722, 904, 948
PmaCI CACGTG 1 cut(s) 572
PmlI CACGTG 1 cut(s) 572
PpsI GAGTC 5 cut(s) 18, 584, 722, 904, 948
Ppu21I YACGTR 1 cut(s) 572
PscI ACATGT 2 cut(s) 171, 353
PsiI TTATAA 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 476, 877
PspCI CACGTG 1 cut(s) 572
PspGI CCWGG 2 cut(s) 476, 877
PspLI CGTACG 1 cut(s) 461
PspN4I GGNNCC 4 cut(s) 49, 450, 528, 876
PspPI GGNCC 6 cut(s) 527, 602, 607, 648, 653, 712
PstI CTGCAG 1 cut(s) 860
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 3 cut(s) 62, 463, 876
RsaNI GTAC 3 cut(s) 61, 462, 875
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 4 cut(s) 33, 282, 632, 759
SatI GCNGC 5 cut(s) 401, 404, 407, 736, 774
Sau3AI GATC 8 cut(s) 214, 310, 508, 580, 621, 720, 950, 1030
Sau96I GGNCC 6 cut(s) 527, 602, 607, 648, 653, 712
SchI GAGTC 5 cut(s) 19, 585, 722, 905, 949
ScrFI CCNGG 6 cut(s) 315, 478, 606, 651, 851, 879
SduI GDGCHC 1 cut(s) 908
SexAI ACCWGGT 1 cut(s) 877
SfcI CTRYAG 1 cut(s) 856
Sfr274I CTCGAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 966
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 966
SmoI CTYRAG 1 cut(s) 966
Sse9I AATT 3 cut(s) 290, 629, 741
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 9 cut(s) 100, 345, 400, 403, 406, 656, 675, 773, 937
SspMI CTAG 2 cut(s) 186, 584
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 6 cut(s) 313, 476, 604, 649, 849, 877
StyI CCWWGG 1 cut(s) 1034
TaaI ACNGT 6 cut(s) 60, 97, 287, 416, 473, 697
TaiI ACGT 1 cut(s) 574
TasI AATT 3 cut(s) 290, 629, 741
TauI GCSGC 4 cut(s) 403, 406, 409, 776
TfiI GAWTC 2 cut(s) 671, 868
Tru1I TTAA 4 cut(s) 33, 282, 632, 759
Tru9I TTAA 4 cut(s) 33, 282, 632, 759
TscAI CASTG 2 cut(s) 89, 700
TseI GCWGC 1 cut(s) 735
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 2 cut(s) 89, 700
Van91I CCANNNNNTGG 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 527
XceI RCATGY 2 cut(s) 175, 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XhoI CTCGAG 1 cut(s) 966
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 2 cut(s) 186, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.