Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

60338729 .. 60343673

Gene Structure 4945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020034

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCAACAGCATTCTGTAATCTCAACCTATGCGGCTCTGGTCTCACAAAACTAAATGACTACAAGAAGCGCACAGTTCTCAAAAGGCCTTACATAGACTGCAAAAGATTGTCTCTTTCGCCTTGTAATCCCCAAAAGGTTTCCCCCAAGACTATTCGAAGAGAAGTTGAGGTCATGCATTGCACACAGGCTTTTGTCAATAGTAATGGTGCGGATTTGGGTACTATCCATGAGGAGGATAAAGAAGAGAGTATTTCTAAGGCGACCTTAATATGGAGGGCAATAAAGTTGCCAATATACTCTGTTGCATTCATACCTCTCACTGTAGGTAGTGCAGCTGCTTATTTAGAGACGGGCATATTTTCATCATGGCGTTATTCTATTCTTTTGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGCAATGATGTTTATGATTTCGATACAGGAGCCGATAAAAACAAGGTAGAATCGGTTGTAAATCTAGTTGGCAGCCGTACAGGCACAATTGTTGCTGCCTACTCGCTACTTGTGCTTGGCTTCATGGGGCTTACTTGGGTATCTTTTGAGGCAGGAAATATGCGGGCAATATTGTTACTCGCTTGTGCAATAATTTTTGGTTATATATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGATTGGGGGAGCCATTGTGCTTTGCAGCATTTGGTCCATTTGCCACTACAGCTTTTTATTTACTGCAGGGCAGCGGAAGTAAAATGATGCATCTTCCTTTCACTGTTCCAATTCTTTCTGCATCACTTCTTGTTGGCATTACGACAACCTTAATTCTGTTCTGTAGTCACTTTCATCAGATTGAAGAAGACAAGGCGGTAGCAAAAATTTCCCCTCTGGTTAGGCTTGGCACCAAAAGAGGATCATGGGTAGTGAGATTGGCAATAATAGGACTGTATGTCCTAGCTTTTTCTTTTGGTCTAAGCAGGGCTCTTCCCATTACTTGTATATTTTTCTGTGCCTTGACCTTACCAGTGGCAAGACTGGTGGTTAGCTATGTTCAGGAAAACCATAATGATAAACATAAAATATTCATGGCGAAGTATTACTGTGTGAGATTGCATTCTTTATTTGGAGTTGCACTCACTGCTGGACTAGTGGTAGCGAGAACGGCCCCTAAAATTAGTATTCCAAGGTTGGCATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

399

Amino Acids

43.82

Weight (kDa)

9.31

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	104 - 362	2.5e-25	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	670
AciI	CCGC	5 cut(s)	33, 212, 589, 741, 863
AclWI	GGATC	1 cut(s)	916
AcsI	RAATTY	1 cut(s)	873
AfaI	GTAC	2 cut(s)	223, 505
AfiI	CCNNNNNNNGG	3 cut(s)	235, 273, 670
AflII	CTTAAG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	851
AhdI	GACNNNNNGTC	1 cut(s)	944
AhlI	ACTAGT	1 cut(s)	1141
AluBI	AGCT	4 cut(s)	338, 719, 953, 1041
AluI	AGCT	4 cut(s)	338, 719, 953, 1041
Alw26I	GTCTC	3 cut(s)	47, 117, 344
AlwI	GGATC	1 cut(s)	916
AoxI	GGCC	2 cut(s)	86, 1158
ApeKI	GCWGC	6 cut(s)	335, 338, 498, 521, 692, 738
ApoI	RAATTY	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	701, 1159
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanI	GGYRCC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	979
BbsI	GAAGAC	1 cut(s)	861
BbvI	GCAGC	6 cut(s)	325, 347, 508, 510, 704, 750
BceAI	ACGGC	2 cut(s)	486, 1173
BcoDI	GTCTC	3 cut(s)	47, 117, 344
BcuI	ACTAGT	1 cut(s)	1141
BfaI	CTAG	3 cut(s)	491, 950, 1142
BfmI	CTRYAG	4 cut(s)	324, 714, 731, 829
BfrI	CTTAAG	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	7 cut(s)	34, 336, 339, 499, 522, 693, 739
BlsI	GCNGC	7 cut(s)	35, 337, 340, 500, 523, 694, 740
Bme18I	GGWCC	1 cut(s)	701
BmeRI	GACNNNNNGTC	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	701, 1159
BmiI	GGNNCC	4 cut(s)	457, 678, 898, 1161
BmsI	GCATC	3 cut(s)	744, 766, 797
BpiI	GAAGAC	1 cut(s)	861
BplI	GAGNNNNNCTC	2 cut(s)	1113, 1145
Bpu14I	TTCGAA	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	664, 1178
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 273, 670
Bse1I	ACTGG	2 cut(s)	1019, 1035
Bse3DI	GCAATG	2 cut(s)	178, 436
BseDI	CCNNGG	2 cut(s)	664, 1178
BseLI	CCNNNNNNNGG	3 cut(s)	235, 273, 670
BseMI	GCAATG	2 cut(s)	178, 436
BseNI	ACTGG	2 cut(s)	1019, 1035
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	6 cut(s)	325, 347, 508, 510, 704, 750
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	88, 1160
BshNI	GGYRCC	1 cut(s)	896
BslI	CCNNNNNNNGG	3 cut(s)	235, 273, 670
BsmAI	GTCTC	3 cut(s)	47, 117, 344
BsmBI	CGTCTC	1 cut(s)	344
BsmI	GAATGC	3 cut(s)	11, 308, 1108
BsnI	GGCC	2 cut(s)	88, 1160
Bso31I	GGTCTC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	644, 979
Bsp143I	GATC	1 cut(s)	908
BspACI	CCGC	5 cut(s)	33, 212, 589, 741, 863
BspANI	GGCC	2 cut(s)	88, 1160
BspLI	GGNNCC	4 cut(s)	457, 678, 898, 1161
BspMAI	CTGCAG	1 cut(s)	735
BspPI	GGATC	1 cut(s)	916
BspQI	GCTCTTC	1 cut(s)	984
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	896
BspTI	CTTAAG	1 cut(s)	424
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	178, 436
BsrI	ACTGG	2 cut(s)	1019, 1035
BssECI	CCNNGG	2 cut(s)	664, 1178
BssMI	GATC	1 cut(s)	908
BssT1I	CCWWGG	2 cut(s)	664, 1178
Bst4CI	ACNGT	5 cut(s)	76, 325, 772, 942, 1097
Bst6I	CTCTTC	3 cut(s)	154, 240, 984
BstAFI	CTTAAG	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	1133
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	2 cut(s)	258, 968
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	911
BstMAI	GTCTC	3 cut(s)	47, 117, 344
BstMBI	GATC	1 cut(s)	908
BstMWI	GCNNNNNNNGC	5 cut(s)	507, 538, 716, 1133, 1157
BstSFI	CTRYAG	4 cut(s)	324, 714, 731, 829
BstSLI	GKGCMC	1 cut(s)	644
BstV1I	GCAGC	6 cut(s)	325, 347, 508, 510, 704, 750
BstV2I	GAAGAC	1 cut(s)	861
BsuRI	GGCC	2 cut(s)	88, 1160
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	5 cut(s)	321, 644, 768, 1026, 1131
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	701, 1159
Csp6I	GTAC	2 cut(s)	222, 504
CspCI	CAANNNNNGTGG	2 cut(s)	1014, 1049
CviAII	CATG	7 cut(s)	175, 230, 369, 414, 550, 912, 1081
CviQI	GTAC	2 cut(s)	222, 504
DdeI	CTNAG	2 cut(s)	258, 968
DpnI	GATC	1 cut(s)	910
DpnII	GATC	1 cut(s)	908
DriI	GACNNNNNGTC	1 cut(s)	944
Eam1104I	CTCTTC	3 cut(s)	154, 240, 984
Eam1105I	GACNNNNNGTC	1 cut(s)	944
EarI	CTCTTC	3 cut(s)	154, 240, 984
Eco130I	CCWWGG	2 cut(s)	664, 1178
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	979
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	664, 1178
EcoT22I	ATGCAT	2 cut(s)	180, 759
EcoT38I	GRGCYC	1 cut(s)	979
ErhI	CCWWGG	2 cut(s)	664, 1178
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	7 cut(s)	178, 233, 372, 417, 553, 915, 1084
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	7 cut(s)	174, 229, 368, 413, 549, 911, 1080
FauI	CCCGC	1 cut(s)	582
Fnu4HI	GCNGC	7 cut(s)	34, 336, 339, 499, 522, 693, 739
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	7 cut(s)	34, 336, 339, 499, 522, 693, 739
FspBI	CTAG	3 cut(s)	491, 950, 1142
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	7 cut(s)	34, 336, 339, 499, 522, 693, 739
HaeIII	GGCC	2 cut(s)	88, 1160
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	7 cut(s)	178, 233, 372, 417, 553, 915, 1084
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	476
Hpy188I	TCNGA	1 cut(s)	846
Hpy188III	TCNNGA	1 cut(s)	1049
HpyCH4III	ACNGT	5 cut(s)	76, 325, 772, 942, 1097
HpyF10VI	GCNNNNNNNGC	5 cut(s)	507, 538, 716, 1133, 1157
HpyF3I	CTNAG	2 cut(s)	258, 968
Hsp92II	CATG	7 cut(s)	178, 233, 372, 417, 553, 915, 1084
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	908
LguI	GCTCTTC	1 cut(s)	984
LmnI	GCTCC	2 cut(s)	455, 676
Lsp1109I	GCAGC	6 cut(s)	325, 347, 508, 510, 704, 750
LweI	GCATC	3 cut(s)	744, 766, 797
MaeI	CTAG	3 cut(s)	491, 950, 1142
MaeIII	GTNAC	3 cut(s)	600, 659, 833
MalI	GATC	1 cut(s)	910
MboI	GATC	1 cut(s)	908
MboII	GAAGA	7 cut(s)	171, 257, 387, 752, 863, 866, 971
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	644, 979
MluCI	AATT	6 cut(s)	513, 618, 777, 819, 873, 1167
MnlI	CCTC	8 cut(s)	163, 226, 229, 270, 327, 568, 891, 899
Mph1103I	ATGCAT	2 cut(s)	180, 759
MseI	TTAA	4 cut(s)	269, 425, 656, 818
MspA1I	CMGCKG	2 cut(s)	338, 741
MspCI	CTTAAG	1 cut(s)	424
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	3 cut(s)	11, 308, 1108
MwoI	GCNNNNNNNGC	5 cut(s)	507, 538, 716, 1133, 1157
NdeII	GATC	1 cut(s)	908
NlaIII	CATG	7 cut(s)	178, 233, 372, 417, 553, 915, 1084
NlaIV	GGNNCC	4 cut(s)	457, 678, 898, 1161
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	2 cut(s)	180, 759
NspV	TTCGAA	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	984
PctI	GAATGC	3 cut(s)	11, 308, 1108
PfeI	GAWTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	670
PkrI	GCNGC	7 cut(s)	35, 337, 340, 500, 523, 694, 740
PspN4I	GGNNCC	4 cut(s)	457, 678, 898, 1161
PspPI	GGNCC	2 cut(s)	701, 1159
PstI	CTGCAG	1 cut(s)	735
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	223, 505
RsaNI	GTAC	2 cut(s)	222, 504
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	4 cut(s)	269, 425, 656, 818
SatI	GCNGC	7 cut(s)	34, 336, 339, 499, 522, 693, 739
Sau3AI	GATC	1 cut(s)	908
Sau96I	GGNCC	2 cut(s)	701, 1159
SduI	GDGCHC	2 cut(s)	644, 979
SfaNI	GCATC	3 cut(s)	744, 766, 797
SfcI	CTRYAG	4 cut(s)	324, 714, 731, 829
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SpeI	ACTAGT	1 cut(s)	1141
Sse9I	AATT	6 cut(s)	513, 618, 777, 819, 873, 1167
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	5 cut(s)	33, 212, 589, 741, 863
SspI	AATATT	2 cut(s)	597, 1077
SspMI	CTAG	3 cut(s)	491, 950, 1142
StuI	AGGCCT	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	664, 1178
TaaI	ACNGT	5 cut(s)	76, 325, 772, 942, 1097
TaqI	TCGA	2 cut(s)	157, 447
TasI	AATT	6 cut(s)	513, 618, 777, 819, 873, 1167
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	4 cut(s)	269, 425, 656, 818
Tru9I	TTAA	4 cut(s)	269, 425, 656, 818
TscAI	CASTG	5 cut(s)	328, 644, 775, 1026, 1138
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	6 cut(s)	335, 338, 498, 521, 692, 738
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	6 cut(s)	301, 354, 538, 830, 1069, 1182
TspRI	CASTG	5 cut(s)	328, 644, 775, 1026, 1138
Van91I	CCANNNNNTGG	1 cut(s)	670
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	1 cut(s)	873
XspI	CTAG	3 cut(s)	491, 950, 1142
Zsp2I	ATGCAT	2 cut(s)	180, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.