Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012221

Physical Location & Seq

Genomic Coordinates Forward (+)

39667157 .. 39669531

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0250900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGAGAGCCGTCTCCAAGTTCAAATACAAAGCATGGCCTCCACTTTCACTCTCACGTCGTTGCTCTCACATGGCCACTGTCACAGAATCACCGACTCTGGTCGAACAGTTCACCCAATTCTGCTACCAGAGAGACCTCCCCAGAGCCATGACGGCCATGGAAGCTATGCAAAGACGTGGACTTTGGGCTGACTCCGTCGTCTACTCGGAGCTCATCAAGTGCTGCCTAGCTCGTCGCGCCGTTCAACAAGGCAAGCTCGTCCACAAGCACGTTTTCTCAAATGGGCACCACCCCCAAACCTTTTTGATCAACATCTTCATAAACATGTATGTCAAATTTTCTCTATTGGATGAAGCAGAGCAACTGTTCGACAAAATGCCTGAGAGGAATGTGATTTCCTGGACGACTATGATTTCAGCTTATTGTCATGCCAAGATGAACAGCAAGGCCTTGGAGTCTTTGGTTTTGATGCTTAGAGAGGGTGTGTGGCCGAATAGCTTCACATACTCTTCGGTTTTGAGGGCTTGCGAGGGGTTAGGGAATCTCAAGCAGCTGCATTGTTGTATTGTTAAAGTGGGGTTAGAGTCTGATGTGTTTGTTCGGAGTGCTCTGATTGATGTCTACTCGAAATTGGGTGACTTGCATAATGCGCTAGGCGTTTTCAATGAGATGGTGACTGGGGATTCGGTTGTTTGGAGCTCTATCATTGGAGCTTTTGCGCAGAACAGTGATGGCGATGAAGCTCTGGATCTTTTCAAGAGGATGAAGAGAGCAGGTTTTAAAGCTGAAGAGGCGACGTTGACGAGTGTCTTGAGAGCCTGTACAGCGTTGGCGCTTTTGGAATTGGGGAGACAAGTCCATGTTCATGCACTGAAGTATGGTCCGGATTTAATTCTAAACAATGCGCTTCTGGATATGTATTGCAAGTGTGGCAGTTTGGAAGATGCGGACGCTGTTTTTACGAGGATGGTGGAGAAGGATGTAATCTCTTGGAGCACCATGATTGCAGGGTTGGCACAAAATGGTTTCAGCCAAGAGGCACTGAAGTTGTTCGAGGAGATGAAGGTTTCGGGGACAAAACCAAACTACATCACAGTTCTTGGGGTTCTGTTTGCTTGTAGTCATGCGGGGCTTTTAGAAGAGGGGTGGTACTACTTCCAGAATATGAAGCAGCTCTTCGGGATTGATCCTGGAAGAGAGCACTATGGCTGTGTTATTGATCTTCTTGGAAGGGCTGGGAAGCTTGACGAGGCAGCAAGGTTGATTCAAGAAATGCAATGTGAACCAGATGCAGTGACATGGAGGACTTTGCTCGGCGCATGCAGGGTTCATCGGAATGTTGATCTAGCAACACATGCTGCCAAACAAATTCTGAGAATGGACCCTGATGATGCTGGAACCTACATATTATTATCCAATCTATATGCAATTTCTCAGAGATGGGATGATGTTGCAGAAGTTAGGAAGAGTATGAGAGCCAGAGGAATCACCAAAGAACCAGGGTGTAGTTGGATTGAAGTGAACAAACAGATCCATGCGTTTATTATGGGAGATGACTCGCATCCACAAATAGAAGAGATCAATAAGGAGCTAAGCTTCTTGATTGATAGACTCATGGGAATAGGTTATGTTCCAGATACGAACTTTGTTTTGCAAGATCTTGAGGGAGAACAGAGGGAGGCTTCTCTTCTATCGCACAGTGAAAGATTGGCCATTGTATTTGGTATAATGAACTTGCCTAAGGGAATGACTGTTAGGGTCAGGAAAAACCTCAGGATCTGTGGAGACTGTCATGTATTTGCAAAACTTGTAGCAAAGTTGGAGCAGAGAACTATTGTGATAAGAGATCCCATTCGGTACCACCATTTTCAAGATGGAGTATGTTCCTGTGGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zinc_ribbon_9

Protein Analysis

634

Amino Acids

71.59

Weight (kDa)

6.85

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	129 - 176	7.6e-11	PPR repeat family
PPR_2	PF13041	228 - 274	4.1e-08	PPR repeat family
PPR	PF01535	230 - 260	2.4e-07	PPR repeat
PPR_1	PF12854	324 - 355	6.1e-06	PPR repeat
PPR_2	PF13041	326 - 367	3.4e-09	PPR repeat family
PPR	PF01535	329 - 358	2.8e-08	PPR repeat
E_motif	PF20431	444 - 506	4.8e-22	E motif
DYW_deaminase	PF14432	542 - 634	2e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60360
fragaria_vesca	FvH4_2g26580 FvH4_2g26580
malus_domestica	MD08G1166600.v1.1 MD15G1352600.v1.1
prunus_persica	Prupe.1G501100_v2.0.a1
pyrus_communis	pycom08g14250
rosa_chinensis	RchiOBHm_Chr6g0295451
rosa_laevigata	RLG00000011800
rosa_multiflora	Rmu_co8384927.1_g000001 Rmu_sc0016348.1_g000002 Rmu_sc0019562.1_g000002
rosa_rugosa	Rorug06G0250900 Rorug06G0251000
rosa_samantha	Rh6AG364200 Rh6BG372500 Rh6CG378800 Rh6DG365200
rosa_wichuraiana	Rw6G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc16I	TGCGCA	1 cut(s)	720
Acc36I	ACCTGC	1 cut(s)	764
Acc65I	GGTACC	1 cut(s)	1857
AccB1I	GGYRCC	2 cut(s)	285, 1857
AccI	GTMKAC	2 cut(s)	201, 621
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	2 cut(s)	947, 1127
AclWI	GGATC	5 cut(s)	756, 1181, 1525, 1784, 1841
AcoI	YGGCCR	4 cut(s)	72, 153, 488, 1710
AcsI	RAATTY	2 cut(s)	335, 1368
AcuI	CTGAAG	3 cut(s)	807, 893, 1064
AfaI	GTAC	3 cut(s)	823, 1151, 1859
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	7 cut(s)	22, 245, 664, 757, 1268, 1517, 1871
AjiI	CACGTC	2 cut(s)	56, 176
AjnI	CCWGG	3 cut(s)	398, 1189, 1498
Alw21I	GWGCWC	5 cut(s)	213, 610, 701, 998, 1203
Alw26I	GTCTC	4 cut(s)	16, 126, 844, 1779
AlwI	GGATC	5 cut(s)	756, 1181, 1525, 1784, 1841
AlwNI	CAGNNNCTG	1 cut(s)	1779
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	6 cut(s)	35, 72, 153, 447, 488, 1710
ApeKI	GCWGC	6 cut(s)	222, 550, 553, 1171, 1253, 1358
ApoI	RAATTY	2 cut(s)	335, 1368
ArsI	GACNNNNNNTTYG	4 cut(s)	165, 197, 667, 699
Asp700I	GAANNNNTTC	2 cut(s)	497, 1049
Asp718I	GGTACC	1 cut(s)	1857
AspLEI	GCGC	6 cut(s)	239, 652, 721, 835, 907, 1319
AspS9I	GGNCC	2 cut(s)	881, 1381
AsuHPI	GGTGA	5 cut(s)	81, 103, 647, 685, 1480
AvaII	GGWCC	2 cut(s)	881, 1381
AxyI	CCTNAGG	2 cut(s)	1740, 1772
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	2 cut(s)	74, 1712
BanI	GGYRCC	2 cut(s)	285, 1857
BanII	GRGCYC	2 cut(s)	213, 701
Bbv12I	GWGCWC	5 cut(s)	213, 610, 701, 998, 1203
BbvI	GCAGC	6 cut(s)	209, 540, 562, 1183, 1265, 1345
BccI	CCATC	5 cut(s)	664, 725, 961, 1434, 1868
BceAI	ACGGC	2 cut(s)	168, 224
BciT130I	CCWGG	3 cut(s)	400, 1191, 1500
BclI	TGATCA	1 cut(s)	306
BcoDI	GTCTC	4 cut(s)	16, 126, 844, 1779
BfaI	CTAG	3 cut(s)	227, 653, 1346
BfoI	RGCGCY	1 cut(s)	836
BfuAI	ACCTGC	1 cut(s)	764
BglI	GCCNNNNNGGC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	1657
BisI	GCNGC	6 cut(s)	223, 551, 554, 1172, 1254, 1359
BlpI	GCTNAGC	1 cut(s)	1592
BlsI	GCNGC	6 cut(s)	224, 552, 555, 1173, 1255, 1360
Bme1390I	CCNGG	3 cut(s)	400, 1191, 1500
Bme18I	GGWCC	2 cut(s)	881, 1381
BmgBI	CACGTC	2 cut(s)	56, 176
BmgT120I	GGNCC	2 cut(s)	881, 1381
BmiI	GGNNCC	4 cut(s)	287, 1383, 1399, 1859
BmrFI	CCNGG	3 cut(s)	400, 1191, 1500
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	5 cut(s)	459, 934, 1279, 1381, 1570
BmuI	ACTGGG	1 cut(s)	687
BoxI	GACNNNNGTC	2 cut(s)	98, 806
Bpu1102I	GCTNAGC	1 cut(s)	1592
BpuEI	CTTGAG	3 cut(s)	530, 832, 1682
BsaBI	GATNNNNATC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	156, 450, 1499
BsaWI	WCCGGW	1 cut(s)	883
Bse1I	ACTGG	1 cut(s)	682
Bse21I	CCTNAGG	2 cut(s)	1740, 1772
Bse3DI	GCAATG	1 cut(s)	1283
Bse8I	GATNNNNATC	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	3 cut(s)	400, 1191, 1500
BseDI	CCNNGG	3 cut(s)	156, 450, 1499
BseGI	GGATG	6 cut(s)	355, 768, 972, 985, 1450, 1561
BseJI	GATNNNNATC	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	1283
BseMII	CTCAG	4 cut(s)	372, 1364, 1448, 1786
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	1 cut(s)	1070
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	6 cut(s)	209, 540, 562, 1183, 1265, 1345
BseYI	CCCAGC	1 cut(s)	1235
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	6 cut(s)	37, 74, 155, 449, 490, 1712
BshNI	GGYRCC	2 cut(s)	285, 1857
BsiHKAI	GWGCWC	5 cut(s)	213, 610, 701, 998, 1203
BsiSI	CCGG	1 cut(s)	884
BslFI	GGGAC	1 cut(s)	1087
BsmAI	GTCTC	4 cut(s)	16, 126, 844, 1779
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	1087
BsnI	GGCC	6 cut(s)	37, 74, 155, 449, 490, 1712
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	6 cut(s)	213, 288, 610, 701, 998, 1203
Bsp13I	TCCGGA	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	821
Bsp1720I	GCTNAGC	1 cut(s)	1592
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	2 cut(s)	947, 1127
BspANI	GGCC	6 cut(s)	37, 74, 155, 449, 490, 1712
BspCNI	CTCAG	4 cut(s)	373, 1365, 1447, 1785
BspEI	TCCGGA	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	287, 1383, 1399, 1859
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	5 cut(s)	756, 1181, 1525, 1784, 1841
BspQI	GCTCTTC	1 cut(s)	1181
BspT107I	GGYRCC	2 cut(s)	285, 1857
BspTNI	GGTCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	1283
BsrGI	TGTACA	1 cut(s)	821
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	3 cut(s)	156, 450, 1499
BssT1I	CCWWGG	2 cut(s)	156, 450
Bst2UI	CCWGG	3 cut(s)	400, 1191, 1500
Bst4CI	ACNGT	8 cut(s)	79, 108, 366, 728, 1096, 1700, 1753, 1790
Bst6I	CTCTTC	9 cut(s)	514, 761, 783, 1134, 1181, 1189, 1460, 1569, 1692
BstAPI	GCANNNNNTGC	1 cut(s)	1355
BstAUI	TGTACA	1 cut(s)	821
BstC8I	GCNNGC	3 cut(s)	254, 526, 1321
BstDEI	CTNAG	7 cut(s)	381, 473, 1373, 1434, 1592, 1740, 1772
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	6 cut(s)	355, 768, 972, 985, 1450, 1561
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	836
BstHHI	GCGC	6 cut(s)	239, 652, 721, 835, 907, 1319
BstMAI	GTCTC	4 cut(s)	16, 126, 844, 1779
BstMWI	GCNNNNNNNGC	9 cut(s)	152, 161, 236, 649, 791, 824, 930, 1013, 1355
BstNI	CCWGG	3 cut(s)	400, 1191, 1500
BstNSI	RCATGY	3 cut(s)	328, 1323, 1358
BstPAI	GACNNNNGTC	2 cut(s)	98, 806
BstSCI	CCNGG	3 cut(s)	398, 1189, 1498
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	6 cut(s)	209, 540, 562, 1183, 1265, 1345
BstX2I	RGATCY	5 cut(s)	748, 1530, 1657, 1776, 1846
BstYI	RGATCY	5 cut(s)	748, 1530, 1657, 1776, 1846
Bsu36I	CCTNAGG	2 cut(s)	1740, 1772
BsuRI	GGCC	6 cut(s)	37, 74, 155, 449, 490, 1712
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	750
BtrI	CACGTC	2 cut(s)	56, 176
BtsCI	GGATG	6 cut(s)	355, 768, 972, 985, 1450, 1561
BtsI	GCAGTG	1 cut(s)	1299
BtsIMutI	CAGTG	6 cut(s)	75, 733, 869, 1040, 1299, 1705
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	3 cut(s)	254, 526, 1321
CaiI	CAGNNNCTG	1 cut(s)	1779
CfoI	GCGC	6 cut(s)	239, 652, 721, 835, 907, 1319
Cfr13I	GGNCC	2 cut(s)	881, 1381
CseI	GACGC	1 cut(s)	959
Csp6I	GTAC	3 cut(s)	822, 1150, 1858
CviQI	GTAC	3 cut(s)	822, 1150, 1858
DdeI	CTNAG	7 cut(s)	381, 473, 1373, 1434, 1592, 1740, 1772
DraI	TTTAAA	1 cut(s)	781
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	4 cut(s)	72, 153, 488, 1710
Eam1104I	CTCTTC	9 cut(s)	514, 761, 783, 1134, 1181, 1189, 1460, 1569, 1692
EarI	CTCTTC	9 cut(s)	514, 761, 783, 1134, 1181, 1189, 1460, 1569, 1692
Ecl136II	GAGCTC	2 cut(s)	211, 699
Eco130I	CCWWGG	2 cut(s)	156, 450
Eco147I	AGGCCT	1 cut(s)	449
Eco24I	GRGCYC	2 cut(s)	213, 701
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	881, 1381
Eco53kI	GAGCTC	2 cut(s)	211, 699
Eco57I	CTGAAG	3 cut(s)	807, 893, 1064
Eco81I	CCTNAGG	2 cut(s)	1740, 1772
EcoICRI	GAGCTC	2 cut(s)	211, 699
EcoRII	CCWGG	3 cut(s)	398, 1189, 1498
EcoT14I	CCWWGG	2 cut(s)	156, 450
EcoT38I	GRGCYC	2 cut(s)	213, 701
ErhI	CCWWGG	2 cut(s)	156, 450
Esp3I	CGTCTC	1 cut(s)	16
FalI	AAGNNNNNCTT	2 cut(s)	1160, 1192
FaqI	GGGAC	1 cut(s)	1087
FauI	CCCGC	1 cut(s)	1120
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	2 cut(s)	201, 621
Fnu4HI	GCNGC	6 cut(s)	223, 551, 554, 1172, 1254, 1359
FokI	GGATG	6 cut(s)	362, 775, 979, 992, 1457, 1548
FriOI	GRGCYC	2 cut(s)	213, 701
Fsp4HI	GCNGC	6 cut(s)	223, 551, 554, 1172, 1254, 1359
FspBI	CTAG	3 cut(s)	227, 653, 1346
FspI	TGCGCA	1 cut(s)	720
GlaI	GCGC	6 cut(s)	238, 651, 720, 834, 906, 1318
GluI	GCNGC	6 cut(s)	223, 551, 554, 1172, 1254, 1359
GsaI	CCCAGC	1 cut(s)	1239
HaeII	RGCGCY	1 cut(s)	836
HaeIII	GGCC	6 cut(s)	37, 74, 155, 449, 490, 1712
HapII	CCGG	1 cut(s)	884
HgaI	GACGC	1 cut(s)	959
HhaI	GCGC	6 cut(s)	239, 652, 721, 835, 907, 1319
Hin6I	GCGC	6 cut(s)	237, 650, 719, 833, 905, 1317
HinP1I	GCGC	6 cut(s)	237, 650, 719, 833, 905, 1317
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	2 cut(s)	1241, 1594
HpaII	CCGG	1 cut(s)	884
HphI	GGTGA	5 cut(s)	81, 103, 647, 685, 1480
Hpy166II	GTNNAC	8 cut(s)	111, 179, 202, 262, 622, 801, 1283, 1522
Hpy188I	TCNGA	7 cut(s)	208, 589, 603, 612, 1335, 1374, 1437
Hpy8I	GTNNAC	8 cut(s)	111, 179, 202, 262, 622, 801, 1283, 1522
Hpy99I	CGWCG	4 cut(s)	60, 200, 237, 799
HpyAV	CCTTC	3 cut(s)	970, 1057, 1224
HpyCH4III	ACNGT	8 cut(s)	79, 108, 366, 728, 1096, 1700, 1753, 1790
HpyCH4IV	ACGT	4 cut(s)	55, 175, 270, 797
HpyF10VI	GCNNNNNNNGC	9 cut(s)	152, 161, 236, 649, 791, 824, 930, 1013, 1355
HpyF3I	CTNAG	7 cut(s)	381, 473, 1373, 1434, 1592, 1740, 1772
HpySE526I	ACGT	4 cut(s)	55, 175, 270, 797
HspAI	GCGC	6 cut(s)	237, 650, 719, 833, 905, 1317
Kpn2I	TCCGGA	1 cut(s)	883
KpnI	GGTACC	1 cut(s)	1861
Ksp22I	TGATCA	1 cut(s)	306
LguI	GCTCTTC	1 cut(s)	1181
LmnI	GCTCC	6 cut(s)	208, 696, 710, 993, 1588, 1822
Lsp1109I	GCAGC	6 cut(s)	209, 540, 562, 1183, 1265, 1345
LweI	GCATC	5 cut(s)	459, 934, 1279, 1381, 1570
MaeI	CTAG	3 cut(s)	227, 653, 1346
MaeII	ACGT	4 cut(s)	55, 175, 270, 797
MaeIII	GTNAC	4 cut(s)	79, 635, 673, 1294
MflI	RGATCY	5 cut(s)	748, 1530, 1657, 1776, 1846
MhlI	GDGCHC	6 cut(s)	213, 288, 610, 701, 998, 1203
MlsI	TGGCCA	2 cut(s)	74, 1712
MluCI	AATT	7 cut(s)	116, 335, 629, 842, 891, 1368, 1428
MluNI	TGGCCA	2 cut(s)	74, 1712
MlyI	GAGTC	6 cut(s)	88, 185, 464, 593, 1550, 1605
MmeI	TCCRAC	2 cut(s)	1490, 1800
Mox20I	TGGCCA	2 cut(s)	74, 1712
MroI	TCCGGA	1 cut(s)	883
MroXI	GAANNNNTTC	2 cut(s)	497, 1049
MscI	TGGCCA	2 cut(s)	74, 1712
MseI	TTAA	3 cut(s)	570, 780, 890
MslI	CAYNNNNRTG	3 cut(s)	323, 864, 1335
Msp20I	TGGCCA	2 cut(s)	74, 1712
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	1 cut(s)	884
MspR9I	CCNGG	3 cut(s)	400, 1191, 1500
MvaI	CCWGG	3 cut(s)	400, 1191, 1500
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	9 cut(s)	152, 161, 236, 649, 791, 824, 930, 1013, 1355
NcoI	CCATGG	1 cut(s)	156
NlaIV	GGNNCC	4 cut(s)	287, 1383, 1399, 1859
NmeAIII	GCCGAG	1 cut(s)	1293
NmuCI	GTSAC	4 cut(s)	79, 635, 673, 1294
NsbI	TGCGCA	1 cut(s)	720
NspI	RCATGY	3 cut(s)	328, 1323, 1358
PaeI	GCATGC	1 cut(s)	1323
PceI	AGGCCT	1 cut(s)	449
PciI	ACATGT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	1181
PdmI	GAANNNNTTC	2 cut(s)	497, 1049
PfeI	GAWTC	5 cut(s)	86, 541, 683, 1264, 1485
PflFI	GACNNNGTC	1 cut(s)	194
PfoI	TCCNGGA	2 cut(s)	398, 1189
PkrI	GCNGC	6 cut(s)	224, 552, 555, 1173, 1255, 1360
PleI	GAGTC	6 cut(s)	88, 185, 463, 592, 1550, 1605
PpsI	GAGTC	6 cut(s)	88, 185, 463, 592, 1550, 1605
PscI	ACATGT	1 cut(s)	324
PshAI	GACNNNNGTC	2 cut(s)	98, 806
Psp124BI	GAGCTC	2 cut(s)	213, 701
Psp6I	CCWGG	3 cut(s)	398, 1189, 1498
PspFI	CCCAGC	1 cut(s)	1235
PspGI	CCWGG	3 cut(s)	398, 1189, 1498
PspN4I	GGNNCC	4 cut(s)	287, 1383, 1399, 1859
PspPI	GGNCC	2 cut(s)	881, 1381
PstNI	CAGNNNCTG	1 cut(s)	1779
PsuI	RGATCY	5 cut(s)	748, 1530, 1657, 1776, 1846
PsyI	GACNNNGTC	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	3 cut(s)	823, 1151, 1859
RsaNI	GTAC	3 cut(s)	822, 1150, 1858
RseI	CAYNNNNRTG	3 cut(s)	323, 864, 1335
SacI	GAGCTC	2 cut(s)	213, 701
SapI	GCTCTTC	1 cut(s)	1181
SaqAI	TTAA	3 cut(s)	570, 780, 890
SatI	GCNGC	6 cut(s)	223, 551, 554, 1172, 1254, 1359
Sau96I	GGNCC	2 cut(s)	881, 1381
SchI	GAGTC	6 cut(s)	88, 185, 464, 593, 1550, 1605
ScrFI	CCNGG	3 cut(s)	400, 1191, 1500
SduI	GDGCHC	6 cut(s)	213, 288, 610, 701, 998, 1203
SfaNI	GCATC	5 cut(s)	459, 934, 1279, 1381, 1570
SinI	GGWCC	2 cut(s)	881, 1381
SmiMI	CAYNNNNRTG	3 cut(s)	323, 864, 1335
SmlI	CTYRAG	3 cut(s)	545, 811, 1661
SmoI	CTYRAG	3 cut(s)	545, 811, 1661
SphI	GCATGC	1 cut(s)	1323
Sse9I	AATT	7 cut(s)	116, 335, 629, 842, 891, 1368, 1428
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	2 cut(s)	947, 1127
SspMI	CTAG	3 cut(s)	227, 653, 1346
SstI	GAGCTC	2 cut(s)	213, 701
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	3 cut(s)	398, 1189, 1498
StyI	CCWWGG	2 cut(s)	156, 450
TaaI	ACNGT	8 cut(s)	79, 108, 366, 728, 1096, 1700, 1753, 1790
TaiI	ACGT	4 cut(s)	58, 178, 273, 800
TaqI	TCGA	4 cut(s)	102, 369, 626, 1053
TasI	AATT	7 cut(s)	116, 335, 629, 842, 891, 1368, 1428
TatI	WGTACW	1 cut(s)	821
TfiI	GAWTC	5 cut(s)	86, 541, 683, 1264, 1485
Tru1I	TTAA	3 cut(s)	570, 780, 890
Tru9I	TTAA	3 cut(s)	570, 780, 890
TscAI	CASTG	6 cut(s)	82, 733, 876, 1047, 1299, 1705
TseFI	GTSAC	4 cut(s)	79, 635, 673, 1294
TseI	GCWGC	6 cut(s)	222, 550, 553, 1171, 1253, 1358
Tsp45I	GTSAC	4 cut(s)	79, 635, 673, 1294
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	6 cut(s)	82, 733, 876, 1047, 1299, 1705
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	881, 1381
XapI	RAATTY	2 cut(s)	335, 1368
XceI	RCATGY	3 cut(s)	328, 1323, 1358
XcmI	CCANNNNNNNNNTGG	3 cut(s)	154, 1506, 1871
XmiI	GTMKAC	2 cut(s)	201, 621
XmnI	GAANNNNTTC	2 cut(s)	497, 1049
XspI	CTAG	3 cut(s)	227, 653, 1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.