Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

26530313 .. 26534180

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33511.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCAACAGCGTTCTGTAGTCTCAACATGTTGGGGTCTGGTCTCTCACAACTAAATGAGTACAACCTTAAGAAGAAGCACGCAATCTTCACAAGGTCTTGTTTACACTCGAGAAGATTGTTTGGTTCGTCTCTTAATGCCGAAAAGGTTTCCCCCGGAACTAATAGAAGAGTAGAGGTCAAGCATTGCCCACAGGCATTTCCTTCTAATTCGAAGGATAAAGAAGAAGAGAATATTTCGAAGGCAACCTTGATATGGAGGGCAATAAAGTTGCCTATATACTTTGTTGCATTTATCCCTCTCACTGTAGGTAGTGCAGCTGCTTATTTCGAGACGGGCATTTTTTCATGGTGGCGTTATTCTCTTCTTTCGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGCAATGATGTTTATGATTTTGATACAGGAGCAGATAAAAACAAGTTAGAATCAGTTGTAAATCTGGTTGGCAGCCGTACAGGCACAATTGTTGCTGCCTACGCGCTGCTTGTGCTTGGCTTCATGGGGCTTGCTTGGGTATCTTTTGAGGCAGGAAATATGCGTGCAATATTATTACTCGCTTGTGCAATAATTTTTGGTTATATATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGGTTGGGGGAGCCATTGTGCTTTTCAGCATTTGGTCCATTCGCCACTACAGCTTTTTATTTACTGCAGGGCAGTGGAAGTCAAATGATGCATCTTCCTTTCACTGGTTCAATTCTTTCCGCATCACTACTTGTTGGCATTACGACAACCTTAATTCTGTTCTGTAGTCACTTTCATCAGATTGAAGAAGACAGGGCGGTAGCAAAAATGTCCCCTCTGGTTAGGCTTGGCAGCAAAAGAGGATCAGGGGTAGTTCAATTAGCAATTGCAGGACTCTATGTTCTAGCTTTTGCTTTTGGTATAAGCAGGGCTCTTCCCATAACTTGTATTTTTTTCTGTGCCTTCACCTTACCAGTGGCAAGACTGGTGGTTAGCTATGTGCAAGAAAACCATAATGATAAACACAAGATATTCATGGCAAAGTATTTCTGTGTGAGATTGCATTCTTTATTTGGAGTTGCGTTGGCTGCTGGACTTGTGGTAGCGAGAACGGGCCCTAAACCTAGTATTCCAAGGTTGGCATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

393

Amino Acids

42.99

Weight (kDa)

9.45

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	98 - 355	1e-23	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccII	CGCG	1 cut(s)	512
AciI	CCGC	2 cut(s)	768, 845
AclWI	GGATC	1 cut(s)	898
AfaI	GTAC	2 cut(s)	62, 487
AfiI	CCNNNNNNNGG	3 cut(s)	255, 652, 752
AflII	CTTAAG	2 cut(s)	68, 406
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	759, 833, 905
AloI	GAACNNNNNNTCC	2 cut(s)	912, 944
AluBI	AGCT	4 cut(s)	320, 701, 935, 1023
AluI	AGCT	4 cut(s)	320, 701, 935, 1023
Alw26I	GTCTC	4 cut(s)	26, 47, 135, 326
AlwI	GGATC	1 cut(s)	898
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	1141
ApaI	GGGCCC	1 cut(s)	1145
ApeKI	GCWGC	7 cut(s)	317, 320, 480, 503, 514, 879, 1115
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	683, 1141, 1142
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	985
AsuII	TTCGAA	2 cut(s)	212, 239
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	683
BaeGI	GKGCMC	2 cut(s)	626, 1145
BanII	GRGCYC	2 cut(s)	961, 1145
BbsI	GAAGAC	1 cut(s)	843
BbvI	GCAGC	7 cut(s)	307, 329, 490, 492, 501, 891, 1102
BceAI	ACGGC	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	4 cut(s)	26, 47, 135, 326
BfaI	CTAG	2 cut(s)	932, 1152
BfmI	CTRYAG	5 cut(s)	16, 306, 696, 713, 811
BfrI	CTTAAG	2 cut(s)	68, 406
BglI	GCCNNNNNGGC	1 cut(s)	489
BisI	GCNGC	7 cut(s)	318, 321, 481, 504, 515, 880, 1116
BlsI	GCNGC	7 cut(s)	319, 322, 482, 505, 516, 881, 1117
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	683, 1141, 1142
BmiI	GGNNCC	2 cut(s)	660, 1143
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	726, 748, 779
BpiI	GAAGAC	1 cut(s)	843
Bpu14I	TTCGAA	2 cut(s)	212, 239
BpuMI	CCSGG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	154, 646, 1160
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	255, 652, 752
Bse1I	ACTGG	3 cut(s)	757, 1001, 1017
Bse3DI	GCAATG	2 cut(s)	184, 418
BseDI	CCNNGG	3 cut(s)	154, 646, 1160
BseLI	CCNNNNNNNGG	3 cut(s)	255, 652, 752
BseMI	GCAATG	2 cut(s)	184, 418
BseNI	ACTGG	3 cut(s)	757, 1001, 1017
BseSI	GKGCMC	2 cut(s)	626, 1145
BseXI	GCAGC	7 cut(s)	307, 329, 490, 492, 501, 891, 1102
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	1 cut(s)	1143
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	844
BslI	CCNNNNNNNGG	3 cut(s)	255, 652, 752
BsmAI	GTCTC	4 cut(s)	26, 47, 135, 326
BsmBI	CGTCTC	2 cut(s)	135, 326
BsmFI	GGGAC	1 cut(s)	844
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	1 cut(s)	1143
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	109
Bsp119I	TTCGAA	2 cut(s)	212, 239
Bsp120I	GGGCCC	1 cut(s)	1141
Bsp1286I	GDGCHC	3 cut(s)	626, 961, 1145
Bsp143I	GATC	1 cut(s)	890
BspACI	CCGC	2 cut(s)	768, 845
BspANI	GGCC	1 cut(s)	1143
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	660, 1143
BspMAI	CTGCAG	1 cut(s)	717
BspPI	GGATC	1 cut(s)	898
BspQI	GCTCTTC	1 cut(s)	966
BspT104I	TTCGAA	2 cut(s)	212, 239
BspTI	CTTAAG	2 cut(s)	68, 406
BspTNI	GGTCTC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	184, 418
BsrI	ACTGG	3 cut(s)	757, 1001, 1017
BssECI	CCNNGG	3 cut(s)	154, 646, 1160
BssMI	GATC	1 cut(s)	890
BssT1I	CCWWGG	2 cut(s)	646, 1160
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	4 cut(s)	163, 222, 369, 966
BstAFI	CTTAAG	2 cut(s)	68, 406
BstBI	TTCGAA	2 cut(s)	212, 239
BstC8I	GCNNGC	3 cut(s)	81, 540, 573
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	1 cut(s)	893
BstMAI	GTCTC	4 cut(s)	26, 47, 135, 326
BstMBI	GATC	1 cut(s)	890
BstMWI	GCNNNNNNNGC	5 cut(s)	489, 509, 520, 698, 1115
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	5 cut(s)	16, 306, 696, 713, 811
BstSLI	GKGCMC	2 cut(s)	626, 1145
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	7 cut(s)	307, 329, 490, 492, 501, 891, 1102
BstV2I	GAAGAC	1 cut(s)	843
BsuRI	GGCC	1 cut(s)	1143
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	5 cut(s)	303, 626, 727, 750, 1008
Cac8I	GCNNGC	3 cut(s)	81, 540, 573
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	683, 1141, 1142
Csp6I	GTAC	2 cut(s)	61, 486
CspCI	CAANNNNNGTGG	2 cut(s)	996, 1031
CviAII	CATG	5 cut(s)	28, 348, 396, 532, 1063
CviQI	GTAC	2 cut(s)	61, 486
DpnI	GATC	1 cut(s)	892
DpnII	GATC	1 cut(s)	890
Eam1104I	CTCTTC	4 cut(s)	163, 222, 369, 966
EarI	CTCTTC	4 cut(s)	163, 222, 369, 966
Eco130I	CCWWGG	2 cut(s)	646, 1160
Eco24I	GRGCYC	2 cut(s)	961, 1145
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	1142
EcoT14I	CCWWGG	2 cut(s)	646, 1160
EcoT22I	ATGCAT	1 cut(s)	741
EcoT38I	GRGCYC	2 cut(s)	961, 1145
ErhI	CCWWGG	2 cut(s)	646, 1160
Esp3I	CGTCTC	2 cut(s)	135, 326
FaeI	CATG	5 cut(s)	31, 351, 399, 535, 1066
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	844
FatI	CATG	5 cut(s)	27, 347, 395, 531, 1062
Fnu4HI	GCNGC	7 cut(s)	318, 321, 481, 504, 515, 880, 1116
FriOI	GRGCYC	2 cut(s)	961, 1145
Fsp4HI	GCNGC	7 cut(s)	318, 321, 481, 504, 515, 880, 1116
FspBI	CTAG	2 cut(s)	932, 1152
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	7 cut(s)	318, 321, 481, 504, 515, 880, 1116
HaeIII	GGCC	1 cut(s)	1143
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	31, 351, 399, 535, 1066
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	2 cut(s)	458, 921
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	985
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	828
Hpy188III	TCNNGA	2 cut(s)	111, 331
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	208, 213, 235, 1000
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	9 cut(s)	290, 317, 575, 596, 715, 739, 917, 1030, 1090
HpyF10VI	GCNNNNNNNGC	5 cut(s)	489, 509, 520, 698, 1115
Hsp92II	CATG	5 cut(s)	31, 351, 399, 535, 1066
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	1 cut(s)	890
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	437, 658
Lsp1109I	GCAGC	7 cut(s)	307, 329, 490, 492, 501, 891, 1102
LweI	GCATC	3 cut(s)	726, 748, 779
MaeI	CTAG	2 cut(s)	932, 1152
MaeIII	GTNAC	2 cut(s)	641, 815
MalI	GATC	1 cut(s)	892
MboI	GATC	1 cut(s)	890
MfeI	CAATTG	2 cut(s)	495, 912
MhlI	GDGCHC	3 cut(s)	626, 961, 1145
MluCI	AATT	7 cut(s)	208, 495, 600, 759, 801, 905, 912
MlyI	GAGTC	1 cut(s)	915
MnlI	CCTC	6 cut(s)	169, 252, 309, 550, 873, 881
Mph1103I	ATGCAT	1 cut(s)	741
MseI	TTAA	5 cut(s)	69, 135, 407, 638, 800
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	2 cut(s)	68, 406
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	2 cut(s)	495, 912
Mva1269I	GAATGC	1 cut(s)	1090
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	5 cut(s)	489, 509, 520, 698, 1115
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	890
NlaIII	CATG	5 cut(s)	31, 351, 399, 535, 1066
NlaIV	GGNNCC	2 cut(s)	660, 1143
NmuCI	GTSAC	1 cut(s)	815
NsiI	ATGCAT	1 cut(s)	741
NspI	RCATGY	1 cut(s)	31
NspV	TTCGAA	2 cut(s)	212, 239
PaeR7I	CTCGAG	1 cut(s)	109
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	966
PctI	GAATGC	1 cut(s)	1090
PfeI	GAWTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	7 cut(s)	319, 322, 482, 505, 516, 881, 1117
PleI	GAGTC	1 cut(s)	915
PpsI	GAGTC	1 cut(s)	915
PscI	ACATGT	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	660, 1143
PspOMI	GGGCCC	1 cut(s)	1141
PspPI	GGNCC	3 cut(s)	683, 1141, 1142
PstI	CTGCAG	1 cut(s)	717
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	62, 487
RsaNI	GTAC	2 cut(s)	61, 486
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	5 cut(s)	69, 135, 407, 638, 800
SatI	GCNGC	7 cut(s)	318, 321, 481, 504, 515, 880, 1116
Sau3AI	GATC	1 cut(s)	890
Sau96I	GGNCC	3 cut(s)	683, 1141, 1142
SchI	GAGTC	1 cut(s)	915
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	3 cut(s)	626, 961, 1145
SfaNI	GCATC	3 cut(s)	726, 748, 779
SfcI	CTRYAG	5 cut(s)	16, 306, 696, 713, 811
Sfr274I	CTCGAG	1 cut(s)	109
SfuI	TTCGAA	2 cut(s)	212, 239
SinI	GGWCC	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	3 cut(s)	68, 109, 406
SmoI	CTYRAG	3 cut(s)	68, 109, 406
Sse9I	AATT	7 cut(s)	208, 495, 600, 759, 801, 905, 912
SsiI	CCGC	2 cut(s)	768, 845
SspI	AATATT	2 cut(s)	235, 579
SspMI	CTAG	2 cut(s)	932, 1152
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	646, 1160
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	5 cut(s)	110, 212, 239, 330, 371
TasI	AATT	7 cut(s)	208, 495, 600, 759, 801, 905, 912
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	5 cut(s)	69, 135, 407, 638, 800
Tru9I	TTAA	5 cut(s)	69, 135, 407, 638, 800
TscAI	CASTG	5 cut(s)	310, 626, 727, 757, 1008
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	7 cut(s)	317, 320, 480, 503, 514, 879, 1115
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	5 cut(s)	336, 520, 812, 1051, 1164
TspRI	CASTG	5 cut(s)	310, 626, 727, 757, 1008
Van91I	CCANNNNNTGG	1 cut(s)	652
Vha464I	CTTAAG	2 cut(s)	68, 406
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	2 cut(s)	932, 1152
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.