Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

58320505 .. 58326944

Gene Structure 6440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTTTGCTACAGCATTCTAAGAAGGCAGATGGCAACGGCATTCTGTAATCTCAACCTGTGCGGCTCTGGTCTCACGAAACTAAATGACTACAAGAATCACACAGTCCTCAAAAGGCAAGTTCCACCCTCACTTTCTGCAATTTTGGCTGCTTTGCCTTACATAGACTGCAAAAGATTGTCTCTTTCGCCTTGTAATGCCGAAAAGGTTTTCCCCAAGACTCTTAGAAGAGAAGTTGAGGCCATGCACTGCACACAGGCTTTTGATAAAGAAGAGAGTATTTCTAAGGCGACCTTAATATGGAGGGCAATAAAGTTGCCAATATACTCTGTTGCATTCATCCCTCTCACTGTAGGTAGTGCAGCTGCTTATTTAGAGACGGGCATATTTTCATCATGGCGTTGTTCTATTCTTTTGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGCAATGATGTTTATGATTTCGATACAGGAGCAGATAAAAACAAGGTGGAATCGGTTGTAAATCTGGTTGGCAGCCGTACAGGCACAATTGTTGCTGCCTACTCGCTACTTGTGCTTGGCTTCATGGGGCTTACTTGGGTATCTTTTGAGGCAGGAAATATGCGGGCAATATTATTACTTGCTTGTGCAATAATTTTTGGTTATATATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGATTGGGGGAGCCATTGTGCTTTGCAGCATTTGGTCCATTTGCCACTACAGCTTTTTATTTACTGCAGGGCAGCGGAAGTAAAATGATGCATCTTCCTTTCACTGGTCCAATTCTTTCTGCATCACTTCTTGTTGGCATTACGACAACCTTAATTCTGTTCTGTAGTCACTTTCATCAGATTGAAGAAGACAAGGCGGTAGCAAAAATTTCCCCTCTGGTTAGGCTTGGCACCAAAAGAGGATCATGGGTAGTGAGATTGGCAATTATAGGACTGTATGTCCTAGCGTTTTCTTTTGGTCTAAGCAGGGCTCTTCCCATTACTTGTATTTTTTTCTGTGCCTTGACCTTACCAGTGGCAAGACTGGTGGATAAACATAAAATATTCATGGCGAAATATTACTGTGTGAGATTGCATTCTTTATTTGGAGTTGCACTCGCTGCTGGACTAGTGGTAGCGAGAACGGCCCCTAAAATTAGTATTCCAAGGTTGGCATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

398

Amino Acids

43.72

Weight (kDa)

9.42

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	113 - 356	1.1e-22	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	697
AciI	CCGC	4 cut(s)	63, 616, 768, 890
AclWI	GGATC	1 cut(s)	943
AcsI	RAATTY	1 cut(s)	900
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	3 cut(s)	300, 697, 797
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	878
AhdI	GACNNNNNGTC	1 cut(s)	971
AhlI	ACTAGT	1 cut(s)	1141
AluBI	AGCT	2 cut(s)	365, 746
AluI	AGCT	2 cut(s)	365, 746
Alw26I	GTCTC	3 cut(s)	77, 186, 371
AlwI	GGATC	1 cut(s)	943
AoxI	GGCC	2 cut(s)	240, 1158
ApeKI	GCWGC	8 cut(s)	149, 362, 365, 525, 548, 719, 765, 1133
ApoI	RAATTY	1 cut(s)	900
AspS9I	GGNCC	3 cut(s)	728, 800, 1159
AvaII	GGWCC	2 cut(s)	728, 800
BaeGI	GKGCMC	1 cut(s)	671
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BanI	GGYRCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	1006
BbsI	GAAGAC	1 cut(s)	888
BbvI	GCAGC	8 cut(s)	136, 352, 374, 535, 537, 731, 777, 1120
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	3 cut(s)	54, 513, 1173
BcoDI	GTCTC	3 cut(s)	77, 186, 371
BcuI	ACTAGT	1 cut(s)	1141
BfaI	CTAG	2 cut(s)	977, 1142
BfmI	CTRYAG	5 cut(s)	10, 351, 741, 758, 856
BfrI	CTTAAG	1 cut(s)	451
BglI	GCCNNNNNGGC	1 cut(s)	534
BisI	GCNGC	9 cut(s)	64, 150, 363, 366, 526, 549, 720, 766, 1134
BlsI	GCNGC	9 cut(s)	65, 151, 364, 367, 527, 550, 721, 767, 1135
Bme18I	GGWCC	2 cut(s)	728, 800
BmeRI	GACNNNNNGTC	1 cut(s)	971
BmgT120I	GGNCC	3 cut(s)	728, 800, 1159
BmiI	GGNNCC	3 cut(s)	705, 925, 1161
BmsI	GCATC	3 cut(s)	771, 793, 824
BpiI	GAAGAC	1 cut(s)	888
BplI	GAGNNNNNCTC	2 cut(s)	1113, 1145
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	691, 1178
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 697, 797
Bse1I	ACTGG	3 cut(s)	802, 1046, 1062
Bse3DI	GCAATG	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	691, 1178
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	300, 697, 797
BseMI	GCAATG	1 cut(s)	463
BseNI	ACTGG	3 cut(s)	802, 1046, 1062
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	8 cut(s)	136, 352, 374, 535, 537, 731, 777, 1120
BsgI	GTGCAG	2 cut(s)	235, 381
BshFI	GGCC	2 cut(s)	242, 1160
BshNI	GGYRCC	1 cut(s)	923
BslI	CCNNNNNNNGG	3 cut(s)	300, 697, 797
BsmAI	GTCTC	3 cut(s)	77, 186, 371
BsmBI	CGTCTC	1 cut(s)	371
BsmI	GAATGC	4 cut(s)	15, 41, 335, 1108
BsnI	GGCC	2 cut(s)	242, 1160
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	671, 1006
Bsp143I	GATC	1 cut(s)	935
BspACI	CCGC	4 cut(s)	63, 616, 768, 890
BspANI	GGCC	2 cut(s)	242, 1160
BspLI	GGNNCC	3 cut(s)	705, 925, 1161
BspMAI	CTGCAG	1 cut(s)	762
BspPI	GGATC	1 cut(s)	943
BspQI	GCTCTTC	1 cut(s)	1011
BspT107I	GGYRCC	1 cut(s)	923
BspTI	CTTAAG	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	802, 1046, 1062
BssECI	CCNNGG	2 cut(s)	691, 1178
BssMI	GATC	1 cut(s)	935
BssT1I	CCWWGG	2 cut(s)	691, 1178
Bst4CI	ACNGT	4 cut(s)	106, 352, 969, 1097
Bst6I	CTCTTC	3 cut(s)	223, 267, 1011
BstAFI	CTTAAG	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	1133
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	4 cut(s)	20, 224, 285, 995
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	938
BstMAI	GTCTC	3 cut(s)	77, 186, 371
BstMBI	GATC	1 cut(s)	935
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 534, 565, 743, 1133, 1157
BstSFI	CTRYAG	5 cut(s)	10, 351, 741, 758, 856
BstSLI	GKGCMC	1 cut(s)	671
BstV1I	GCAGC	8 cut(s)	136, 352, 374, 535, 537, 731, 777, 1120
BstV2I	GAAGAC	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	242, 1160
BtsCI	GGATG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	5 cut(s)	247, 348, 671, 795, 1053
Cac8I	GCNNGC	1 cut(s)	618
Cfr13I	GGNCC	3 cut(s)	728, 800, 1159
Csp6I	GTAC	1 cut(s)	531
CspCI	CAANNNNNGTGG	2 cut(s)	1041, 1076
CviAII	CATG	6 cut(s)	244, 396, 441, 577, 939, 1081
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	4 cut(s)	20, 224, 285, 995
DpnI	GATC	1 cut(s)	937
DpnII	GATC	1 cut(s)	935
DriI	GACNNNNNGTC	1 cut(s)	971
Eam1104I	CTCTTC	3 cut(s)	223, 267, 1011
Eam1105I	GACNNNNNGTC	1 cut(s)	971
EarI	CTCTTC	3 cut(s)	223, 267, 1011
Eco130I	CCWWGG	2 cut(s)	691, 1178
Eco24I	GRGCYC	1 cut(s)	1006
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	728, 800
EcoT14I	CCWWGG	2 cut(s)	691, 1178
EcoT22I	ATGCAT	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	1006
ErhI	CCWWGG	2 cut(s)	691, 1178
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	6 cut(s)	247, 399, 444, 580, 942, 1084
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	6 cut(s)	243, 395, 440, 576, 938, 1080
FauI	CCCGC	1 cut(s)	609
Fnu4HI	GCNGC	9 cut(s)	64, 150, 363, 366, 526, 549, 720, 766, 1134
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	1006
Fsp4HI	GCNGC	9 cut(s)	64, 150, 363, 366, 526, 549, 720, 766, 1134
FspBI	CTAG	2 cut(s)	977, 1142
GluI	GCNGC	9 cut(s)	64, 150, 363, 366, 526, 549, 720, 766, 1134
HaeIII	GGCC	2 cut(s)	242, 1160
Hin1II	CATG	6 cut(s)	247, 399, 444, 580, 942, 1084
HinfI	GANTC	3 cut(s)	97, 220, 503
Hpy188I	TCNGA	1 cut(s)	873
Hpy188III	TCNNGA	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	4 cut(s)	106, 352, 969, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 534, 565, 743, 1133, 1157
HpyF3I	CTNAG	4 cut(s)	20, 224, 285, 995
Hsp92II	CATG	6 cut(s)	247, 399, 444, 580, 942, 1084
Kzo9I	GATC	1 cut(s)	935
LguI	GCTCTTC	1 cut(s)	1011
LmnI	GCTCC	2 cut(s)	482, 703
Lsp1109I	GCAGC	8 cut(s)	136, 352, 374, 535, 537, 731, 777, 1120
LweI	GCATC	3 cut(s)	771, 793, 824
MaeI	CTAG	2 cut(s)	977, 1142
MaeIII	GTNAC	2 cut(s)	686, 860
MalI	GATC	1 cut(s)	937
MboI	GATC	1 cut(s)	935
MboII	GAAGA	7 cut(s)	240, 284, 414, 779, 890, 893, 998
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	2 cut(s)	671, 1006
MluCI	AATT	8 cut(s)	141, 540, 645, 804, 846, 900, 957, 1167
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	8 cut(s)	119, 139, 232, 297, 354, 595, 918, 926
Mph1103I	ATGCAT	1 cut(s)	786
MseI	TTAA	4 cut(s)	296, 452, 683, 845
MspA1I	CMGCKG	2 cut(s)	365, 768
MspCI	CTTAAG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	4 cut(s)	15, 41, 335, 1108
MwoI	GCNNNNNNNGC	6 cut(s)	146, 534, 565, 743, 1133, 1157
NdeII	GATC	1 cut(s)	935
NlaIII	CATG	6 cut(s)	247, 399, 444, 580, 942, 1084
NlaIV	GGNNCC	3 cut(s)	705, 925, 1161
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	1011
PctI	GAATGC	4 cut(s)	15, 41, 335, 1108
PfeI	GAWTC	2 cut(s)	97, 503
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	9 cut(s)	65, 151, 364, 367, 527, 550, 721, 767, 1135
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	705, 925, 1161
PspPI	GGNCC	3 cut(s)	728, 800, 1159
PstI	CTGCAG	1 cut(s)	762
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	1011
SaqAI	TTAA	4 cut(s)	296, 452, 683, 845
SatI	GCNGC	9 cut(s)	64, 150, 363, 366, 526, 549, 720, 766, 1134
Sau3AI	GATC	1 cut(s)	935
Sau96I	GGNCC	3 cut(s)	728, 800, 1159
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	2 cut(s)	671, 1006
SfaNI	GCATC	3 cut(s)	771, 793, 824
SfcI	CTRYAG	5 cut(s)	10, 351, 741, 758, 856
SinI	GGWCC	2 cut(s)	728, 800
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SpeI	ACTAGT	1 cut(s)	1141
Sse9I	AATT	8 cut(s)	141, 540, 645, 804, 846, 900, 957, 1167
SsiI	CCGC	4 cut(s)	63, 616, 768, 890
SspI	AATATT	3 cut(s)	624, 1077, 1091
SspMI	CTAG	2 cut(s)	977, 1142
StyI	CCWWGG	2 cut(s)	691, 1178
TaaI	ACNGT	4 cut(s)	106, 352, 969, 1097
TaqI	TCGA	1 cut(s)	474
TasI	AATT	8 cut(s)	141, 540, 645, 804, 846, 900, 957, 1167
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	97, 503
Tru1I	TTAA	4 cut(s)	296, 452, 683, 845
Tru9I	TTAA	4 cut(s)	296, 452, 683, 845
TscAI	CASTG	5 cut(s)	254, 355, 671, 802, 1053
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	8 cut(s)	149, 362, 365, 525, 548, 719, 765, 1133
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	6 cut(s)	328, 381, 565, 857, 1069, 1182
TspRI	CASTG	5 cut(s)	254, 355, 671, 802, 1053
Van91I	CCANNNNNTGG	1 cut(s)	697
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	728, 800
XapI	RAATTY	1 cut(s)	900
XspI	CTAG	2 cut(s)	977, 1142
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.