Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015495

Physical Location & Seq

Genomic Coordinates Forward (+)

64401568 .. 64407090

Gene Structure 5523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG434300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCACTGCACACAGGCTTTTGTCAATGGTAATGGTGCGGATTTGGGTACTATCCATGGGGAGGATAAAGAAGAGAGTATTTCTAAGGCGACCTTAATATGGAGGGCAATAAAGTTGCCAATATACTCTGTTGCATTCATCCCTCTCACTGTAGGTAGTGCAGCTGCCTATTTGGAGACGGGCATATTTTCATCATGGCGCTATTCTATTCTTTTGATTTCTTCTGTTCTTATCATCACATGGCTCAACTTAAGCAATGATGTTTATGATTTCGATACAGGAGCAGATAAAAACAAGGTAGAATCTGTTGTAAATCTGGTTGGCAGCCGTACAGGCACAATTGTTGCTGCCTACTCGCTACTTGTGCTTGGCTTCATGGGGCTTACTTGGGTATCTTTTGAGGCAGGAAATATGCGGGCAATATTATTACTCGCTTGTGCAATAATTTTTGGTTATATATATCAGTGCCCACCATTTCGGTTAAGTTACCAAGGATTGGGGGAGCCATTGTGCTTTGCAGCATTTGGTCCATTTGCCACTACAGCTTTTTATTTACTGCAAGGCAGCGGAAGTAAAATGATGCATCTTCCTTTCACTGGTCCAATTCTTTCTGCATCACTTCTTGTTGGCATTACGACAACCTTAATTCTGTTCTGTAGTCACTTTCATCAGATTGAAGAAGACAAGGCAGTAGCAAAAATTTCCCCTCTGGTTAGGCTTGGCACCGAAAGAGGATCATGGGTAGTGAGATTGGCAATTATAGGACTGTATGTCCTAGCTTTTTCTTTTGGTCTAAGCAGGGCTCTTCCCATTACTTGTATATTTTTCTGTGCCTCGACCTTACCAGTGGCAAGACTGGTGGTTAGCTATGTTCAGGAAAACCATAATGATAAACATAAAATATTCATGGCGAAGTATTACTGTGTGAGATTGCATTCTTTATTTGGAGTTGCACTCGCTGCTGGACTAGTGGTAGCGAGAACGGCCCCTAAAATTAGTATTCCAAGGTTGGCATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009536 GO:0009767 GO:0009772 GO:0009987 GO:0010236 GO:0015979 GO:0016740 GO:0016765 GO:0019684 GO:0022900 GO:0032194 GO:0042180 GO:0042181 GO:0042362 GO:0042371 GO:0042372 GO:0042373 GO:0042374 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046428 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

340

Amino Acids

37.04

Weight (kDa)

8.86

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	46 - 303	5.3e-25	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60600 AT1G60600
fragaria_vesca	FvH4_6g33511
malus_domestica	MD10G1052500.v1.1
prunus_persica	Prupe.8G064500_v2.0.a1
pyrus_communis	pycom10g03740
rosa_chinensis	RchiOBHm_Chr2g0143381
rosa_laevigata	RLG00000020034
rosa_multiflora	Rmu_sc0003507.1_g000020
rosa_roxburghii	Rroxscaffold_2G00101860
rosa_rugosa	Rorug02G0381200
rosa_samantha	Rh2AG434300 Rh2BG442000 Rh2CG420200 Rh2DG452200
rosa_wichuraiana	Rw2G035390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	3 cut(s)	38, 415, 567
AclWI	GGATC	1 cut(s)	742
AcsI	RAATTY	1 cut(s)	699
AfaI	GTAC	2 cut(s)	49, 331
AfiI	CCNNNNNNNGG	4 cut(s)	61, 99, 496, 596
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	677
AhdI	GACNNNNNGTC	1 cut(s)	770
AhlI	ACTAGT	1 cut(s)	967
AluBI	AGCT	4 cut(s)	164, 545, 779, 867
AluI	AGCT	4 cut(s)	164, 545, 779, 867
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	742
AoxI	GGCC	1 cut(s)	984
ApeKI	GCWGC	7 cut(s)	161, 164, 324, 347, 518, 564, 959
ApoI	RAATTY	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	3 cut(s)	527, 599, 985
AvaII	GGWCC	2 cut(s)	527, 599
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	7 cut(s)	151, 173, 334, 336, 530, 576, 946
BceAI	ACGGC	2 cut(s)	312, 999
BcoDI	GTCTC	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	2 cut(s)	776, 968
BfmI	CTRYAG	3 cut(s)	150, 540, 655
BfoI	RGCGCY	1 cut(s)	202
BfrI	CTTAAG	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	7 cut(s)	162, 165, 325, 348, 519, 565, 960
BlsI	GCNGC	7 cut(s)	163, 166, 326, 349, 520, 566, 961
Bme18I	GGWCC	2 cut(s)	527, 599
BmeRI	GACNNNNNGTC	1 cut(s)	770
BmgT120I	GGNCC	3 cut(s)	527, 599, 985
BmiI	GGNNCC	3 cut(s)	504, 724, 987
BmsI	GCATC	3 cut(s)	570, 592, 623
BpiI	GAAGAC	1 cut(s)	687
BplI	GAGNNNNNCTC	2 cut(s)	939, 971
BsaJI	CCNNGG	3 cut(s)	55, 490, 1004
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 99, 496, 596
Bse1I	ACTGG	3 cut(s)	601, 845, 861
Bse3DI	GCAATG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	55, 490, 1004
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	4 cut(s)	61, 99, 496, 596
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	3 cut(s)	601, 845, 861
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	7 cut(s)	151, 173, 334, 336, 530, 576, 946
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	986
BshNI	GGYRCC	1 cut(s)	722
BslI	CCNNNNNNNGG	4 cut(s)	61, 99, 496, 596
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	134, 934
BsnI	GGCC	1 cut(s)	986
Bsp1286I	GDGCHC	2 cut(s)	470, 805
Bsp143I	GATC	1 cut(s)	734
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	3 cut(s)	38, 415, 567
BspANI	GGCC	1 cut(s)	986
BspLI	GGNNCC	3 cut(s)	504, 724, 987
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	722
BspTI	CTTAAG	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	601, 845, 861
BssECI	CCNNGG	3 cut(s)	55, 490, 1004
BssMI	GATC	1 cut(s)	734
BssT1I	CCWWGG	3 cut(s)	55, 490, 1004
Bst4CI	ACNGT	3 cut(s)	151, 768, 923
Bst6I	CTCTTC	2 cut(s)	66, 810
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	84, 794
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	737
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	734
BstMWI	GCNNNNNNNGC	5 cut(s)	333, 364, 542, 959, 983
BstSFI	CTRYAG	3 cut(s)	150, 540, 655
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	7 cut(s)	151, 173, 334, 336, 530, 576, 946
BstV2I	GAAGAC	1 cut(s)	687
BsuRI	GGCC	1 cut(s)	986
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	4
BtsIMutI	CAGTG	5 cut(s)	4, 147, 470, 594, 852
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	3 cut(s)	527, 599, 985
Csp6I	GTAC	2 cut(s)	48, 330
CspCI	CAANNNNNGTGG	2 cut(s)	840, 875
CviAII	CATG	6 cut(s)	56, 195, 240, 376, 738, 907
CviQI	GTAC	2 cut(s)	48, 330
DdeI	CTNAG	2 cut(s)	84, 794
DpnI	GATC	1 cut(s)	736
DpnII	GATC	1 cut(s)	734
DriI	GACNNNNNGTC	1 cut(s)	770
Eam1104I	CTCTTC	2 cut(s)	66, 810
Eam1105I	GACNNNNNGTC	1 cut(s)	770
EarI	CTCTTC	2 cut(s)	66, 810
Eco130I	CCWWGG	3 cut(s)	55, 490, 1004
Eco24I	GRGCYC	1 cut(s)	805
Eco47I	GGWCC	2 cut(s)	527, 599
EcoT14I	CCWWGG	3 cut(s)	55, 490, 1004
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	3 cut(s)	55, 490, 1004
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	6 cut(s)	59, 198, 243, 379, 741, 910
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	6 cut(s)	55, 194, 239, 375, 737, 906
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	7 cut(s)	162, 165, 325, 348, 519, 565, 960
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	7 cut(s)	162, 165, 325, 348, 519, 565, 960
FspBI	CTAG	2 cut(s)	776, 968
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	7 cut(s)	162, 165, 325, 348, 519, 565, 960
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	986
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	59, 198, 243, 379, 741, 910
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	1 cut(s)	875
HpyCH4III	ACNGT	3 cut(s)	151, 768, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	333, 364, 542, 959, 983
HpyF3I	CTNAG	2 cut(s)	84, 794
Hsp92II	CATG	6 cut(s)	59, 198, 243, 379, 741, 910
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	734
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	281, 502
Lsp1109I	GCAGC	7 cut(s)	151, 173, 334, 336, 530, 576, 946
LweI	GCATC	3 cut(s)	570, 592, 623
MaeI	CTAG	2 cut(s)	776, 968
MaeIII	GTNAC	2 cut(s)	485, 659
MalI	GATC	1 cut(s)	736
MboI	GATC	1 cut(s)	734
MboII	GAAGA	6 cut(s)	83, 213, 578, 689, 692, 797
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	470, 805
MluCI	AATT	7 cut(s)	339, 444, 603, 645, 699, 756, 993
MnlI	CCTC	7 cut(s)	55, 96, 153, 394, 717, 725, 844
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	4 cut(s)	95, 251, 482, 644
MspA1I	CMGCKG	2 cut(s)	164, 567
MspCI	CTTAAG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	134, 934
MwoI	GCNNNNNNNGC	5 cut(s)	333, 364, 542, 959, 983
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	1 cut(s)	734
NlaIII	CATG	6 cut(s)	59, 198, 243, 379, 741, 910
NlaIV	GGNNCC	3 cut(s)	504, 724, 987
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	585
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	2 cut(s)	134, 934
PfeI	GAWTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	7 cut(s)	163, 166, 326, 349, 520, 566, 961
PspN4I	GGNNCC	3 cut(s)	504, 724, 987
PspPI	GGNCC	3 cut(s)	527, 599, 985
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	49, 331
RsaNI	GTAC	2 cut(s)	48, 330
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	4 cut(s)	95, 251, 482, 644
SatI	GCNGC	7 cut(s)	162, 165, 325, 348, 519, 565, 960
Sau3AI	GATC	1 cut(s)	734
Sau96I	GGNCC	3 cut(s)	527, 599, 985
SduI	GDGCHC	2 cut(s)	470, 805
SfaNI	GCATC	3 cut(s)	570, 592, 623
SfcI	CTRYAG	3 cut(s)	150, 540, 655
SinI	GGWCC	2 cut(s)	527, 599
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SpeI	ACTAGT	1 cut(s)	967
Sse9I	AATT	7 cut(s)	339, 444, 603, 645, 699, 756, 993
SsiI	CCGC	3 cut(s)	38, 415, 567
SspI	AATATT	2 cut(s)	423, 903
SspMI	CTAG	2 cut(s)	776, 968
StyI	CCWWGG	3 cut(s)	55, 490, 1004
TaaI	ACNGT	3 cut(s)	151, 768, 923
TaqI	TCGA	2 cut(s)	273, 836
TasI	AATT	7 cut(s)	339, 444, 603, 645, 699, 756, 993
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	4 cut(s)	95, 251, 482, 644
Tru9I	TTAA	4 cut(s)	95, 251, 482, 644
TscAI	CASTG	4 cut(s)	154, 470, 601, 852
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	7 cut(s)	161, 164, 324, 347, 518, 564, 959
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	6 cut(s)	127, 180, 364, 656, 895, 1008
TspRI	CASTG	4 cut(s)	154, 470, 601, 852
Van91I	CCANNNNNTGG	1 cut(s)	496
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	527, 599
XapI	RAATTY	1 cut(s)	699
XspI	CTAG	2 cut(s)	776, 968
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.