Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Reverse (-)

22324437 .. 22327359

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTACTCTGTCGCTTTAGTTCCTCTTACCGTTGGCGCTTCAGCGGCCTATTTAGAGACGGGTTTGTTCTTAGCTAGACGTTATGTTACTCTATTGCTCTCATCAATTCTTATCATTACTTGGCTCAACCTAAGCAATGATGTTTATGATTTTGATACCGGAGCTGATAAGAACAAAATGGAATCAGTAGTAAATCTGGTTGGAAGCCGGACAGGAACCTTAGCCGCTGCAATCACATCGCTAGCGCTTGGTGTTTCTGGTCTAGTTTGGACATCGTTAAATGCAAGTAATATCCGTGCAATACTATTGCTAGCCTCAGCAATACTCTGTGGCTACGTATACCAGTGTCCGCCATTTCGGTTAAGTTACCAAGGATTAGGAGAGCCTCTATGCTTTGCAGCATTTGGTCCATTTGCTACTACTGCTTTTTATCTACTTCTTGGTAGCTCAAGCGAGATGAGGCATCTTCCGCTAAGCGGTAGGGTCCTTTCATCATCTGTCCTTGTTGGTTTTACTACATCTCTTATCCTTTTCTGCAGCCACTTTCATCAGGTGGATGGAGATTTAGCTGTGGGGAAATATTCACCTCTGGTTCGGTTAGGGACTGAAAAAGGAGCTTTTGTTGTGAGATGGACTATTCGTTTACTATATTCAATGCTTCTTGTTCTTGGTTTAACCAGGATTTTGCCACTACCTTGCACCTTGATGTGCTTCCTGACATTACCAGTTGGGAATTTGGTTTCAAGCTACGTTGAAAAGCACCACAAGGATAATGGGAAGATATTCATGGCCAAGTATTACTGTGTGAGACTCCACGCCTTGCTTGGAGCCGCATTGTCGTTGGGGCTAGTTATCGCGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

287

Amino Acids

31.05

Weight (kDa)

9.18

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	6 - 262	1.1e-22	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	2 cut(s)	857, 859
AciI	CCGC	6 cut(s)	44, 225, 350, 470, 477, 831
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	654, 744, 755
AjnI	CCWGG	1 cut(s)	677
AluBI	AGCT	6 cut(s)	74, 164, 447, 569, 617, 747
AluI	AGCT	6 cut(s)	74, 164, 447, 569, 617, 747
Alw26I	GTCTC	2 cut(s)	50, 802
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	2 cut(s)	45, 789
ApeKI	GCWGC	3 cut(s)	227, 398, 537
ApoI	RAATTY	1 cut(s)	733
Asp700I	GAANNNNTTC	1 cut(s)	782
AspLEI	GCGC	4 cut(s)	38, 247, 859, 861
AspS9I	GGNCC	2 cut(s)	407, 484
AsuHPI	GGTGA	1 cut(s)	576
AsuNHI	GCTAGC	2 cut(s)	241, 310
AvaII	GGWCC	2 cut(s)	407, 484
BalI	TGGCCA	1 cut(s)	791
BbvCI	CCTCAGC	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	214, 410, 549
BccI	CCATC	2 cut(s)	551, 624
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	50, 802
BfaI	CTAG	6 cut(s)	75, 242, 263, 311, 848, 862
BfmI	CTRYAG	1 cut(s)	535
BfoI	RGCGCY	2 cut(s)	39, 248
BisI	GCNGC	6 cut(s)	45, 225, 228, 399, 538, 831
BlpI	GCTNAGC	1 cut(s)	473
BlsI	GCNGC	6 cut(s)	46, 226, 229, 400, 539, 832
Bme1390I	CCNGG	1 cut(s)	679
Bme18I	GGWCC	2 cut(s)	407, 484
BmgT120I	GGNCC	2 cut(s)	407, 484
BmiI	GGNNCC	3 cut(s)	217, 485, 829
BmrFI	CCNGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	472
BmtI	GCTAGC	2 cut(s)	245, 314
Bpu10I	CCTNAGC	3 cut(s)	131, 220, 316
Bpu1102I	GCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	343, 725
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	679
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	343, 725
BsePI	GCGCGC	1 cut(s)	857
BseXI	GCAGC	3 cut(s)	214, 410, 549
Bsh1236I	CGCG	2 cut(s)	857, 859
BshFI	GGCC	2 cut(s)	47, 791
BsiSI	CCGG	2 cut(s)	159, 208
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	50, 802
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	47, 791
Bsp1720I	GCTNAGC	1 cut(s)	473
BspACI	CCGC	6 cut(s)	44, 225, 350, 470, 477, 831
BspANI	GGCC	2 cut(s)	47, 791
BspCNI	CTCAG	1 cut(s)	329
BspFNI	CGCG	2 cut(s)	857, 859
BspLI	GGNNCC	3 cut(s)	217, 485, 829
BspMAI	CTGCAG	1 cut(s)	539
BspOI	GCTAGC	2 cut(s)	245, 314
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	343, 725
BssECI	CCNNGG	1 cut(s)	370
BssHII	GCGCGC	1 cut(s)	857
BssNAI	GTATAC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	370
Bst1107I	GTATAC	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	2 cut(s)	31, 803
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	243, 312, 859
BstDEI	CTNAG	5 cut(s)	70, 131, 220, 316, 473
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	2 cut(s)	857, 859
BstH2I	RGCGCY	2 cut(s)	39, 248
BstHHI	GCGC	4 cut(s)	38, 247, 859, 861
BstMAI	GTCTC	2 cut(s)	50, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 422, 469
BstNI	CCWGG	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	677
BstSFI	CTRYAG	1 cut(s)	535
BstSNI	TACGTA	1 cut(s)	337
BstUI	CGCG	2 cut(s)	857, 859
BstV1I	GCAGC	3 cut(s)	214, 410, 549
BstZ17I	GTATAC	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	47, 791
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	3 cut(s)	243, 312, 859
CfoI	GCGC	4 cut(s)	38, 247, 859, 861
Cfr13I	GGNCC	2 cut(s)	407, 484
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	787
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	70, 131, 220, 316, 473
EaeI	YGGCCR	1 cut(s)	789
EciI	GGCGGA	1 cut(s)	339
Eco105I	TACGTA	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	407, 484
Eco47III	AGCGCT	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	790
FaiI	YATR	6 cut(s)	84, 147, 340, 391, 649, 788
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	1 cut(s)	786
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	6 cut(s)	45, 225, 228, 399, 538, 831
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	6 cut(s)	45, 225, 228, 399, 538, 831
FspBI	CTAG	6 cut(s)	75, 242, 263, 311, 848, 862
GlaI	GCGC	4 cut(s)	37, 246, 858, 860
GluI	GCNGC	6 cut(s)	45, 225, 228, 399, 538, 831
HaeII	RGCGCY	2 cut(s)	39, 248
HaeIII	GGCC	2 cut(s)	47, 791
HapII	CCGG	2 cut(s)	159, 208
HhaI	GCGC	4 cut(s)	38, 247, 859, 861
Hin1II	CATG	1 cut(s)	790
Hin6I	GCGC	4 cut(s)	36, 245, 857, 859
HinP1I	GCGC	4 cut(s)	36, 245, 857, 859
HinfI	GANTC	2 cut(s)	182, 810
HpaII	CCGG	2 cut(s)	159, 208
HphI	GGTGA	1 cut(s)	576
Hpy166II	GTNNAC	2 cut(s)	340, 644
Hpy188III	TCNNGA	1 cut(s)	715
Hpy8I	GTNNAC	2 cut(s)	340, 644
HpyCH4III	ACNGT	2 cut(s)	31, 803
HpyCH4IV	ACGT	3 cut(s)	79, 336, 750
HpyCH4V	TGCA	6 cut(s)	230, 284, 299, 398, 537, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 422, 469
HpyF3I	CTNAG	5 cut(s)	70, 131, 220, 316, 473
HpySE526I	ACGT	3 cut(s)	79, 336, 750
Hsp92II	CATG	1 cut(s)	790
HspAI	GCGC	4 cut(s)	36, 245, 857, 859
LmnI	GCTCC	3 cut(s)	161, 614, 827
Lsp1109I	GCAGC	3 cut(s)	214, 410, 549
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	6 cut(s)	75, 242, 263, 311, 848, 862
MaeII	ACGT	3 cut(s)	79, 336, 750
MaeIII	GTNAC	2 cut(s)	85, 365
MboII	GAAGA	2 cut(s)	458, 790
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	2 cut(s)	105, 733
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	33, 325, 396, 453, 597
Mox20I	TGGCCA	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	3 cut(s)	278, 362, 674
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	2 cut(s)	44, 227
MspI	CCGG	2 cut(s)	159, 208
MspR9I	CCNGG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	679
MvnI	CGCG	2 cut(s)	857, 859
MwoI	GCNNNNNNNGC	3 cut(s)	44, 422, 469
NheI	GCTAGC	2 cut(s)	241, 310
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	3 cut(s)	217, 485, 829
PauI	GCGCGC	1 cut(s)	857
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	6 cut(s)	46, 226, 229, 400, 539, 832
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
Ppu21I	YACGTR	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	3 cut(s)	217, 485, 829
PspPI	GGNCC	2 cut(s)	407, 484
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	539
PteI	GCGCGC	1 cut(s)	857
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	3 cut(s)	278, 362, 674
SatI	GCNGC	6 cut(s)	45, 225, 228, 399, 538, 831
Sau96I	GGNCC	2 cut(s)	407, 484
SchI	GAGTC	1 cut(s)	804
ScrFI	CCNGG	1 cut(s)	679
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	535
SinI	GGWCC	2 cut(s)	407, 484
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SnaBI	TACGTA	1 cut(s)	337
Sse9I	AATT	2 cut(s)	105, 733
SsiI	CCGC	6 cut(s)	44, 225, 350, 470, 477, 831
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	6 cut(s)	75, 242, 263, 311, 848, 862
StyD4I	CCNGG	1 cut(s)	677
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	31, 803
TaiI	ACGT	3 cut(s)	82, 339, 753
TasI	AATT	2 cut(s)	105, 733
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	47, 227, 833
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	3 cut(s)	278, 362, 674
Tru9I	TTAA	3 cut(s)	278, 362, 674
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	3 cut(s)	227, 398, 537
TspDTI	ATGAA	3 cut(s)	480, 536, 775
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	407, 484
XapI	RAATTY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	2 cut(s)	770, 821
XmiI	GTMKAC	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	782
XspI	CTAG	6 cut(s)	75, 242, 263, 311, 848, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.