Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8384927.1

Orthogroup ID

OG0012221

Physical Location & Seq

Genomic Coordinates Reverse (-)

514 .. 1187

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8384927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 674 bp

cccgacgttcccgcccaagcaggcgtagaagaaaccgtagcttcgatgatgacatagagcgcggggacccgacccacccggaactcggtacccgaaaccgacccgggacgtggatcatagtacgacccatcgacgacgatccgattcaaccctttcgcagatcaagagataatcaaaacctcgttttaccgataccacatggagtggatccgggaaactactttgtcgggtcggggctcatggggctcatcgaggagctgacccaaaatgaccgacccggaccggctcccttacccgaaccggcaatcaactcaatcccaaccgttaagattagcgaggcccatttgagcaacgacccgaattgtcctatttgcatggaggagtttaaggtggggggagaggcgagagagctgccatgcaagcatatataccacaatgaatgcattgtgccgtggctgaggcttcacaattcttgcccggtttgccgggttgagattccgatttcgactgacgaggagtcggagggttcgaacagcggtggagggaggagggggcggcggggcatgaggtggagtcggctcgggtctttgtggccgtttcggaggagatatcgccggattccggttcagggcggaaatgatgatgatcatggtgacacttcgagagttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

223

Amino Acids

25.3

Weight (kDa)

8.64

Isoelectric Point (pI)

81.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60360
fragaria_vesca	FvH4_2g26580 FvH4_2g26580
malus_domestica	MD08G1166600.v1.1 MD15G1352600.v1.1
prunus_persica	Prupe.1G501100_v2.0.a1
pyrus_communis	pycom08g14250
rosa_chinensis	RchiOBHm_Chr6g0295451
rosa_laevigata	RLG00000011800
rosa_multiflora	Rmu_co8384927.1_g000001 Rmu_sc0016348.1_g000002 Rmu_sc0019562.1_g000002
rosa_rugosa	Rorug06G0250900 Rorug06G0251000
rosa_samantha	Rh6AG364200 Rh6BG372500 Rh6CG378800 Rh6DG365200
rosa_wichuraiana	Rw6G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	88
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	12, 62, 536, 555, 558, 632
AclWI	GGATC	4 cut(s)	121, 133, 202, 215
AcoI	YGGCCR	1 cut(s)	592
AfaI	GTAC	2 cut(s)	90, 122
AfiI	CCNNNNNNNGG	4 cut(s)	85, 110, 621, 628
AgsI	TTSAA	1 cut(s)	148
AhdI	GACNNNNNGTC	1 cut(s)	516
AjiI	CACGTC	1 cut(s)	110
AluBI	AGCT	3 cut(s)	41, 258, 411
AluI	AGCT	3 cut(s)	41, 258, 411
AlwI	GGATC	4 cut(s)	121, 133, 202, 215
Ama87I	CYCGRG	2 cut(s)	103, 580
AoxI	GGCC	2 cut(s)	338, 592
ApeKI	GCWGC	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	66, 280, 339
AsuC2I	CCSGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
AsuHPI	GGTGA	1 cut(s)	664
AsuII	TTCGAA	1 cut(s)	529
AvaI	CYCGRG	2 cut(s)	103, 580
AvaII	GGWCC	2 cut(s)	66, 280
BamHI	GGATCC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	239, 248
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	2 cut(s)	435, 579
BcgI	CGANNNNNNTGC	2 cut(s)	393, 427
BclI	TGATCA	1 cut(s)	645
BcnI	CCSGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
BisI	GCNGC	2 cut(s)	412, 556
BlsI	GCNGC	2 cut(s)	413, 557
Bme1390I	CCNGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
Bme18I	GGWCC	2 cut(s)	66, 280
BmeRI	GACNNNNNGTC	1 cut(s)	516
BmeT110I	CYCGRG	2 cut(s)	103, 580
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	66, 280, 339
BmiI	GGNNCC	5 cut(s)	67, 68, 90, 209, 287
BmrFI	CCNGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu14I	TTCGAA	1 cut(s)	529
BpuMI	CCSGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
BsaBI	GATNNNNATC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	103, 451
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 110, 621, 628
Bse118I	RCCGGY	2 cut(s)	282, 300
Bse8I	GATNNNNATC	1 cut(s)	644
BseDI	CCNNGG	2 cut(s)	103, 451
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	4 cut(s)	85, 110, 621, 628
BseMII	CTCAG	1 cut(s)	448
BseRI	GAGGAG	5 cut(s)	268, 394, 529, 561, 618
BseXI	GCAGC	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	340, 594
BshNI	GGYRCC	1 cut(s)	88
BsiHKCI	CYCGRG	2 cut(s)	103, 580
BslFI	GGGAC	2 cut(s)	79, 120
BslI	CCNNNNNNNGG	4 cut(s)	85, 110, 621, 628
BsmFI	GGGAC	2 cut(s)	79, 120
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	340, 594
BsoBI	CYCGRG	2 cut(s)	103, 580
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	239, 248
Bsp143I	GATC	5 cut(s)	113, 138, 160, 207, 645
BspACI	CCGC	6 cut(s)	12, 62, 536, 555, 558, 632
BspANI	GGCC	2 cut(s)	340, 594
BspCNI	CTCAG	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	5 cut(s)	67, 68, 90, 209, 287
BspPI	GGATC	4 cut(s)	121, 133, 202, 215
BspT104I	TTCGAA	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	88
BsrFI	RCCGGY	2 cut(s)	282, 300
BssAI	RCCGGY	2 cut(s)	282, 300
BssECI	CCNNGG	2 cut(s)	103, 451
BssMI	GATC	5 cut(s)	113, 138, 160, 207, 645
Bst4CI	ACNGT	2 cut(s)	37, 324
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	22, 421
BstDEI	CTNAG	1 cut(s)	457
BstDSI	CCRYGG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	5 cut(s)	116, 141, 163, 210, 648
BstMBI	GATC	5 cut(s)	113, 138, 160, 207, 645
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 420, 482
BstSCI	CCNGG	7 cut(s)	77, 102, 103, 210, 276, 476, 485
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	340, 594
BtgI	CCRYGG	1 cut(s)	451
BtrI	CACGTC	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	22, 421
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	282, 300
Cfr13I	GGNCC	3 cut(s)	66, 280, 339
Cfr9I	CCCGGG	1 cut(s)	103
CpoI	CGGWCCG	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	89, 121
CspI	CGGWCCG	1 cut(s)	280
CviAII	CATG	6 cut(s)	199, 240, 375, 416, 564, 649
CviQI	GTAC	2 cut(s)	89, 121
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	5 cut(s)	115, 140, 162, 209, 647
DpnII	GATC	5 cut(s)	113, 138, 160, 207, 645
DriI	GACNNNNNGTC	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	592
Eam1105I	GACNNNNNGTC	1 cut(s)	516
EciI	GGCGGA	1 cut(s)	647
Eco24I	GRGCYC	2 cut(s)	239, 248
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	66, 280
Eco88I	CYCGRG	2 cut(s)	103, 580
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	239, 248
FaeI	CATG	6 cut(s)	202, 243, 378, 419, 567, 652
FaqI	GGGAC	2 cut(s)	79, 120
FatI	CATG	6 cut(s)	198, 239, 374, 415, 563, 648
FauI	CCCGC	3 cut(s)	19, 55, 551
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	2 cut(s)	412, 556
FriOI	GRGCYC	2 cut(s)	239, 248
Fsp4HI	GCNGC	2 cut(s)	412, 556
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	412, 556
HaeIII	GGCC	2 cut(s)	340, 594
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	6 cut(s)	202, 243, 378, 419, 567, 652
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	5 cut(s)	144, 495, 517, 573, 618
HphI	GGTGA	1 cut(s)	664
Hpy188I	TCNGA	4 cut(s)	143, 500, 522, 602
Hpy188III	TCNNGA	2 cut(s)	164, 662
Hpy99I	CGWCG	3 cut(s)	8, 136, 139
HpyCH4III	ACNGT	2 cut(s)	37, 324
HpyCH4IV	ACGT	2 cut(s)	6, 109
HpyCH4V	TGCA	3 cut(s)	374, 419, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 420, 482
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	2 cut(s)	6, 109
Hsp92II	CATG	6 cut(s)	202, 243, 378, 419, 567, 652
HspAI	GCGC	1 cut(s)	60
KflI	GGGWCCC	1 cut(s)	66
KpnI	GGTACC	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	5 cut(s)	113, 138, 160, 207, 645
LmnI	GCTCC	2 cut(s)	255, 291
Lsp1109I	GCAGC	1 cut(s)	398
MaeII	ACGT	2 cut(s)	6, 109
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	5 cut(s)	115, 140, 162, 209, 647
MboI	GATC	5 cut(s)	113, 138, 160, 207, 645
MboII	GAAGA	1 cut(s)	41
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	239, 248
MluCI	AATT	2 cut(s)	360, 468
MlyI	GAGTC	2 cut(s)	526, 582
MmeI	TCCRAC	1 cut(s)	500
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	2 cut(s)	326, 386
MspA1I	CMGCKG	1 cut(s)	536
MspR9I	CCNGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	243, 420, 482
NciI	CCSGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
NdeII	GATC	5 cut(s)	113, 138, 160, 207, 645
NlaIII	CATG	6 cut(s)	202, 243, 378, 419, 567, 652
NlaIV	GGNNCC	5 cut(s)	67, 68, 90, 209, 287
NmuCI	GTSAC	1 cut(s)	652
NsiI	ATGCAT	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	144, 495, 618
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	413, 557
PleI	GAGTC	2 cut(s)	525, 581
PpsI	GAGTC	2 cut(s)	525, 581
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
PspN4I	GGNNCC	5 cut(s)	67, 68, 90, 209, 287
PspPI	GGNCC	3 cut(s)	66, 280, 339
PspPPI	RGGWCCY	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	2 cut(s)	90, 122
RsaNI	GTAC	2 cut(s)	89, 121
Rsr2I	CGGWCCG	1 cut(s)	280
RsrII	CGGWCCG	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	326, 386
SatI	GCNGC	2 cut(s)	412, 556
Sau3AI	GATC	5 cut(s)	113, 138, 160, 207, 645
Sau96I	GGNCC	3 cut(s)	66, 280, 339
SchI	GAGTC	2 cut(s)	526, 582
ScrFI	CCNGG	7 cut(s)	79, 104, 105, 212, 278, 478, 487
SduI	GDGCHC	2 cut(s)	239, 248
SetI	ASST	8 cut(s)	9, 43, 112, 182, 260, 392, 413, 571
SfuI	TTCGAA	1 cut(s)	529
SinI	GGWCC	2 cut(s)	66, 280
SmaI	CCCGGG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	360, 468
SsiI	CCGC	6 cut(s)	12, 62, 536, 555, 558, 632
StyD4I	CCNGG	7 cut(s)	77, 102, 103, 210, 276, 476, 485
TaaI	ACNGT	2 cut(s)	37, 324
TaiI	ACGT	2 cut(s)	9, 112
TaqI	TCGA	6 cut(s)	44, 131, 251, 505, 529, 661
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	360, 468
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	3 cut(s)	144, 495, 618
Tru1I	TTAA	2 cut(s)	326, 386
Tru9I	TTAA	2 cut(s)	326, 386
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	1 cut(s)	452
TspMI	CCCGGG	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	66, 280
XmaI	CCCGGG	1 cut(s)	103
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.