Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Reverse (-)

23779502 .. 23784962

Gene Structure 5461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCCAAATCACTTCTCGCCGTCGCAGGTGGTTCTCCGCCGTCGCCTTACATAGACTGCAAAAGATTGTCTCTTTCGCCTTGTAATGCCGAAAAGGTTTTCCCCAAGACTCTTAGAAGAGAAGTAGAGGTCATGCATTGCACACAGGCTTTTGTCAATAGTAATGGTGCGGATTTGGGTACTATCCATGGGGAGGATGAAGAAGAAAATATTTCTAAGGCGACCTTAATATGGAGGGCAATAAAGTTGCCAATATACTCTGTTGCATTCATCCCTCTCACTGTAGGTAGTGCAGCTGCTTATTTAGAGACGGGCATATTTTCATCATGGCGTTATTCTATTCTTTTGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGCAATGATGTTTATGATTTCGATACAGGAGCAGATAAAAACAAGGTAGAATCGGTTGTAAATCTGGTTGGCAGCCGTACAGGCACAATTGTTGCTGCCTACTCGCTACTTGTGCTTGGCTTCATGGGGCTTACTTGGGTATCTTTTGAGGCAGGAAATATGCGGGCAATATTATTACTCGCTTGTGCAATAATTTTTGGTTATATATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGATTGGGGGAGCCATTGTGCTTTGCAGCATTTGGTCCATTTGCCACTACAGCTTTTTATTTACTGCAGGGCAGCGGAAGTAAAATGATGCATCTTCCTTTCACTGGTCCAATTCTTTCTGCATCACTTCTTGTTGGCATTACGACAACCTTAATTCTGTTCTGTAGTCACTTTCATCAGATTGAAGAAGACAAGGCGGTAGCAAAAATTTCCCCTCTGGTTAGGCTTGGCACCAAAAGAGGATCATGGGTAGTGAGATTGGCAATTATAGGACTGTATGTCCTAGCGTTTTCTTTTGGTCTAAGCAGGGCTCTTCCCATTACTTGTATATTTTTCTGTGCCTTGACCTTACCAGTGGCAAGACTGGTGGTTAGCTATGTTCAGGAAAACCATAATGATAAGCATAAAATATTCATGGCGAAGTATTACTGTGTGAGATTGCATTCTTTATTTGGAGTTGCACTCGCTGCTGGACTAGTGGTAGCGAGAACTGCCCCTAAAATTAGTATTCCAAGGTTGGCATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

384

Amino Acids

41.87

Weight (kDa)

9.02

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	90 - 348	3e-25	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	854
AccB7I	CCANNNNNTGG	1 cut(s)	628
AciI	CCGC	5 cut(s)	38, 170, 547, 699, 821
AclWI	GGATC	1 cut(s)	874
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	831
AfaI	GTAC	2 cut(s)	181, 463
AfiI	CCNNNNNNNGG	4 cut(s)	193, 231, 628, 728
AflII	CTTAAG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	809
AhdI	GACNNNNNGTC	1 cut(s)	902
AhlI	ACTAGT	1 cut(s)	1099
AluBI	AGCT	3 cut(s)	296, 677, 999
AluI	AGCT	3 cut(s)	296, 677, 999
Alw26I	GTCTC	2 cut(s)	75, 302
AlwI	GGATC	1 cut(s)	874
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	7 cut(s)	293, 296, 456, 479, 650, 696, 1091
ApoI	RAATTY	1 cut(s)	831
AspS9I	GGNCC	2 cut(s)	659, 731
AvaII	GGWCC	2 cut(s)	659, 731
BaeGI	GKGCMC	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	937
BbsI	GAAGAC	1 cut(s)	819
BbvI	GCAGC	7 cut(s)	283, 305, 466, 468, 662, 708, 1078
BceAI	ACGGC	3 cut(s)	5, 25, 444
BcoDI	GTCTC	2 cut(s)	75, 302
BcuI	ACTAGT	1 cut(s)	1099
BfaI	CTAG	2 cut(s)	908, 1100
BfmI	CTRYAG	4 cut(s)	282, 672, 689, 787
BfrI	CTTAAG	1 cut(s)	382
BfuAI	ACCTGC	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	465
BisI	GCNGC	7 cut(s)	294, 297, 457, 480, 651, 697, 1092
BlsI	GCNGC	7 cut(s)	295, 298, 458, 481, 652, 698, 1093
Bme18I	GGWCC	2 cut(s)	659, 731
BmeRI	GACNNNNNGTC	1 cut(s)	902
BmgT120I	GGNCC	2 cut(s)	659, 731
BmiI	GGNNCC	2 cut(s)	636, 856
BmsI	GCATC	3 cut(s)	702, 724, 755
BpiI	GAAGAC	1 cut(s)	819
BplI	GAGNNNNNCTC	2 cut(s)	1071, 1103
BsaJI	CCNNGG	3 cut(s)	187, 622, 1136
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 231, 628, 728
Bse1I	ACTGG	3 cut(s)	733, 977, 993
Bse3DI	GCAATG	2 cut(s)	136, 394
BseDI	CCNNGG	3 cut(s)	187, 622, 1136
BseGI	GGATG	2 cut(s)	202, 270
BseLI	CCNNNNNNNGG	4 cut(s)	193, 231, 628, 728
BseMI	GCAATG	2 cut(s)	136, 394
BseNI	ACTGG	3 cut(s)	733, 977, 993
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	7 cut(s)	283, 305, 466, 468, 662, 708, 1078
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	854
BslI	CCNNNNNNNGG	4 cut(s)	193, 231, 628, 728
BsmAI	GTCTC	2 cut(s)	75, 302
BsmBI	CGTCTC	1 cut(s)	302
BsmI	GAATGC	2 cut(s)	266, 1066
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	602, 937
Bsp143I	GATC	1 cut(s)	866
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	5 cut(s)	38, 170, 547, 699, 821
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	636, 856
BspMAI	CTGCAG	1 cut(s)	693
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	874
BspQI	GCTCTTC	1 cut(s)	942
BspT107I	GGYRCC	1 cut(s)	854
BspTI	CTTAAG	1 cut(s)	382
BsrDI	GCAATG	2 cut(s)	136, 394
BsrI	ACTGG	3 cut(s)	733, 977, 993
BssECI	CCNNGG	3 cut(s)	187, 622, 1136
BssMI	GATC	1 cut(s)	866
BssT1I	CCWWGG	3 cut(s)	187, 622, 1136
Bst4CI	ACNGT	3 cut(s)	283, 900, 1055
Bst6I	CTCTTC	2 cut(s)	112, 942
BstAFI	CTTAAG	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	1091
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	113, 216, 926
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	202, 270
BstKTI	GATC	1 cut(s)	869
BstMAI	GTCTC	2 cut(s)	75, 302
BstMBI	GATC	1 cut(s)	866
BstMWI	GCNNNNNNNGC	5 cut(s)	465, 496, 674, 1091, 1115
BstSFI	CTRYAG	4 cut(s)	282, 672, 689, 787
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	7 cut(s)	283, 305, 466, 468, 662, 708, 1078
BstV2I	GAAGAC	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	202, 270
BtsIMutI	CAGTG	4 cut(s)	279, 602, 726, 984
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	549
Cfr13I	GGNCC	2 cut(s)	659, 731
Csp6I	GTAC	2 cut(s)	180, 462
CspCI	CAANNNNNGTGG	2 cut(s)	972, 1007
CviAII	CATG	7 cut(s)	133, 188, 327, 372, 508, 870, 1039
CviQI	GTAC	2 cut(s)	180, 462
DdeI	CTNAG	3 cut(s)	113, 216, 926
DpnI	GATC	1 cut(s)	868
DpnII	GATC	1 cut(s)	866
DriI	GACNNNNNGTC	1 cut(s)	902
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	112, 942
Eam1105I	GACNNNNNGTC	1 cut(s)	902
EarI	CTCTTC	2 cut(s)	112, 942
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	187, 622, 1136
Eco24I	GRGCYC	1 cut(s)	937
Eco47I	GGWCC	2 cut(s)	659, 731
EcoT14I	CCWWGG	3 cut(s)	187, 622, 1136
EcoT22I	ATGCAT	2 cut(s)	138, 717
EcoT38I	GRGCYC	1 cut(s)	937
ErhI	CCWWGG	3 cut(s)	187, 622, 1136
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	7 cut(s)	136, 191, 330, 375, 511, 873, 1042
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	7 cut(s)	132, 187, 326, 371, 507, 869, 1038
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	7 cut(s)	294, 297, 457, 480, 651, 697, 1092
FokI	GGATG	2 cut(s)	209, 257
FriOI	GRGCYC	1 cut(s)	937
Fsp4HI	GCNGC	7 cut(s)	294, 297, 457, 480, 651, 697, 1092
FspBI	CTAG	2 cut(s)	908, 1100
GluI	GCNGC	7 cut(s)	294, 297, 457, 480, 651, 697, 1092
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	136, 191, 330, 375, 511, 873, 1042
HinfI	GANTC	2 cut(s)	109, 434
Hpy188I	TCNGA	1 cut(s)	804
Hpy188III	TCNNGA	1 cut(s)	1007
Hpy99I	CGWCG	2 cut(s)	26, 46
HpyCH4III	ACNGT	3 cut(s)	283, 900, 1055
HpyF10VI	GCNNNNNNNGC	5 cut(s)	465, 496, 674, 1091, 1115
HpyF3I	CTNAG	3 cut(s)	113, 216, 926
Hsp92II	CATG	7 cut(s)	136, 191, 330, 375, 511, 873, 1042
Kzo9I	GATC	1 cut(s)	866
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	2 cut(s)	413, 634
Lsp1109I	GCAGC	7 cut(s)	283, 305, 466, 468, 662, 708, 1078
LweI	GCATC	3 cut(s)	702, 724, 755
MaeI	CTAG	2 cut(s)	908, 1100
MaeIII	GTNAC	2 cut(s)	617, 791
MalI	GATC	1 cut(s)	868
MboI	GATC	1 cut(s)	866
MboII	GAAGA	8 cut(s)	129, 212, 215, 345, 710, 821, 824, 929
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	602, 937
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	471, 576, 735, 777, 831, 888, 1125
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	121, 187, 228, 285, 526, 849, 857
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	138, 717
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	227, 383, 614, 776
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	296, 699
MspCI	CTTAAG	1 cut(s)	382
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	2 cut(s)	266, 1066
MwoI	GCNNNNNNNGC	5 cut(s)	465, 496, 674, 1091, 1115
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	866
NlaIII	CATG	7 cut(s)	136, 191, 330, 375, 511, 873, 1042
NlaIV	GGNNCC	2 cut(s)	636, 856
NmuCI	GTSAC	1 cut(s)	791
NsiI	ATGCAT	2 cut(s)	138, 717
PaqCI	CACCTGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	942
PctI	GAATGC	2 cut(s)	266, 1066
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	7 cut(s)	295, 298, 458, 481, 652, 698, 1093
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	636, 856
PspPI	GGNCC	2 cut(s)	659, 731
PstI	CTGCAG	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	181, 463
RsaNI	GTAC	2 cut(s)	180, 462
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	4 cut(s)	227, 383, 614, 776
SatI	GCNGC	7 cut(s)	294, 297, 457, 480, 651, 697, 1092
Sau3AI	GATC	1 cut(s)	866
Sau96I	GGNCC	2 cut(s)	659, 731
SchI	GAGTC	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	602, 937
SfaNI	GCATC	3 cut(s)	702, 724, 755
SfcI	CTRYAG	4 cut(s)	282, 672, 689, 787
SinI	GGWCC	2 cut(s)	659, 731
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SpeI	ACTAGT	1 cut(s)	1099
Sse9I	AATT	7 cut(s)	471, 576, 735, 777, 831, 888, 1125
SsiI	CCGC	5 cut(s)	38, 170, 547, 699, 821
SspI	AATATT	3 cut(s)	211, 555, 1035
SspMI	CTAG	2 cut(s)	908, 1100
StyI	CCWWGG	3 cut(s)	187, 622, 1136
TaaI	ACNGT	3 cut(s)	283, 900, 1055
TaqI	TCGA	1 cut(s)	405
TasI	AATT	7 cut(s)	471, 576, 735, 777, 831, 888, 1125
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	4 cut(s)	227, 383, 614, 776
Tru9I	TTAA	4 cut(s)	227, 383, 614, 776
TscAI	CASTG	4 cut(s)	286, 602, 733, 984
TseFI	GTSAC	1 cut(s)	791
TseI	GCWGC	7 cut(s)	293, 296, 456, 479, 650, 696, 1091
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	7 cut(s)	213, 259, 312, 496, 788, 1027, 1140
TspRI	CASTG	4 cut(s)	286, 602, 733, 984
Van91I	CCANNNNNTGG	1 cut(s)	628
Vha464I	CTTAAG	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	659, 731
XapI	RAATTY	1 cut(s)	831
XspI	CTAG	2 cut(s)	908, 1100
Zsp2I	ATGCAT	2 cut(s)	138, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.