Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

6965532 .. 6969148

Gene Structure 3617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1052500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATCAGGTTCATGGCAACAACATTCTGTTATCTTCCCACGGGGTCTGGTCTCACAAAACTGAATGACTACCGTGTCTCCAAAAGACCTTATCGACGCTTCGAAACGTTGTCTTGTTTCTCCTGTAATCCTCAAAAAGTTTTCCCTAGAAGAGAGGTAGAGGTCAGGCGGCAGTGGCAACATTGTGGACAGGCTTTTGTCAACAATAAGTCAGACTACTATTCTAACACCACCATCCACCAAGAAGAGGATAAGGAAGCGGATATTTCTAAAGCAACCTTGACATGGAGGGCGATCAAGTTACCAATATACTCCGTTGCTTTGATTCCTCTCACGGTAGGTAGCGCAGCTGCTTATTTGCAGACAGGCATGTTTTCAGCTCAACGTTATTCTATTCTTTTGATTTCCTCGGTTCTTATCATCACATGGCTCAACTTAAGCAACGATGTATACGATTTCGATACAGGAGCAGACATAAATAAGAAAGAATCAGTTGTAAATCTGGTGGGCAGCCGTACAGGCACTCTTGTTTCTGCATACTTGCTGCTTGCTCTTGGCTTCTTGGGGCTTGCTTGGGTATCTGTTAAGGCAGGAAGTATGCGTGCAATATTATTACTCGGCTGTGCAGTCACTTGTGGTTATATATATCAGTGTCCACCATTTCGGTTAAGTTACAAGGGATTGGGAGAGCCGTTGTGTTTTGCAGCATTTGGTCCATTCGCTACTACCGGGTTTTATTTATTGCAGGGCAGCACAAGGGAAGTGATCCATCTTCCTTTCACCGGTTCAATTCTCTCCCTATCACTCCTTGTTGGCATTACAACGGCCTTGATCCTCTTCTGTAGTCACTTTCATCAGGTTAGGCTTGGCACCGAAAGAGGATCAGGGGTAGTGAAATGGGCAGTAACAGGACTATATGTTCTTACTTTCACTTTCGGTCTGAGCAGCGCTCTTCCTTTTACTTGTATCTTTCTCTGCTGCTTGACCTTACCAATTGCAAGACTGGTGGTTAGCTATGTTGAAGAAAACCACAATGACAAGCAGAAGATATTCATGGCGAAGTACTACTGTGTGAGACTGCATTCTTTGTTTGGAACTGCATTGGCTGCTGGACTCGTTGTGTCGAGAATGTTCCCTAAACTTAGCCTTTCCTCAACGTTTGGATTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

391

Amino Acids

43.24

Weight (kDa)

9.28

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	108 - 353	2.2e-15	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	2 cut(s)	169, 260
AclI	AACGTT	3 cut(s)	107, 385, 1157
AclWI	GGATC	3 cut(s)	760, 826, 889
AfaI	GTAC	2 cut(s)	517, 1064
AfeI	AGCGCT	1 cut(s)	949
AfiI	CCNNNNNNNGG	3 cut(s)	247, 285, 782
AflII	CTTAAG	1 cut(s)	436
AgeI	ACCGGT	1 cut(s)	782
AgsI	TTSAA	2 cut(s)	789, 1022
AloI	GAACNNNNNNTCC	2 cut(s)	903, 935
AluBI	AGCT	3 cut(s)	350, 380, 1014
AluI	AGCT	3 cut(s)	350, 380, 1014
Alw26I	GTCTC	3 cut(s)	56, 82, 1069
AlwI	GGATC	3 cut(s)	760, 826, 889
Aor51HI	AGCGCT	1 cut(s)	949
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	9 cut(s)	347, 350, 510, 544, 704, 750, 945, 978, 1106
AsiGI	ACCGGT	1 cut(s)	782
Asp700I	GAANNNNTTC	1 cut(s)	1049
AspLEI	GCGC	2 cut(s)	347, 950
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	1 cut(s)	772
AsuII	TTCGAA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	869
BbvI	GCAGC	9 cut(s)	337, 359, 522, 531, 716, 762, 957, 965, 1093
BccI	CCATC	2 cut(s)	242, 777
BceAI	ACGGC	3 cut(s)	498, 676, 840
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	3 cut(s)	56, 82, 1069
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	841
BfoI	RGCGCY	1 cut(s)	951
BfrI	CTTAAG	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	1064
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	1 cut(s)	871
BmrFI	CCNGG	1 cut(s)	730
BplI	GAGNNNNNCTC	2 cut(s)	934, 966
Bpu14I	TTCGAA	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	39, 408
BsaWI	WCCGGW	1 cut(s)	782
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 285, 782
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	1 cut(s)	1008
BseDI	CCNNGG	2 cut(s)	39, 408
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	247, 285, 782
BseMII	CTCAG	1 cut(s)	932
BseNI	ACTGG	1 cut(s)	1008
BseXI	GCAGC	9 cut(s)	337, 359, 522, 531, 716, 762, 957, 965, 1093
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	827
BshNI	GGYRCC	1 cut(s)	869
BshTI	ACCGGT	1 cut(s)	782
BsiSI	CCGG	2 cut(s)	729, 783
BslI	CCNNNNNNNGG	3 cut(s)	247, 285, 782
BsmAI	GTCTC	3 cut(s)	56, 82, 1069
BsmI	GAATGC	1 cut(s)	1081
BsnI	GGCC	1 cut(s)	827
Bso31I	GGTCTC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	102
Bsp143I	GATC	5 cut(s)	3, 294, 765, 831, 881
BspACI	CCGC	2 cut(s)	169, 260
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	1 cut(s)	933
BspHI	TCATGA	1 cut(s)	1169
BspLI	GGNNCC	1 cut(s)	871
BspPI	GGATC	3 cut(s)	760, 826, 889
BspQI	GCTCTTC	1 cut(s)	957
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	869
BspTI	CTTAAG	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	1008
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	2 cut(s)	39, 408
BssMI	GATC	5 cut(s)	3, 294, 765, 831, 881
BssNAI	GTATAC	1 cut(s)	451
Bst1107I	GTATAC	1 cut(s)	451
Bst4CI	ACNGT	3 cut(s)	74, 337, 1070
Bst6I	CTCTTC	4 cut(s)	145, 240, 842, 957
BstAFI	CTTAAG	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	549, 570, 603
BstDEI	CTNAG	2 cut(s)	941, 1142
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	951
BstHHI	GCGC	2 cut(s)	347, 950
BstKTI	GATC	5 cut(s)	6, 297, 768, 834, 884
BstMAI	GTCTC	3 cut(s)	56, 82, 1069
BstMBI	GATC	5 cut(s)	3, 294, 765, 831, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 519, 1106
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	728
BstSFI	CTRYAG	1 cut(s)	841
BstV1I	GCAGC	9 cut(s)	337, 359, 522, 531, 716, 762, 957, 965, 1093
BstZ17I	GTATAC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	179, 656
Cac8I	GCNNGC	3 cut(s)	549, 570, 603
CciI	TCATGA	1 cut(s)	1169
CfoI	GCGC	2 cut(s)	347, 950
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	1 cut(s)	713
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	516, 1063
CspAI	ACCGGT	1 cut(s)	782
CspCI	CAANNNNNGTGG	2 cut(s)	987, 1022
CviAII	CATG	6 cut(s)	13, 285, 370, 426, 1054, 1170
CviQI	GTAC	2 cut(s)	516, 1063
DdeI	CTNAG	2 cut(s)	941, 1142
DpnI	GATC	5 cut(s)	5, 296, 767, 833, 883
DpnII	GATC	5 cut(s)	3, 294, 765, 831, 881
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	4 cut(s)	145, 240, 842, 957
EarI	CTCTTC	4 cut(s)	145, 240, 842, 957
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	713
Eco47III	AGCGCT	1 cut(s)	949
FaeI	CATG	6 cut(s)	16, 288, 373, 429, 1057, 1173
FatI	CATG	6 cut(s)	12, 284, 369, 425, 1053, 1169
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	450
FokI	GGATG	1 cut(s)	221
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	346, 949
HaeII	RGCGCY	1 cut(s)	951
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	2 cut(s)	729, 783
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	2 cut(s)	347, 950
Hin1II	CATG	6 cut(s)	16, 288, 373, 429, 1057, 1173
Hin6I	GCGC	2 cut(s)	345, 948
HinP1I	GCGC	2 cut(s)	345, 948
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	325, 488, 1113
HpaII	CCGG	2 cut(s)	729, 783
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	4 cut(s)	188, 202, 451, 656
Hpy188I	TCNGA	2 cut(s)	214, 942
Hpy188III	TCNNGA	2 cut(s)	1125, 1170
Hpy8I	GTNNAC	4 cut(s)	188, 202, 451, 656
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	3 cut(s)	74, 337, 1070
HpyCH4IV	ACGT	3 cut(s)	107, 385, 1157
HpyCH4V	TGCA	9 cut(s)	361, 536, 605, 626, 704, 745, 998, 1081, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 519, 1106
HpyF3I	CTNAG	2 cut(s)	941, 1142
HpySE526I	ACGT	3 cut(s)	107, 385, 1157
Hsp92II	CATG	6 cut(s)	16, 288, 373, 429, 1057, 1173
HspAI	GCGC	2 cut(s)	345, 948
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 294, 765, 831, 881
LguI	GCTCTTC	1 cut(s)	957
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	9 cut(s)	337, 359, 522, 531, 716, 762, 957, 965, 1093
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	3 cut(s)	107, 385, 1157
MaeIII	GTNAC	5 cut(s)	300, 628, 671, 845, 904
MalI	GATC	5 cut(s)	5, 296, 767, 833, 883
MboI	GATC	5 cut(s)	3, 294, 765, 831, 881
MboII	GAAGA	8 cut(s)	26, 162, 257, 764, 829, 944, 1034, 1057
MfeI	CAATTG	1 cut(s)	993
MluCI	AATT	2 cut(s)	789, 993
MlyI	GAGTC	1 cut(s)	1107
MroXI	GAANNNNTTC	1 cut(s)	1049
MseI	TTAA	3 cut(s)	437, 585, 668
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	436
MspI	CCGG	2 cut(s)	729, 783
MspR9I	CCNGG	1 cut(s)	730
MunI	CAATTG	1 cut(s)	993
Mva1269I	GAATGC	1 cut(s)	1081
MwoI	GCNNNNNNNGC	3 cut(s)	175, 519, 1106
NciI	CCSGG	1 cut(s)	730
NdeII	GATC	5 cut(s)	3, 294, 765, 831, 881
NlaIII	CATG	6 cut(s)	16, 288, 373, 429, 1057, 1173
NlaIV	GGNNCC	1 cut(s)	871
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	628, 845
NspI	RCATGY	1 cut(s)	373
NspV	TTCGAA	1 cut(s)	102
PagI	TCATGA	1 cut(s)	1169
PciSI	GCTCTTC	1 cut(s)	957
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	1081
PdmI	GAANNNNTTC	1 cut(s)	1049
PfeI	GAWTC	2 cut(s)	325, 488
PinAI	ACCGGT	1 cut(s)	782
PleI	GAGTC	1 cut(s)	1107
PpsI	GAGTC	1 cut(s)	1107
Psp1406I	AACGTT	3 cut(s)	107, 385, 1157
PspN4I	GGNNCC	1 cut(s)	871
PspPI	GGNCC	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	517, 1064
RsaNI	GTAC	2 cut(s)	516, 1063
SapI	GCTCTTC	1 cut(s)	957
SaqAI	TTAA	3 cut(s)	437, 585, 668
Sau3AI	GATC	5 cut(s)	3, 294, 765, 831, 881
Sau96I	GGNCC	1 cut(s)	713
ScaI	AGTACT	1 cut(s)	1064
SchI	GAGTC	1 cut(s)	1107
ScrFI	CCNGG	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	841
SfuI	TTCGAA	1 cut(s)	102
SinI	GGWCC	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	2 cut(s)	789, 993
SsiI	CCGC	2 cut(s)	169, 260
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	728
TaaI	ACNGT	3 cut(s)	74, 337, 1070
TaiI	ACGT	3 cut(s)	110, 388, 1160
TaqI	TCGA	4 cut(s)	94, 102, 459, 1124
TaqII	GACCGA	1 cut(s)	926
TasI	AATT	2 cut(s)	789, 993
TatI	WGTACW	1 cut(s)	1062
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	325, 488
Tru1I	TTAA	3 cut(s)	437, 585, 668
Tru9I	TTAA	3 cut(s)	437, 585, 668
TscAI	CASTG	2 cut(s)	179, 656
TseFI	GTSAC	2 cut(s)	628, 845
TseI	GCWGC	9 cut(s)	347, 350, 510, 544, 704, 750, 945, 978, 1106
Tsp45I	GTSAC	2 cut(s)	628, 845
TspDTI	ATGAA	2 cut(s)	842, 1042
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	179, 656
Vha464I	CTTAAG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	713
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	1049
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.