Rh2BG442000

1,4-dihydroxy-2-naphthoate polyprenyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015495
Physical Location & Seq
Forward (+)
62603854 .. 62609394
5541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG442000.1

Sequence Viewer

Length: 1029 bp
ATGGCAACGGCATTCTGTAATCTCAACCTGTGCGGCTCTGGTCTCACAAAACTAAATGACTACAAGAAGCACACAGTCCTCAAAAGGCCTTACATAGACCGCAAAAGATTGTCTCTTTCGCCTTGTAATGCCGAAAAGGTTTTCCCCAAGACTCTTAGAAGAGAAGTTGAGGTCATGCACTGCACACAGGCTTTTGTCAACAGTAATGGTGCGGATTTGGGTACCATCCATGGGGAGGATAAAGAAGAGAGTATTTCTAAGGCGACCTTAATATGGAGGGCAATAAAGTTGCCAATATACTCTGTTGCATTCATACCTCTCACTGTAGGTAGTGCAGCTGCTTATTTAGAGACGGGCATATTTTCATCATGGCGTTATTCTATTCTTTTGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGCAATGATGTTTATGATTTTGATACAGGAGCAGATAAAAACAAGGTAGAATCGGTTGTAAATCTGGTTGGCAGCCGTACAGGCACAATTGTTGCTGCCTACTCGCTACTTGTGCTTGGCTTCATGGGGCTTACTTGGGTATCTTTTGAGGCAGGAAATGTGCGGGCAATATTATTACTCGCTTGTGCAATAATTTTTGGTTATATATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGATTGGGGGAGCCATTGTGCTTTGCAGCATTTGGTCCATTTGCCACTACAGCTTTTTATTTACTGCAGGGCAGCGGAAGTAAAATGATGCATCTTCCTTTCACTGGTCCAATTCTTTCTGCATCACTTCTTGTTGGCATTACGACAACCTTAATTCTGTTCTGTAGTCACTTTCATCAGATTGAAGAAGACAAGGCGGTAGCAAAAATTTCCCCTCTGGTTAGGCTTGGCACCAAAAGAGGATCATGGGTAGTGAGATTGGCAATTATAGGACTGTATGTCCTAGCGTTTTCTTTTGGTCTAAGCAGGGCTCTTCCCATTACTTGTATTGTGAGTTACACTTTTCGTGGTCTATGCTTCTAA

Protein Analysis

342

Amino Acids

37.55

Weight (kDa)

9.11

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 104 - 330 5.3e-22 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60600 AT1G60600
fragaria_vesca FvH4_6g33511
malus_domestica MD10G1052500.v1.1
prunus_persica Prupe.8G064500_v2.0.a1
pyrus_communis pycom10g03740
rosa_chinensis RchiOBHm_Chr2g0143381
rosa_laevigata RLG00000020034
rosa_multiflora Rmu_sc0003507.1_g000020
rosa_roxburghii Rroxscaffold_2G00101860
rosa_rugosa Rorug02G0381200
rosa_samantha Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana Rw2G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 221
AccB1I GGYRCC 2 cut(s) 221, 896
AccB7I CCANNNNNTGG 1 cut(s) 670
AciI CCGC 6 cut(s) 33, 100, 212, 589, 741, 863
AclWI GGATC 1 cut(s) 916
AcsI RAATTY 1 cut(s) 873
AfaI GTAC 2 cut(s) 223, 505
AfiI CCNNNNNNNGG 5 cut(s) 231, 235, 273, 670, 770
AflII CTTAAG 1 cut(s) 424
AgsI TTSAA 1 cut(s) 851
AhdI GACNNNNNGTC 1 cut(s) 944
AluBI AGCT 2 cut(s) 338, 719
AluI AGCT 2 cut(s) 338, 719
Alw26I GTCTC 3 cut(s) 47, 117, 344
AlwI GGATC 1 cut(s) 916
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 6 cut(s) 335, 338, 498, 521, 692, 738
ApoI RAATTY 1 cut(s) 873
Asp718I GGTACC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 701, 773
AvaII GGWCC 2 cut(s) 701, 773
BaeGI GKGCMC 1 cut(s) 644
BaeI ACNNNNGTAYC 2 cut(s) 549, 582
BanI GGYRCC 2 cut(s) 221, 896
BanII GRGCYC 1 cut(s) 979
BbsI GAAGAC 1 cut(s) 861
BbvI GCAGC 6 cut(s) 325, 347, 508, 510, 704, 750
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 24, 486
BcoDI GTCTC 3 cut(s) 47, 117, 344
BfaI CTAG 1 cut(s) 950
BfmI CTRYAG 4 cut(s) 324, 714, 731, 829
BfrI CTTAAG 1 cut(s) 424
BglI GCCNNNNNGGC 1 cut(s) 507
BisI GCNGC 7 cut(s) 34, 336, 339, 499, 522, 693, 739
BlsI GCNGC 7 cut(s) 35, 337, 340, 500, 523, 694, 740
Bme18I GGWCC 2 cut(s) 701, 773
BmeRI GACNNNNNGTC 1 cut(s) 944
BmgT120I GGNCC 2 cut(s) 701, 773
BmiI GGNNCC 3 cut(s) 223, 678, 898
BmsI GCATC 3 cut(s) 744, 766, 797
BpiI GAAGAC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 229, 664
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 5 cut(s) 231, 235, 273, 670, 770
Bse1I ACTGG 1 cut(s) 775
Bse3DI GCAATG 1 cut(s) 436
BseDI CCNNGG 2 cut(s) 229, 664
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 5 cut(s) 231, 235, 273, 670, 770
BseMI GCAATG 1 cut(s) 436
BseNI ACTGG 1 cut(s) 775
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 6 cut(s) 325, 347, 508, 510, 704, 750
BsgI GTGCAG 2 cut(s) 166, 354
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 2 cut(s) 221, 896
BslI CCNNNNNNNGG 5 cut(s) 231, 235, 273, 670, 770
BsmAI GTCTC 3 cut(s) 47, 117, 344
BsmBI CGTCTC 1 cut(s) 344
BsmI GAATGC 2 cut(s) 11, 308
BsnI GGCC 1 cut(s) 88
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 644, 979
Bsp143I GATC 1 cut(s) 908
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 6 cut(s) 33, 100, 212, 589, 741, 863
BspANI GGCC 1 cut(s) 88
BspLI GGNNCC 3 cut(s) 223, 678, 898
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 1 cut(s) 916
BspQI GCTCTTC 1 cut(s) 984
BspT107I GGYRCC 2 cut(s) 221, 896
BspTI CTTAAG 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 1 cut(s) 775
BssECI CCNNGG 2 cut(s) 229, 664
BssMI GATC 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 229, 664
Bst4CI ACNGT 4 cut(s) 76, 203, 325, 942
Bst6I CTCTTC 3 cut(s) 154, 240, 984
BstAFI CTTAAG 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 3 cut(s) 155, 258, 968
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 1 cut(s) 911
BstMAI GTCTC 3 cut(s) 47, 117, 344
BstMBI GATC 1 cut(s) 908
BstMWI GCNNNNNNNGC 3 cut(s) 507, 538, 716
BstSFI CTRYAG 4 cut(s) 324, 714, 731, 829
BstSLI GKGCMC 1 cut(s) 644
BstV1I GCAGC 6 cut(s) 325, 347, 508, 510, 704, 750
BstV2I GAAGAC 1 cut(s) 861
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 4 cut(s) 178, 321, 644, 768
Cac8I GCNNGC 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 701, 773
Csp6I GTAC 2 cut(s) 222, 504
CviAII CATG 6 cut(s) 175, 230, 369, 414, 550, 912
CviQI GTAC 2 cut(s) 222, 504
DdeI CTNAG 3 cut(s) 155, 258, 968
DpnI GATC 1 cut(s) 910
DpnII GATC 1 cut(s) 908
DriI GACNNNNNGTC 1 cut(s) 944
Eam1104I CTCTTC 3 cut(s) 154, 240, 984
Eam1105I GACNNNNNGTC 1 cut(s) 944
EarI CTCTTC 3 cut(s) 154, 240, 984
Eco130I CCWWGG 2 cut(s) 229, 664
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 979
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 701, 773
EcoT14I CCWWGG 2 cut(s) 229, 664
EcoT22I ATGCAT 1 cut(s) 759
EcoT38I GRGCYC 1 cut(s) 979
ErhI CCWWGG 2 cut(s) 229, 664
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 6 cut(s) 178, 233, 372, 417, 553, 915
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 6 cut(s) 174, 229, 368, 413, 549, 911
FauI CCCGC 1 cut(s) 582
Fnu4HI GCNGC 7 cut(s) 34, 336, 339, 499, 522, 693, 739
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 979
Fsp4HI GCNGC 7 cut(s) 34, 336, 339, 499, 522, 693, 739
FspBI CTAG 1 cut(s) 950
GluI GCNGC 7 cut(s) 34, 336, 339, 499, 522, 693, 739
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 6 cut(s) 178, 233, 372, 417, 553, 915
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 151, 476
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 846
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4III ACNGT 4 cut(s) 76, 203, 325, 942
HpyCH4V TGCA 9 cut(s) 178, 183, 308, 335, 614, 692, 733, 757, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 507, 538, 716
HpyF3I CTNAG 3 cut(s) 155, 258, 968
Hsp92II CATG 6 cut(s) 178, 233, 372, 417, 553, 915
KpnI GGTACC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 908
LguI GCTCTTC 1 cut(s) 984
LmnI GCTCC 2 cut(s) 455, 676
Lsp1109I GCAGC 6 cut(s) 325, 347, 508, 510, 704, 750
LweI GCATC 3 cut(s) 744, 766, 797
MaeI CTAG 1 cut(s) 950
MaeIII GTNAC 3 cut(s) 659, 833, 1001
MalI GATC 1 cut(s) 910
MboI GATC 1 cut(s) 908
MboII GAAGA 7 cut(s) 171, 257, 387, 752, 863, 866, 971
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 2 cut(s) 644, 979
MluCI AATT 6 cut(s) 513, 618, 777, 819, 873, 930
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 8 cut(s) 89, 163, 229, 270, 327, 568, 891, 899
Mph1103I ATGCAT 1 cut(s) 759
MseI TTAA 4 cut(s) 269, 425, 656, 818
MspA1I CMGCKG 2 cut(s) 338, 741
MspCI CTTAAG 1 cut(s) 424
MunI CAATTG 1 cut(s) 513
Mva1269I GAATGC 2 cut(s) 11, 308
MwoI GCNNNNNNNGC 3 cut(s) 507, 538, 716
NcoI CCATGG 1 cut(s) 229
NdeII GATC 1 cut(s) 908
NlaIII CATG 6 cut(s) 178, 233, 372, 417, 553, 915
NlaIV GGNNCC 3 cut(s) 223, 678, 898
NmuCI GTSAC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 759
PceI AGGCCT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 984
PctI GAATGC 2 cut(s) 11, 308
PfeI GAWTC 1 cut(s) 476
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 7 cut(s) 35, 337, 340, 500, 523, 694, 740
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 223, 678, 898
PspPI GGNCC 2 cut(s) 701, 773
PstI CTGCAG 1 cut(s) 735
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 223, 505
RsaNI GTAC 2 cut(s) 222, 504
SapI GCTCTTC 1 cut(s) 984
SaqAI TTAA 4 cut(s) 269, 425, 656, 818
SatI GCNGC 7 cut(s) 34, 336, 339, 499, 522, 693, 739
Sau3AI GATC 1 cut(s) 908
Sau96I GGNCC 2 cut(s) 701, 773
SchI GAGTC 1 cut(s) 145
SduI GDGCHC 2 cut(s) 644, 979
SfaNI GCATC 3 cut(s) 744, 766, 797
SfcI CTRYAG 4 cut(s) 324, 714, 731, 829
SinI GGWCC 2 cut(s) 701, 773
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 6 cut(s) 513, 618, 777, 819, 873, 930
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 6 cut(s) 33, 100, 212, 589, 741, 863
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 950
StuI AGGCCT 1 cut(s) 88
StyI CCWWGG 2 cut(s) 229, 664
TaaI ACNGT 4 cut(s) 76, 203, 325, 942
TasI AATT 6 cut(s) 513, 618, 777, 819, 873, 930
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 4 cut(s) 269, 425, 656, 818
Tru9I TTAA 4 cut(s) 269, 425, 656, 818
TscAI CASTG 4 cut(s) 185, 328, 644, 775
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 6 cut(s) 335, 338, 498, 521, 692, 738
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 4 cut(s) 301, 354, 538, 830
TspRI CASTG 4 cut(s) 185, 328, 644, 775
Van91I CCANNNNNTGG 1 cut(s) 670
Vha464I CTTAAG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 701, 773
XapI RAATTY 1 cut(s) 873
XspI CTAG 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.