Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003507.1

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

100471 .. 106693

Gene Structure 6223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003507.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

atggcaacggcattctgtaatctcaacctgtgcggctctggtctcacgaaactaaatgactacaagaagcacacagtcctcaaaaggccttacatagactgcaaaagattgtctctttcgccttgtaatgccgaaaaggttttccccaagactcttagaagagaagtagaggtcatgcactgcacacaggcttttgtcaatagtaatggtgcggatttgggtactatccatggggaggataaagaagagagtatttctaaggcgaccttaatatggagggcaataaagttgccaatatactctgttgcattcatccctctcactgtaggtagtgcagctgcttatttagagacgggcatattttcatcatggcgttattctattcttttgatttcttctgttcttatcatcacatggctcaacttaagcaatgatgtttatgattttgatacaggagcagataaaaacaaggtagaatcggttgtaaatctggttggcagccgtacaggcacaattgttgctgcctactcgctacttgtgcttggcttcatggggcttacttgggtatcttttgaggcaggaaatgtgcgggcaatattattactcgcttgtgcaataatttttggttatatatatcagtgcccaccatttcggttaagttaccaaggattgggggagccattgtgctttgcagcatttggtccatttgccactacagctttttatttactgcagggcagcggaagtaaaatgatgcatcttcctttcactggtccaattctttctgcatcacttcttgttggcattacgacaaccttaattctgttctgtagtcactttcatcagattgaagaagacaaggcggtagcaaaaatttcccctctggttaggcttggcaccaaaagaggatcatgggtagtgagattggcaattataggactgtatgtcctagcgttttcttttggtctaagcagggctcttcccattacttgtatttttttctgtgccttgaccttaccagtggcaagactggtggttagctatgttcaggaaaaccataatgataaacataaaatattcatggcgaaatattactgtgtgagattgcattctttatttggagttgcactcgctgctggactagtggtagcgagaacggcccctaaaattagtattccaagacgtggtttgccccataatagcatagttaatgttgctatcatcatgtcatacaactcagctgtacgttctccagagaccatgtttagcgtccaggtatttggtgctgagcaggatcaggtggagggagaaaacaagtccgccatgaagttgcagaaaagttacttcgacgtgttgggcctttgctgctcacccgaagttgctctggtggagaatatcttgaagcctcttaatggtgttaaagaggtctctatcattctcccttctaaaactgtcattgtcgtccatgatagtcacctcatttcccagattcagattggtgaataccttcactcagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

506

Amino Acids

55.51

Weight (kDa)

8.94

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	896
AccB7I	CCANNNNNTGG	2 cut(s)	670, 1184
AciI	CCGC	6 cut(s)	33, 212, 589, 741, 863, 1320
AclWI	GGATC	2 cut(s)	916, 1302
AcsI	RAATTY	1 cut(s)	873
AfaI	GTAC	3 cut(s)	223, 505, 1245
AfiI	CCNNNNNNNGG	6 cut(s)	235, 273, 670, 770, 1184, 1412
AflII	CTTAAG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	1350
AgsI	TTSAA	2 cut(s)	851, 1402
AhdI	GACNNNNNGTC	1 cut(s)	944
AhlI	ACTAGT	1 cut(s)	1141
AjiI	CACGTC	2 cut(s)	1184, 1351
AjnI	CCWGG	1 cut(s)	1272
AluBI	AGCT	4 cut(s)	338, 719, 1041, 1241
AluI	AGCT	4 cut(s)	338, 719, 1041, 1241
Alw26I	GTCTC	5 cut(s)	47, 117, 344, 1250, 1432
AlwI	GGATC	2 cut(s)	916, 1302
AoxI	GGCC	3 cut(s)	86, 1158, 1357
ApeKI	GCWGC	8 cut(s)	335, 338, 498, 521, 692, 738, 1133, 1365
ApoI	RAATTY	1 cut(s)	873
Asp700I	GAANNNNTTC	1 cut(s)	1506
AspS9I	GGNCC	4 cut(s)	701, 773, 1159, 1357
AsuHPI	GGTGA	3 cut(s)	1362, 1466, 1511
AvaII	GGWCC	2 cut(s)	701, 773
BaeGI	GKGCMC	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanI	GGYRCC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	979
BbsI	GAAGAC	1 cut(s)	861
BbvI	GCAGC	8 cut(s)	325, 347, 508, 510, 704, 750, 1120, 1352
BceAI	ACGGC	3 cut(s)	24, 486, 1173
BciT130I	CCWGG	1 cut(s)	1274
BcoDI	GTCTC	5 cut(s)	47, 117, 344, 1250, 1432
BcuI	ACTAGT	1 cut(s)	1141
BfaI	CTAG	2 cut(s)	950, 1142
BfmI	CTRYAG	4 cut(s)	324, 714, 731, 829
BfrI	CTTAAG	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	9 cut(s)	34, 336, 339, 499, 522, 693, 739, 1134, 1366
BlpI	GCTNAGC	1 cut(s)	1287
BlsI	GCNGC	9 cut(s)	35, 337, 340, 500, 523, 694, 740, 1135, 1367
Bme1390I	CCNGG	1 cut(s)	1274
Bme18I	GGWCC	2 cut(s)	701, 773
BmeRI	GACNNNNNGTC	1 cut(s)	944
BmgBI	CACGTC	2 cut(s)	1184, 1351
BmgT120I	GGNCC	4 cut(s)	701, 773, 1159, 1357
BmiI	GGNNCC	3 cut(s)	678, 898, 1161
BmrFI	CCNGG	1 cut(s)	1274
BmsI	GCATC	3 cut(s)	744, 766, 797
BpiI	GAAGAC	1 cut(s)	861
BplI	GAGNNNNNCTC	2 cut(s)	1113, 1145
BpmI	CTGGAG	1 cut(s)	1236
Bpu1102I	GCTNAGC	1 cut(s)	1287
BsaI	GGTCTC	3 cut(s)	47, 1250, 1432
BsaJI	CCNNGG	2 cut(s)	229, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 273, 670, 770, 1184, 1412
Bse1I	ACTGG	3 cut(s)	775, 1019, 1035
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	1274
BseDI	CCNNGG	2 cut(s)	229, 664
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	6 cut(s)	235, 273, 670, 770, 1184, 1412
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	1251, 1278
BseNI	ACTGG	3 cut(s)	775, 1019, 1035
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	8 cut(s)	325, 347, 508, 510, 704, 750, 1120, 1352
BsgI	GTGCAG	2 cut(s)	166, 354
BshFI	GGCC	3 cut(s)	88, 1160, 1359
BshNI	GGYRCC	1 cut(s)	896
BslI	CCNNNNNNNGG	6 cut(s)	235, 273, 670, 770, 1184, 1412
BsmAI	GTCTC	5 cut(s)	47, 117, 344, 1250, 1432
BsmBI	CGTCTC	1 cut(s)	344
BsmI	GAATGC	3 cut(s)	11, 308, 1108
BsnI	GGCC	3 cut(s)	88, 1160, 1359
Bso31I	GGTCTC	3 cut(s)	47, 1250, 1432
Bsp1286I	GDGCHC	2 cut(s)	644, 979
Bsp143I	GATC	2 cut(s)	908, 1294
Bsp1720I	GCTNAGC	1 cut(s)	1287
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	6 cut(s)	33, 212, 589, 741, 863, 1320
BspANI	GGCC	3 cut(s)	88, 1160, 1359
BspCNI	CTCAG	2 cut(s)	1250, 1279
BspLI	GGNNCC	3 cut(s)	678, 898, 1161
BspMAI	CTGCAG	1 cut(s)	735
BspPI	GGATC	2 cut(s)	916, 1302
BspQI	GCTCTTC	1 cut(s)	984
BspT107I	GGYRCC	1 cut(s)	896
BspTI	CTTAAG	1 cut(s)	424
BspTNI	GGTCTC	3 cut(s)	47, 1250, 1432
BsrDI	GCAATG	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	775, 1019, 1035
BssECI	CCNNGG	2 cut(s)	229, 664
BssMI	GATC	2 cut(s)	908, 1294
BssT1I	CCWWGG	2 cut(s)	229, 664
Bst2UI	CCWGG	1 cut(s)	1274
Bst4CI	ACNGT	5 cut(s)	76, 325, 942, 1097, 1453
Bst6I	CTCTTC	3 cut(s)	154, 240, 984
BstAFI	CTTAAG	1 cut(s)	424
BstAPI	GCANNNNNTGC	1 cut(s)	1133
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	6 cut(s)	155, 258, 968, 1237, 1287, 1513
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	911, 1297
BstMAI	GTCTC	5 cut(s)	47, 117, 344, 1250, 1432
BstMBI	GATC	2 cut(s)	908, 1294
BstMWI	GCNNNNNNNGC	6 cut(s)	507, 538, 716, 1133, 1157, 1365
BstNI	CCWGG	1 cut(s)	1274
BstSCI	CCNGG	1 cut(s)	1272
BstSFI	CTRYAG	4 cut(s)	324, 714, 731, 829
BstSLI	GKGCMC	1 cut(s)	644
BstV1I	GCAGC	8 cut(s)	325, 347, 508, 510, 704, 750, 1120, 1352
BstV2I	GAAGAC	1 cut(s)	861
BstXI	CCANNNNNNTGG	1 cut(s)	1280
BsuRI	GGCC	3 cut(s)	88, 1160, 1359
BtgI	CCRYGG	1 cut(s)	229
BtrI	CACGTC	2 cut(s)	1184, 1351
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	5 cut(s)	178, 321, 644, 768, 1026
Cac8I	GCNNGC	1 cut(s)	591
Cfr13I	GGNCC	4 cut(s)	701, 773, 1159, 1357
CseI	GACGC	1 cut(s)	1258
Csp6I	GTAC	3 cut(s)	222, 504, 1244
CspCI	CAANNNNNGTGG	2 cut(s)	1014, 1049
CviQI	GTAC	3 cut(s)	222, 504, 1244
DdeI	CTNAG	6 cut(s)	155, 258, 968, 1237, 1287, 1513
DpnI	GATC	2 cut(s)	910, 1296
DpnII	GATC	2 cut(s)	908, 1294
DriI	GACNNNNNGTC	1 cut(s)	944
Eam1104I	CTCTTC	3 cut(s)	154, 240, 984
Eam1105I	GACNNNNNGTC	1 cut(s)	944
EarI	CTCTTC	3 cut(s)	154, 240, 984
EciI	GGCGGA	1 cut(s)	1309
Eco130I	CCWWGG	2 cut(s)	229, 664
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	979
Eco31I	GGTCTC	3 cut(s)	47, 1250, 1432
Eco47I	GGWCC	2 cut(s)	701, 773
EcoRII	CCWGG	1 cut(s)	1272
EcoT14I	CCWWGG	2 cut(s)	229, 664
EcoT22I	ATGCAT	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	979
ErhI	CCWWGG	2 cut(s)	229, 664
Esp3I	CGTCTC	1 cut(s)	344
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FauI	CCCGC	1 cut(s)	582
Fnu4HI	GCNGC	9 cut(s)	34, 336, 339, 499, 522, 693, 739, 1134, 1366
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	9 cut(s)	34, 336, 339, 499, 522, 693, 739, 1134, 1366
FspBI	CTAG	2 cut(s)	950, 1142
GluI	GCNGC	9 cut(s)	34, 336, 339, 499, 522, 693, 739, 1134, 1366
GsuI	CTGGAG	1 cut(s)	1236
HaeIII	GGCC	3 cut(s)	88, 1160, 1359
HgaI	GACGC	1 cut(s)	1258
HinfI	GANTC	3 cut(s)	151, 476, 1489
HphI	GGTGA	3 cut(s)	1362, 1466, 1511
Hpy188I	TCNGA	2 cut(s)	846, 1494
Hpy188III	TCNNGA	4 cut(s)	46, 1049, 1253, 1399
Hpy99I	CGWCG	1 cut(s)	1352
HpyAV	CCTTC	2 cut(s)	1452, 1517
HpyCH4III	ACNGT	5 cut(s)	76, 325, 942, 1097, 1453
HpyCH4IV	ACGT	3 cut(s)	1183, 1246, 1350
HpyF10VI	GCNNNNNNNGC	6 cut(s)	507, 538, 716, 1133, 1157, 1365
HpyF3I	CTNAG	6 cut(s)	155, 258, 968, 1237, 1287, 1513
HpySE526I	ACGT	3 cut(s)	1183, 1246, 1350
Kzo9I	GATC	2 cut(s)	908, 1294
LguI	GCTCTTC	1 cut(s)	984
LmnI	GCTCC	2 cut(s)	455, 676
Lsp1109I	GCAGC	8 cut(s)	325, 347, 508, 510, 704, 750, 1120, 1352
LweI	GCATC	3 cut(s)	744, 766, 797
MaeI	CTAG	2 cut(s)	950, 1142
MaeII	ACGT	3 cut(s)	1183, 1246, 1350
MaeIII	GTNAC	4 cut(s)	659, 833, 1340, 1472
MalI	GATC	2 cut(s)	910, 1296
MboI	GATC	2 cut(s)	908, 1294
MboII	GAAGA	7 cut(s)	171, 257, 387, 752, 863, 866, 971
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	644, 979
MluCI	AATT	7 cut(s)	513, 618, 777, 819, 873, 930, 1167
MlyI	GAGTC	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	1506
MseI	TTAA	7 cut(s)	269, 425, 656, 818, 1209, 1410, 1419
MspA1I	CMGCKG	3 cut(s)	338, 741, 1241
MspCI	CTTAAG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	1274
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	3 cut(s)	11, 308, 1108
MvaI	CCWGG	1 cut(s)	1274
MwoI	GCNNNNNNNGC	6 cut(s)	507, 538, 716, 1133, 1157, 1365
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	908, 1294
NlaIV	GGNNCC	3 cut(s)	678, 898, 1161
NmuCI	GTSAC	2 cut(s)	833, 1472
NsiI	ATGCAT	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	984
PctI	GAATGC	3 cut(s)	11, 308, 1108
PdmI	GAANNNNTTC	1 cut(s)	1506
PfeI	GAWTC	2 cut(s)	476, 1489
PflMI	CCANNNNNTGG	2 cut(s)	670, 1184
PkrI	GCNGC	9 cut(s)	35, 337, 340, 500, 523, 694, 740, 1135, 1367
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	1272
PspGI	CCWGG	1 cut(s)	1272
PspN4I	GGNNCC	3 cut(s)	678, 898, 1161
PspPI	GGNCC	4 cut(s)	701, 773, 1159, 1357
PstI	CTGCAG	1 cut(s)	735
PvuII	CAGCTG	2 cut(s)	338, 1241
RsaI	GTAC	3 cut(s)	223, 505, 1245
RsaNI	GTAC	3 cut(s)	222, 504, 1244
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	7 cut(s)	269, 425, 656, 818, 1209, 1410, 1419
SatI	GCNGC	9 cut(s)	34, 336, 339, 499, 522, 693, 739, 1134, 1366
Sau3AI	GATC	2 cut(s)	908, 1294
Sau96I	GGNCC	4 cut(s)	701, 773, 1159, 1357
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	1274
SduI	GDGCHC	2 cut(s)	644, 979
SfaNI	GCATC	3 cut(s)	744, 766, 797
SfcI	CTRYAG	4 cut(s)	324, 714, 731, 829
SinI	GGWCC	2 cut(s)	701, 773
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SpeI	ACTAGT	1 cut(s)	1141
Sse9I	AATT	7 cut(s)	513, 618, 777, 819, 873, 930, 1167
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	6 cut(s)	33, 212, 589, 741, 863, 1320
SspI	AATATT	3 cut(s)	597, 1077, 1091
SspMI	CTAG	2 cut(s)	950, 1142
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	1272
StyI	CCWWGG	2 cut(s)	229, 664
TaaI	ACNGT	5 cut(s)	76, 325, 942, 1097, 1453
TaiI	ACGT	3 cut(s)	1186, 1249, 1353
TaqI	TCGA	1 cut(s)	1347
TasI	AATT	7 cut(s)	513, 618, 777, 819, 873, 930, 1167
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	476, 1489
Tru1I	TTAA	7 cut(s)	269, 425, 656, 818, 1209, 1410, 1419
Tru9I	TTAA	7 cut(s)	269, 425, 656, 818, 1209, 1410, 1419
TscAI	CASTG	5 cut(s)	185, 328, 644, 775, 1026
TseFI	GTSAC	2 cut(s)	833, 1472
TseI	GCWGC	8 cut(s)	335, 338, 498, 521, 692, 738, 1133, 1365
Tsp45I	GTSAC	2 cut(s)	833, 1472
TspDTI	ATGAA	6 cut(s)	301, 354, 538, 830, 1069, 1340
TspRI	CASTG	5 cut(s)	185, 328, 644, 775, 1026
Van91I	CCANNNNNTGG	2 cut(s)	670, 1184
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	701, 773
XapI	RAATTY	1 cut(s)	873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1493
XmnI	GAANNNNTTC	1 cut(s)	1506
XspI	CTAG	2 cut(s)	950, 1142
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.