Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019562.1

Orthogroup ID

OG0012221

Physical Location & Seq

Genomic Coordinates Forward (+)

4283 .. 5251

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019562.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtctctgagtcctcctcgtcctgaaaacaactctgaggctaggccaatctaccaggtctactggtgctaccaatgccaaaggcaggtcaggatcgcctccactcctgacccagtcttctgcccgcgctgtttcgggcagttcctcgtcgaaatggagaccacattcaggcccagtcgacgcttcatcgacttcgaatccaccccagaagcgcatttgctagaagcgctttccctcatgctcgacccgtccatccggcttttcgatagcggagcactccagtcggaacccgaaacccgacgttcccgcccaagcaggcgtagaagaaaccgtagcttcgatgatgacatagagcgcggggacccgacccacccggaactcggtacccgaaaccgacccgggacgtggatcatagtacgacccatcgacgacgatccgattcaaccctttcgcagatcaagagataatcaaaacctcgttttaccgataccacatggagtggatccgggaaactactttgtcgggtcggggctcatggggctcatcgaggagctgacccaaaatgaccgacccggaccggctcccttacccgaaccggcaatcaactcaatcccaaccgttaagattagcgaggcccatttgagcaacgacccgaattgtcctatttgcatggaggagtttaaggtggggggagaggcgagagagctgccatgcaagcatatataccacaatgaatgcattgtgccgtggctgaggcttcacaattcttgcccggtttgccgggttgagattccgatttcgactgacgaggagtcggagggttcgaacagcggtggagggaggagggggcggcggggcatgaggtggagtcggctcgggtctttgtggccgtttcggaggagatatcgccggattccggttcagggcggaaatgatgatgatcatggtgacacttcgagagttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

322

Amino Acids

36.76

Weight (kDa)

6.72

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60360
fragaria_vesca	FvH4_2g26580 FvH4_2g26580
malus_domestica	MD08G1166600.v1.1 MD15G1352600.v1.1
prunus_persica	Prupe.1G501100_v2.0.a1
pyrus_communis	pycom08g14250
rosa_chinensis	RchiOBHm_Chr6g0295451
rosa_laevigata	RLG00000011800
rosa_multiflora	Rmu_co8384927.1_g000001 Rmu_sc0016348.1_g000002 Rmu_sc0019562.1_g000002
rosa_rugosa	Rorug06G0250900 Rorug06G0251000
rosa_samantha	Rh6AG364200 Rh6BG372500 Rh6CG378800 Rh6DG365200
rosa_wichuraiana	Rw6G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	2 cut(s)	60, 178
AccII	CGCG	2 cut(s)	127, 357
AciI	CCGC	8 cut(s)	125, 270, 307, 357, 831, 850, 853, 927
AclWI	GGATC	5 cut(s)	101, 416, 428, 497, 510
AcoI	YGGCCR	1 cut(s)	887
AfaI	GTAC	2 cut(s)	385, 417
AfeI	AGCGCT	1 cut(s)	228
AfiI	CCNNNNNNNGG	6 cut(s)	85, 168, 380, 405, 916, 923
AgsI	TTSAA	1 cut(s)	443
AhdI	GACNNNNNGTC	1 cut(s)	811
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	3 cut(s)	336, 553, 706
AluI	AGCT	3 cut(s)	336, 553, 706
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	9, 152
AlwI	GGATC	5 cut(s)	101, 416, 428, 497, 510
Ama87I	CYCGRG	2 cut(s)	398, 875
Aor51HI	AGCGCT	1 cut(s)	228
AoxI	GGCC	4 cut(s)	44, 170, 633, 887
ApeKI	GCWGC	1 cut(s)	706
Asp718I	GGTACC	1 cut(s)	383
AspLEI	GCGC	4 cut(s)	129, 214, 229, 357
AspS9I	GGNCC	4 cut(s)	171, 361, 575, 634
AsuC2I	CCSGG	7 cut(s)	374, 399, 400, 507, 573, 773, 782
AsuHPI	GGTGA	1 cut(s)	959
AsuII	TTCGAA	2 cut(s)	195, 824
AvaI	CYCGRG	2 cut(s)	398, 875
AvaII	GGWCC	2 cut(s)	361, 575
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	534, 543
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	752
BbvI	GCAGC	1 cut(s)	693
BccI	CCATC	2 cut(s)	260, 431
BceAI	ACGGC	2 cut(s)	730, 874
BcgI	CGANNNNNNTGC	4 cut(s)	264, 298, 688, 722
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	1 cut(s)	940
BcnI	CCSGG	7 cut(s)	374, 399, 400, 507, 573, 773, 782
BcoDI	GTCTC	2 cut(s)	9, 152
BfaI	CTAG	2 cut(s)	42, 221
BfoI	RGCGCY	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	707, 851
BlsI	GCNGC	2 cut(s)	708, 852
Bme1390I	CCNGG	8 cut(s)	56, 374, 399, 400, 507, 573, 773, 782
Bme18I	GGWCC	2 cut(s)	361, 575
BmeRI	GACNNNNNGTC	1 cut(s)	811
BmeT110I	CYCGRG	2 cut(s)	398, 875
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	4 cut(s)	171, 361, 575, 634
BmiI	GGNNCC	6 cut(s)	288, 362, 363, 385, 504, 582
BmrFI	CCNGG	8 cut(s)	56, 374, 399, 400, 507, 573, 773, 782
BmrI	ACTGGG	2 cut(s)	107, 168
BmuI	ACTGGG	2 cut(s)	107, 168
BpiI	GAAGAC	1 cut(s)	109
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	752
Bpu14I	TTCGAA	2 cut(s)	195, 824
BpuMI	CCSGG	7 cut(s)	374, 399, 400, 507, 573, 773, 782
BsaBI	GATNNNNATC	1 cut(s)	939
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	398, 746
BsaWI	WCCGGW	1 cut(s)	916
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 168, 380, 405, 916, 923
Bse118I	RCCGGY	2 cut(s)	577, 595
Bse1I	ACTGG	4 cut(s)	68, 113, 174, 280
Bse8I	GATNNNNATC	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	398, 746
BseGI	GGATG	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	6 cut(s)	85, 168, 380, 405, 916, 923
BseMII	CTCAG	2 cut(s)	27, 743
BseNI	ACTGG	4 cut(s)	68, 113, 174, 280
BseRI	GAGGAG	6 cut(s)	6, 563, 689, 824, 856, 913
BseXI	GCAGC	1 cut(s)	693
Bsh1236I	CGCG	2 cut(s)	127, 357
BshFI	GGCC	4 cut(s)	46, 172, 635, 889
BshNI	GGYRCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	2 cut(s)	398, 875
BslFI	GGGAC	2 cut(s)	374, 415
BslI	CCNNNNNNNGG	6 cut(s)	85, 168, 380, 405, 916, 923
BsmAI	GTCTC	2 cut(s)	9, 152
BsmFI	GGGAC	2 cut(s)	374, 415
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	4 cut(s)	46, 172, 635, 889
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	398, 875
Bsp119I	TTCGAA	2 cut(s)	195, 824
Bsp1286I	GDGCHC	3 cut(s)	277, 534, 543
Bsp143I	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
BspACI	CCGC	8 cut(s)	125, 270, 307, 357, 831, 850, 853, 927
BspANI	GGCC	4 cut(s)	46, 172, 635, 889
BspCNI	CTCAG	2 cut(s)	28, 744
BspFNI	CGCG	2 cut(s)	127, 357
BspLI	GGNNCC	6 cut(s)	288, 362, 363, 385, 504, 582
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	5 cut(s)	101, 416, 428, 497, 510
BspT104I	TTCGAA	2 cut(s)	195, 824
BspT107I	GGYRCC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	577, 595
BsrI	ACTGG	4 cut(s)	68, 113, 174, 280
BssAI	RCCGGY	2 cut(s)	577, 595
BssECI	CCNNGG	2 cut(s)	398, 746
BssMI	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	332, 619
BstBI	TTCGAA	2 cut(s)	195, 824
BstC8I	GCNNGC	3 cut(s)	125, 317, 716
BstDEI	CTNAG	3 cut(s)	8, 36, 752
BstDSI	CCRYGG	1 cut(s)	746
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	127, 357
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	4 cut(s)	129, 214, 229, 357
BstKTI	GATC	6 cut(s)	96, 411, 436, 458, 505, 943
BstMAI	GTCTC	2 cut(s)	9, 152
BstMBI	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 226, 538, 715, 777
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	8 cut(s)	54, 372, 397, 398, 505, 571, 771, 780
BstUI	CGCG	2 cut(s)	127, 357
BstV1I	GCAGC	1 cut(s)	693
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	46, 172, 635, 889
BtgI	CCRYGG	1 cut(s)	746
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	125, 317, 716
CfoI	GCGC	4 cut(s)	129, 214, 229, 357
Cfr10I	RCCGGY	2 cut(s)	577, 595
Cfr13I	GGNCC	4 cut(s)	171, 361, 575, 634
Cfr9I	CCCGGG	1 cut(s)	398
CpoI	CGGWCCG	1 cut(s)	575
CseI	GACGC	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	384, 416
CspI	CGGWCCG	1 cut(s)	575
CviAII	CATG	7 cut(s)	238, 494, 535, 670, 711, 859, 944
CviQI	GTAC	2 cut(s)	384, 416
DdeI	CTNAG	3 cut(s)	8, 36, 752
DpnI	GATC	6 cut(s)	95, 410, 435, 457, 504, 942
DpnII	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
DriI	GACNNNNNGTC	1 cut(s)	811
EaeI	YGGCCR	1 cut(s)	887
Eam1105I	GACNNNNNGTC	1 cut(s)	811
EciI	GGCGGA	1 cut(s)	942
Eco24I	GRGCYC	2 cut(s)	534, 543
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	905
Eco47I	GGWCC	2 cut(s)	361, 575
Eco47III	AGCGCT	1 cut(s)	228
Eco88I	CYCGRG	2 cut(s)	398, 875
EcoO109I	RGGNCCY	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	905
EcoT22I	ATGCAT	1 cut(s)	740
EcoT38I	GRGCYC	2 cut(s)	534, 543
FaeI	CATG	7 cut(s)	241, 497, 538, 673, 714, 862, 947
FaqI	GGGAC	2 cut(s)	374, 415
FatI	CATG	7 cut(s)	237, 493, 534, 669, 710, 858, 943
FauI	CCCGC	4 cut(s)	132, 314, 350, 846
FbaI	TGATCA	1 cut(s)	940
FblI	GTMKAC	2 cut(s)	60, 178
Fnu4HI	GCNGC	2 cut(s)	707, 851
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	534, 543
Fsp4HI	GCNGC	2 cut(s)	707, 851
FspBI	CTAG	2 cut(s)	42, 221
GlaI	GCGC	4 cut(s)	128, 213, 228, 356
GluI	GCNGC	2 cut(s)	707, 851
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	4 cut(s)	46, 172, 635, 889
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	4 cut(s)	129, 214, 229, 357
Hin1II	CATG	7 cut(s)	241, 497, 538, 673, 714, 862, 947
Hin6I	GCGC	4 cut(s)	127, 212, 227, 355
HinP1I	GCGC	4 cut(s)	127, 212, 227, 355
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HinfI	GANTC	7 cut(s)	10, 197, 439, 790, 812, 868, 913
HphI	GGTGA	1 cut(s)	959
Hpy166II	GTNNAC	2 cut(s)	61, 179
Hpy188I	TCNGA	7 cut(s)	9, 37, 286, 438, 795, 817, 897
Hpy188III	TCNNGA	5 cut(s)	23, 91, 107, 459, 957
Hpy8I	GTNNAC	2 cut(s)	61, 179
Hpy99I	CGWCG	5 cut(s)	152, 183, 303, 431, 434
HpyCH4III	ACNGT	2 cut(s)	332, 619
HpyCH4IV	ACGT	2 cut(s)	301, 404
HpyCH4V	TGCA	3 cut(s)	669, 714, 738
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 226, 538, 715, 777
HpyF3I	CTNAG	3 cut(s)	8, 36, 752
HpySE526I	ACGT	2 cut(s)	301, 404
Hsp92II	CATG	7 cut(s)	241, 497, 538, 673, 714, 862, 947
HspAI	GCGC	4 cut(s)	127, 212, 227, 355
KflI	GGGWCCC	1 cut(s)	361
KpnI	GGTACC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
LmnI	GCTCC	3 cut(s)	272, 550, 586
Lsp1109I	GCAGC	1 cut(s)	693
MabI	ACCWGGT	1 cut(s)	54
MaeI	CTAG	2 cut(s)	42, 221
MaeII	ACGT	2 cut(s)	301, 404
MaeIII	GTNAC	1 cut(s)	947
MalI	GATC	6 cut(s)	95, 410, 435, 457, 504, 942
MboI	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
MboII	GAAGA	2 cut(s)	109, 336
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	3 cut(s)	277, 534, 543
MluCI	AATT	2 cut(s)	655, 763
MlyI	GAGTC	3 cut(s)	19, 821, 877
MmeI	TCCRAC	2 cut(s)	264, 795
Mph1103I	ATGCAT	1 cut(s)	740
MseI	TTAA	2 cut(s)	621, 681
MspA1I	CMGCKG	1 cut(s)	831
MspR9I	CCNGG	8 cut(s)	56, 374, 399, 400, 507, 573, 773, 782
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	2 cut(s)	127, 357
MwoI	GCNNNNNNNGC	5 cut(s)	75, 226, 538, 715, 777
NciI	CCSGG	7 cut(s)	374, 399, 400, 507, 573, 773, 782
NdeII	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
NlaIII	CATG	7 cut(s)	241, 497, 538, 673, 714, 862, 947
NlaIV	GGNNCC	6 cut(s)	288, 362, 363, 385, 504, 582
NmuCI	GTSAC	1 cut(s)	947
NsiI	ATGCAT	1 cut(s)	740
NspV	TTCGAA	2 cut(s)	195, 824
PcsI	WCGNNNNNNNCGW	1 cut(s)	821
PctI	GAATGC	1 cut(s)	740
PfeI	GAWTC	4 cut(s)	197, 439, 790, 913
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	708, 852
PleI	GAGTC	3 cut(s)	18, 820, 876
PpsI	GAGTC	3 cut(s)	18, 820, 876
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	6 cut(s)	288, 362, 363, 385, 504, 582
PspPI	GGNCC	4 cut(s)	171, 361, 575, 634
PspPPI	RGGWCCY	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	385, 417
RsaNI	GTAC	2 cut(s)	384, 416
Rsr2I	CGGWCCG	1 cut(s)	575
RsrII	CGGWCCG	1 cut(s)	575
SalI	GTCGAC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	621, 681
SatI	GCNGC	2 cut(s)	707, 851
Sau3AI	GATC	6 cut(s)	93, 408, 433, 455, 502, 940
Sau96I	GGNCC	4 cut(s)	171, 361, 575, 634
SchI	GAGTC	3 cut(s)	19, 821, 877
ScrFI	CCNGG	8 cut(s)	56, 374, 399, 400, 507, 573, 773, 782
SduI	GDGCHC	3 cut(s)	277, 534, 543
SexAI	ACCWGGT	1 cut(s)	54
SfuI	TTCGAA	2 cut(s)	195, 824
SinI	GGWCC	2 cut(s)	361, 575
SmaI	CCCGGG	1 cut(s)	400
Sse9I	AATT	2 cut(s)	655, 763
SsiI	CCGC	8 cut(s)	125, 270, 307, 357, 831, 850, 853, 927
SspMI	CTAG	2 cut(s)	42, 221
StyD4I	CCNGG	8 cut(s)	54, 372, 397, 398, 505, 571, 771, 780
TaaI	ACNGT	2 cut(s)	332, 619
TaiI	ACGT	2 cut(s)	304, 407
TaqII	GACCGA	1 cut(s)	582
TasI	AATT	2 cut(s)	655, 763
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	197, 439, 790, 913
Tru1I	TTAA	2 cut(s)	621, 681
Tru9I	TTAA	2 cut(s)	621, 681
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	2 cut(s)	175, 747
TspMI	CCCGGG	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	361, 575
XmaI	CCCGGG	1 cut(s)	398
XmiI	GTMKAC	2 cut(s)	60, 178
XspI	CTAG	2 cut(s)	42, 221
Zsp2I	ATGCAT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.