Prupe.1G501100_v2.0.a1

E3 ubiquitin-protein ligase RING1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
41471275 .. 41473204
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G501100.1

Sequence Viewer

Length: 1086 bp
ATGTCTCTGAGCCCACCTCGCGAAAGAGACATTGACATCAACAATGGCAGCACAACCTACCAGCTCTACTGGTGCTACCAATGCAATCGAACGGTGAGGATCACCTCCACCACCAACCCATCAGAGATAGTCTGCCCTCGTTGTTTTGGACAGTTCCTCTCGGAGTTTGACATGTCAATCAGGCCTAGAGATCTCCTAGACTACACCGACTTCGATCCTTCCCCAGAAGCTCGTTTGCTGGAAGTACTTTCTCTCATGTTCGACCCTCCTATGGGTGCTTTCAACCATGGATTGGATGACCCAGAAGCAGACGCAAGAGAACGTCCCTGGTTTTGGCGACGCCAACTTGGTCAAGAGGGAAGAGGCATGGAAGCAGAAACTCAAGAGTCGAGGACAAATAGGCGCAGGCGACGCAACCCTAGCTTTGATGGTAGAGAGAATTGGGACCCAGAACCCGAACCCCGTGCTCGAAATCGTCCTAGGACTTGGATTATAGTCCGTCCCATCGAGGATCCTCCTAGTTCGCTGGGCCCCATTCCCAGCTCACAAGAAAATCCAATACTACCAGTGCCACGTGGAGTCGAACTTGGAAACTACTTTTTTGGGTCGGGTCTCCAAGGACTAATCGAAGAGCTGACCCAAAACGACAGGCCCGGCCCGCCTCCAGTACCGGAAACAGACATCAACGCATTACCAACAGTGAAAATCACAGAGACCCATTTGAGCAACGACCCTTGTTGCCCAGTTTGCATGGAGGAGTTTAAAGTTGGCGCAGAGGCGAGGGAGTTGCCATGCAATCACATATACCACAGCGACTGCATTGTTCCATGGCTGAGGCTGCACAACTCTTGCCCAGTTTGCCGGGTCGGGATTCCGGTTTGTGGCGACGGGTCGGAGGAGTCGGAGGGTTCGAATAATGAGAGGAGGAGTCAGAGGTGCTTGAGTTGGAGTAGGCTGAGGTCTCTGTGGCCATTTCGAGCAAGGTATAGAAGAATTCAACCACAGGGGGATAATGAGCAACATAGTGCTGCTACTTCTGCTTCTAGAGTTGCTGAGCCATGGTGGCGTTCTTGCACTATCCTCTAA

Protein Analysis

362

Amino Acids

41.42

Weight (kDa)

5.47

Isoelectric Point (pI)

68.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012221)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 292
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 659
AclWI GGATC 4 cut(s) 107, 209, 506, 519
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 1 cut(s) 993
AcvI CACGTG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 2 cut(s) 246, 669
AfiI CCNNNNNNNGG 5 cut(s) 271, 272, 292, 333, 881
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 283, 998
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 5 cut(s) 64, 230, 423, 543, 634
AluI AGCT 5 cut(s) 64, 230, 423, 543, 634
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 5 cut(s) 9, 21, 617, 707, 966
AlwI GGATC 4 cut(s) 107, 209, 506, 519
AlwNI CAGNNNCTG 1 cut(s) 816
AoxI GGCC 5 cut(s) 182, 529, 650, 655, 968
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 3 cut(s) 48, 838, 1028
ApoI RAATTY 1 cut(s) 993
AspA2I CCTAGG 1 cut(s) 479
AspLEI GCGC 2 cut(s) 405, 773
AspS9I GGNCC 5 cut(s) 445, 529, 530, 651, 656
AsuC2I CCSGG 2 cut(s) 654, 863
AsuHPI GGTGA 2 cut(s) 94, 106
AsuII TTCGAA 1 cut(s) 911
AvaII GGWCC 1 cut(s) 445
AvrII CCTAGG 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 1 cut(s) 970
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 2 cut(s) 14, 533
BbrPI CACGTG 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 2 cut(s) 833, 956
BbvI GCAGC 3 cut(s) 60, 825, 1015
BccI CCATC 3 cut(s) 127, 422, 512
BcgI CGANNNNNNTGC 4 cut(s) 446, 480, 769, 803
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 2 cut(s) 654, 863
BcoDI GTCTC 5 cut(s) 9, 21, 617, 707, 966
BfaI CTAG 6 cut(s) 186, 197, 420, 480, 519, 1044
BglI GCCNNNNNGGC 1 cut(s) 1063
BglII AGATCT 1 cut(s) 190
BisI GCNGC 3 cut(s) 49, 839, 1029
BlnI CCTAGG 1 cut(s) 479
BlpI GCTNAGC 1 cut(s) 1053
BlsI GCNGC 3 cut(s) 50, 840, 1030
BmcAI AGTACT 1 cut(s) 246
Bme1390I CCNGG 3 cut(s) 328, 654, 863
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 5 cut(s) 445, 529, 530, 651, 656
BmiI GGNNCC 5 cut(s) 446, 447, 513, 531, 532
BmrFI CCNGG 3 cut(s) 328, 654, 863
BmrI ACTGGG 2 cut(s) 737, 848
BmuI ACTGGG 2 cut(s) 737, 848
BplI GAGNNNNNCTC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 2 cut(s) 833, 956
Bpu1102I GCTNAGC 1 cut(s) 1053
Bpu14I TTCGAA 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 366, 961
BpuMI CCSGG 2 cut(s) 654, 863
BsaAI YACGTR 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 340
BsaI GGTCTC 3 cut(s) 617, 707, 966
BsaJI CCNNGG 6 cut(s) 286, 326, 479, 616, 827, 1058
BsaWI WCCGGW 2 cut(s) 670, 874
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 272, 292, 333, 881
Bse1I ACTGG 5 cut(s) 74, 566, 665, 743, 854
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 6 cut(s) 286, 326, 479, 616, 827, 1058
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 5 cut(s) 271, 272, 292, 333, 881
BseMII CTCAG 3 cut(s) 824, 947, 1044
BseNI ACTGG 5 cut(s) 74, 566, 665, 743, 854
BseRI GAGGAG 4 cut(s) 770, 911, 937, 940
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 3 cut(s) 60, 825, 1015
BseYI CCCAGC 2 cut(s) 526, 539
BsgI GTGCAG 1 cut(s) 824
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 5 cut(s) 184, 531, 652, 657, 970
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 4 cut(s) 654, 671, 862, 875
BslFI GGGAC 3 cut(s) 309, 458, 486
BslI CCNNNNNNNGG 5 cut(s) 271, 272, 292, 333, 881
BsmAI GTCTC 5 cut(s) 9, 21, 617, 707, 966
BsmFI GGGAC 3 cut(s) 309, 458, 486
BsnI GGCC 5 cut(s) 184, 531, 652, 657, 970
Bso31I GGTCTC 3 cut(s) 617, 707, 966
Bsp119I TTCGAA 1 cut(s) 911
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 14, 469, 533
Bsp143I GATC 4 cut(s) 99, 190, 214, 511
Bsp1720I GCTNAGC 1 cut(s) 1053
Bsp19I CCATGG 3 cut(s) 286, 827, 1058
Bsp68I TCGCGA 1 cut(s) 21
BspACI CCGC 1 cut(s) 659
BspANI GGCC 5 cut(s) 184, 531, 652, 657, 970
BspCNI CTCAG 3 cut(s) 825, 948, 1045
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 5 cut(s) 446, 447, 513, 531, 532
BspPI GGATC 4 cut(s) 107, 209, 506, 519
BspQI GCTCTTC 1 cut(s) 624
BspT104I TTCGAA 1 cut(s) 911
BspTNI GGTCTC 3 cut(s) 617, 707, 966
BsrI ACTGG 5 cut(s) 74, 566, 665, 743, 854
BssECI CCNNGG 6 cut(s) 286, 326, 479, 616, 827, 1058
BssMI GATC 4 cut(s) 99, 190, 214, 511
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 5 cut(s) 286, 479, 616, 827, 1058
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 94, 153, 700
Bst6I CTCTTC 2 cut(s) 355, 624
BstACI GRCGYC 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 575
BstBI TTCGAA 1 cut(s) 911
BstC8I GCNNGC 2 cut(s) 407, 659
BstDEI CTNAG 4 cut(s) 8, 833, 956, 1053
BstDSI CCRYGG 3 cut(s) 286, 827, 1058
BstF5I GGATG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 405, 773
BstKTI GATC 4 cut(s) 102, 193, 217, 514
BstMAI GTCTC 5 cut(s) 9, 21, 617, 707, 966
BstMBI GATC 4 cut(s) 99, 190, 214, 511
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 3 cut(s) 326, 652, 861
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 60, 825, 1015
BstX2I RGATCY 2 cut(s) 190, 511
BstYI RGATCY 2 cut(s) 190, 511
BsuRI GGCC 5 cut(s) 184, 531, 652, 657, 970
BtgI CCRYGG 3 cut(s) 286, 827, 1058
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 573, 705
BtuMI TCGCGA 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 407, 659
CaiI CAGNNNCTG 1 cut(s) 816
CfoI GCGC 2 cut(s) 405, 773
Cfr13I GGNCC 5 cut(s) 445, 529, 530, 651, 656
CseI GACGC 3 cut(s) 320, 348, 420
Csp6I GTAC 2 cut(s) 245, 668
CviAII CATG 8 cut(s) 172, 256, 287, 367, 751, 792, 828, 1059
CviQI GTAC 2 cut(s) 245, 668
DdeI CTNAG 4 cut(s) 8, 833, 956, 1053
DpnI GATC 4 cut(s) 101, 192, 216, 513
DpnII GATC 4 cut(s) 99, 190, 214, 511
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 2 cut(s) 355, 624
EarI CTCTTC 2 cut(s) 355, 624
Eco130I CCWWGG 5 cut(s) 286, 479, 616, 827, 1058
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 2 cut(s) 14, 533
Eco31I GGTCTC 3 cut(s) 617, 707, 966
Eco47I GGWCC 1 cut(s) 445
Eco72I CACGTG 1 cut(s) 575
EcoO109I RGGNCCY 2 cut(s) 445, 530
EcoRI GAATTC 1 cut(s) 993
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 5 cut(s) 286, 479, 616, 827, 1058
EcoT38I GRGCYC 2 cut(s) 14, 533
ErhI CCWWGG 5 cut(s) 286, 479, 616, 827, 1058
FaeI CATG 8 cut(s) 175, 259, 290, 370, 754, 795, 831, 1062
FaqI GGGAC 3 cut(s) 309, 458, 486
FatI CATG 8 cut(s) 171, 255, 286, 366, 750, 791, 827, 1058
FauI CCCGC 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 49, 839, 1029
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 2 cut(s) 14, 533
Fsp4HI GCNGC 3 cut(s) 49, 839, 1029
FspBI CTAG 6 cut(s) 186, 197, 420, 480, 519, 1044
GlaI GCGC 2 cut(s) 404, 772
GluI GCNGC 3 cut(s) 49, 839, 1029
GsaI CCCAGC 2 cut(s) 530, 543
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 5 cut(s) 184, 531, 652, 657, 970
HapII CCGG 4 cut(s) 654, 671, 862, 875
HgaI GACGC 3 cut(s) 320, 348, 420
HhaI GCGC 2 cut(s) 405, 773
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 8 cut(s) 175, 259, 290, 370, 754, 795, 831, 1062
Hin6I GCGC 2 cut(s) 403, 771
HinP1I GCGC 2 cut(s) 403, 771
HinfI GANTC 5 cut(s) 386, 579, 871, 899, 928
HpaII CCGG 4 cut(s) 654, 671, 862, 875
HphI GGTGA 2 cut(s) 94, 106
Hpy188I TCNGA 6 cut(s) 9, 124, 163, 895, 904, 933
Hpy188III TCNNGA 5 cut(s) 20, 353, 383, 868, 1044
Hpy99I CGWCG 3 cut(s) 342, 414, 890
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 3 cut(s) 94, 153, 700
HpyCH4IV ACGT 2 cut(s) 322, 574
HpyCH4V TGCA 6 cut(s) 84, 750, 795, 819, 841, 1074
HpyF3I CTNAG 4 cut(s) 8, 833, 956, 1053
HpySE526I ACGT 2 cut(s) 322, 574
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 8 cut(s) 175, 259, 290, 370, 754, 795, 831, 1062
HspAI GCGC 2 cut(s) 403, 771
KflI GGGWCCC 1 cut(s) 445
Kzo9I GATC 4 cut(s) 99, 190, 214, 511
LguI GCTCTTC 1 cut(s) 624
Lsp1109I GCAGC 3 cut(s) 60, 825, 1015
MaeI CTAG 6 cut(s) 186, 197, 420, 480, 519, 1044
MaeII ACGT 2 cut(s) 322, 574
MalI GATC 4 cut(s) 101, 192, 216, 513
MboI GATC 4 cut(s) 99, 190, 214, 511
MboII GAAGA 3 cut(s) 372, 641, 1002
MflI RGATCY 2 cut(s) 190, 511
MhlI GDGCHC 3 cut(s) 14, 469, 533
MlsI TGGCCA 1 cut(s) 970
MluCI AATT 2 cut(s) 439, 993
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 4 cut(s) 395, 588, 908, 937
MmeI TCCRAC 3 cut(s) 873, 882, 926
Mox20I TGGCCA 1 cut(s) 970
MscI TGGCCA 1 cut(s) 970
MseI TTAA 1 cut(s) 762
Msp20I TGGCCA 1 cut(s) 970
MspI CCGG 4 cut(s) 654, 671, 862, 875
MspR9I CCNGG 3 cut(s) 328, 654, 863
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 21
NciI CCSGG 2 cut(s) 654, 863
NcoI CCATGG 3 cut(s) 286, 827, 1058
NdeII GATC 4 cut(s) 99, 190, 214, 511
NlaIII CATG 8 cut(s) 175, 259, 290, 370, 754, 795, 831, 1062
NlaIV GGNNCC 5 cut(s) 446, 447, 513, 531, 532
NruI TCGCGA 1 cut(s) 21
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 911
PceI AGGCCT 1 cut(s) 184
PciI ACATGT 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PfeI GAWTC 1 cut(s) 871
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 3 cut(s) 50, 840, 1030
PleI GAGTC 4 cut(s) 394, 587, 907, 936
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 4 cut(s) 394, 587, 907, 936
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 445
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 326
PspCI CACGTG 1 cut(s) 575
PspFI CCCAGC 2 cut(s) 526, 539
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 5 cut(s) 446, 447, 513, 531, 532
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 5 cut(s) 445, 529, 530, 651, 656
PspPPI RGGWCCY 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 816
PsuI RGATCY 2 cut(s) 190, 511
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 2 cut(s) 246, 669
RsaNI GTAC 2 cut(s) 245, 668
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 3 cut(s) 49, 839, 1029
Sau3AI GATC 4 cut(s) 99, 190, 214, 511
Sau96I GGNCC 5 cut(s) 445, 529, 530, 651, 656
ScaI AGTACT 1 cut(s) 246
SchI GAGTC 4 cut(s) 395, 588, 908, 937
ScrFI CCNGG 3 cut(s) 328, 654, 863
SduI GDGCHC 3 cut(s) 14, 469, 533
SfuI TTCGAA 1 cut(s) 911
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 2 cut(s) 381, 940
SmoI CTYRAG 2 cut(s) 381, 940
Sse9I AATT 2 cut(s) 439, 993
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 659
SspMI CTAG 6 cut(s) 186, 197, 420, 480, 519, 1044
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 3 cut(s) 326, 652, 861
StyI CCWWGG 5 cut(s) 286, 479, 616, 827, 1058
TaaI ACNGT 3 cut(s) 94, 153, 700
TaiI ACGT 2 cut(s) 325, 577
TasI AATT 2 cut(s) 439, 993
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 1 cut(s) 871
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 2 cut(s) 573, 705
TseI GCWGC 3 cut(s) 48, 838, 1028
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 573, 705
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 1 cut(s) 993
XbaI TCTAGA 1 cut(s) 1043
XceI RCATGY 1 cut(s) 175
XmaJI CCTAGG 1 cut(s) 479
XspI CTAG 6 cut(s) 186, 197, 420, 480, 519, 1044
ZrmI AGTACT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.