AT1G60960

Zinc transporter 4

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22445299 .. 22447299
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60960.1

Sequence Viewer

Length: 1278 bp
ATGTTCTTCGTCGATGTTCTTTGGAAACTGGTTCCTCTATACTTGTTCGGATCAGAAACAAAGTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCTGAGGCAATGGCTGCTACTTCATCTAACGTCCTTTGCAATGCTAGCGAGTCAGATCTTTGTCGTGATGATTCCGCTGCATTTCTACTTAAATTTGTAGCCATTGCTTCGATTCTCTTAGCTGGAGCTGCTGGTGTAACTATACCACTCATTGGCAGGAACCGTCGTTTCCTTCAAACTGATGGTAATCTCTTTGTGACTGCTAAAGCTTTTGCAGCTGGTGTGATTCTCGCCACGGGTTTTGTTCATATGTTGGCGGGTGGCACGGAAGCTTTGAAGAACCCGTGCTTACCGGATTTCCCTTGGTCTAAGTTTCCTTTCCCGGGATTCTTTGCGATGATTGCTGCTTTGATCACTCTGTTTGTGGATTTCATGGGGACTCAGTACTATGAACGGAAGCAAGAGAGGGAAGCTAGTGAGTCTGTTGAACCGTTTGGCCGTGAACAATCACCGGGTATTGTTGTTCCCATGATTGGAGAAGGAACGAATGATGGGAAAGTGTTTGGTGAAGAAGACAGTGGTGGGATTCACATTGTTGGCATTCATGCTCATGCTGCTCATCATAGACATAGTCATCCTCCTGGTCATGATTCATGTGAAGGACACAGTAAAATCGACATTGGTCATGCTCATGCTCATGGGCACGGGCATGGACACGGACATGGACACGTACACGGGGGTTTGGATGCTGTTAATGGAGCTAGGCATATCGTTGTTTCTCAGGTTCTGGAGCTTGGAATTGTGTCACATTCCATAATCATCGGTCTATCCCTTGGAGTATCTCAGTCTCCTTGCACAATCCGGCCTCTAATCGCAGCACTATCCTTCCATCAATTCTTTGAAGGATTTGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCAGCGACCATAATGGCTTGTTTTTTCGCCCTCACAACCCCGATAGGGATCGGGATTGGAACCGCAGTGGCGTCGTCTTTCAATTCTCACAGTGTCGGAGCATTGGTCACTGAAGGTATCTTGGACTCGCTCTCAGCCGGAATTCTTGTGTACATGGCTTTAGTGGATCTCATAGCTGCTGATTTCTTGAGTACAAAAATGAGGTGTAACTTTAGGCTTCAAATTGTATCTTATGTAATGTTGTTCCTAGGAGCTGGACTCATGTCTTCTCTTGCCATTTGGGCTTAA

Protein Analysis

425

Amino Acids

45.09

Weight (kDa)

6.19

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 62 - 422 1.9e-81 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 3 cut(s) 174, 356, 1053
AclWI GGATC 3 cut(s) 58, 1046, 1164
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 2 cut(s) 191, 1131
AcuI CTGAAG 1 cut(s) 1122
AcyI GRCGYC 1 cut(s) 1061
AfaI GTAC 4 cut(s) 485, 771, 1142, 1183
AfiI CCNNNNNNNGG 4 cut(s) 251, 422, 572, 1035
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 6 cut(s) 275, 376, 527, 941, 1072, 1211
AjnI CCWGG 1 cut(s) 679
Alw26I GTCTC 2 cut(s) 69, 891
AlwI GGATC 3 cut(s) 58, 1046, 1164
AlwNI CAGNNNCTG 1 cut(s) 826
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 2 cut(s) 535, 902
ApeKI GCWGC 8 cut(s) 113, 176, 227, 314, 443, 653, 914, 1166
ApoI RAATTY 2 cut(s) 191, 1131
AspA2I CCTAGG 1 cut(s) 1237
AspLEI GCGC 2 cut(s) 952, 976
AsuC2I CCSGG 3 cut(s) 422, 423, 552
AsuHPI GGTGA 2 cut(s) 540, 617
AsuNHI GCTAGC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 421
AvrII CCTAGG 1 cut(s) 1237
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 744
BbsI GAAGAC 2 cut(s) 618, 1248
BbvI GCAGC 8 cut(s) 100, 163, 214, 326, 430, 640, 926, 1153
BccI CCATC 3 cut(s) 275, 584, 936
BceAI ACGGC 1 cut(s) 522
BcgI CGANNNNNNTGC 2 cut(s) 1044, 1078
BciT130I CCWGG 1 cut(s) 681
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 3 cut(s) 422, 423, 552
BcoDI GTCTC 2 cut(s) 69, 891
BfaI CTAG 4 cut(s) 144, 513, 801, 1238
BglI GCCNNNNNGGC 1 cut(s) 1271
BglII AGATCT 1 cut(s) 154
BisI GCNGC 8 cut(s) 114, 177, 228, 315, 444, 654, 915, 1167
BlnI CCTAGG 1 cut(s) 1237
BlsI GCNGC 8 cut(s) 115, 178, 229, 316, 445, 655, 916, 1168
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 4 cut(s) 422, 423, 552, 681
BmeT110I CYCGRG 1 cut(s) 421
BmiI GGNNCC 3 cut(s) 33, 260, 1051
BmrFI CCNGG 4 cut(s) 422, 423, 552, 681
BmsI GCATC 3 cut(s) 775, 950, 972
BmtI GCTAGC 1 cut(s) 147
BoxI GACNNNNGTC 2 cut(s) 720, 1252
BpiI GAAGAC 2 cut(s) 618, 1248
BplI GAGNNNNNCTC 2 cut(s) 1233, 1265
BpmI CTGGAG 2 cut(s) 243, 848
BpuEI CTTGAG 1 cut(s) 1198
BpuMI CCSGG 3 cut(s) 422, 423, 552
BsaAI YACGTR 1 cut(s) 769
BsaBI GATNNNNATC 2 cut(s) 285, 1037
BsaHI GRCGYC 1 cut(s) 1061
BsaJI CCNNGG 5 cut(s) 333, 401, 421, 871, 1237
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 1080, 1110
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 422, 572, 1035
Bse1I ACTGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 3 cut(s) 114, 145, 201
Bse8I GATNNNNATC 2 cut(s) 285, 1037
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 5 cut(s) 333, 401, 421, 871, 1237
BseGI GGATG 3 cut(s) 673, 790, 965
BseJI GATNNNNATC 2 cut(s) 285, 1037
BseLI CCNNNNNNNGG 4 cut(s) 251, 422, 572, 1035
BseMI GCAATG 3 cut(s) 114, 145, 201
BseMII CTCAG 6 cut(s) 84, 93, 494, 833, 896, 1137
BseNI ACTGG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 744
BseXI GCAGC 8 cut(s) 100, 163, 214, 326, 430, 640, 926, 1153
BshFI GGCC 2 cut(s) 537, 904
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 5 cut(s) 392, 422, 551, 901, 1128
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 4 cut(s) 251, 422, 572, 1035
BsmAI GTCTC 2 cut(s) 69, 891
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 2 cut(s) 537, 904
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 744
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 5 cut(s) 50, 154, 450, 1038, 1156
BspACI CCGC 3 cut(s) 174, 356, 1053
BspANI GGCC 2 cut(s) 537, 904
BspCNI CTCAG 6 cut(s) 83, 94, 493, 832, 895, 1136
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 3 cut(s) 33, 260, 1051
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 3 cut(s) 58, 1046, 1164
BsrDI GCAATG 3 cut(s) 114, 145, 201
BsrGI TGTACA 1 cut(s) 1140
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 5 cut(s) 333, 401, 421, 871, 1237
BssMI GATC 5 cut(s) 50, 154, 450, 1038, 1156
BssNI GRCGYC 1 cut(s) 1061
BssT1I CCWWGG 3 cut(s) 401, 871, 1237
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 5 cut(s) 263, 531, 617, 707, 1082
BstACI GRCGYC 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 1140
BstBAI YACGTR 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 8 cut(s) 70, 102, 217, 408, 480, 819, 882, 1123
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 673, 790, 965
BstHHI GCGC 2 cut(s) 952, 976
BstKTI GATC 5 cut(s) 53, 157, 453, 1041, 1159
BstMAI GTCTC 2 cut(s) 69, 891
BstMBI GATC 5 cut(s) 50, 154, 450, 1038, 1156
BstMWI GCNNNNNNNGC 7 cut(s) 113, 144, 227, 314, 440, 653, 1271
BstNI CCWGG 1 cut(s) 681
BstPAI GACNNNNGTC 2 cut(s) 720, 1252
BstSCI CCNGG 4 cut(s) 420, 421, 550, 679
BstSLI GKGCMC 1 cut(s) 744
BstV1I GCAGC 8 cut(s) 100, 163, 214, 326, 430, 640, 926, 1153
BstV2I GAAGAC 2 cut(s) 618, 1248
BstX2I RGATCY 2 cut(s) 154, 1156
BstYI RGATCY 2 cut(s) 154, 1156
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 2 cut(s) 537, 904
BtgI CCRYGG 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 449
BtsCI GGATG 3 cut(s) 673, 790, 965
BtsI GCAGTG 1 cut(s) 1062
BtsIMutI CAGTG 4 cut(s) 622, 1062, 1087, 1098
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 826
CciI TCATGA 1 cut(s) 685
CfoI GCGC 2 cut(s) 952, 976
Cfr9I CCCGGG 1 cut(s) 421
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 4 cut(s) 484, 770, 1141, 1182
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviQI GTAC 4 cut(s) 484, 770, 1141, 1182
DdeI CTNAG 8 cut(s) 70, 102, 217, 408, 480, 819, 882, 1123
DpnI GATC 5 cut(s) 52, 156, 452, 1040, 1158
DpnII GATC 5 cut(s) 50, 154, 450, 1038, 1156
EaeI YGGCCR 1 cut(s) 535
Eco130I CCWWGG 3 cut(s) 401, 871, 1237
Eco57I CTGAAG 1 cut(s) 1122
Eco81I CCTNAGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 421
EcoRI GAATTC 1 cut(s) 1131
EcoRII CCWGG 1 cut(s) 679
EcoT14I CCWWGG 3 cut(s) 401, 871, 1237
EcoT22I ATGCAT 1 cut(s) 965
ErhI CCWWGG 3 cut(s) 401, 871, 1237
FaqI GGGAC 1 cut(s) 490
FauI CCCGC 1 cut(s) 349
FauNDI CATATG 1 cut(s) 348
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 8 cut(s) 114, 177, 228, 315, 444, 654, 915, 1167
FokI GGATG 3 cut(s) 660, 797, 972
Fsp4HI GCNGC 8 cut(s) 114, 177, 228, 315, 444, 654, 915, 1167
FspBI CTAG 4 cut(s) 144, 513, 801, 1238
GlaI GCGC 2 cut(s) 951, 975
GluI GCNGC 8 cut(s) 114, 177, 228, 315, 444, 654, 915, 1167
GsuI CTGGAG 2 cut(s) 243, 848
HaeIII GGCC 2 cut(s) 537, 904
HapII CCGG 5 cut(s) 392, 422, 551, 901, 1128
HgaI GACGC 1 cut(s) 1050
HhaI GCGC 2 cut(s) 952, 976
Hin1I GRCGYC 1 cut(s) 1061
Hin6I GCGC 2 cut(s) 950, 974
HinP1I GCGC 2 cut(s) 950, 974
HindIII AAGCTT 2 cut(s) 306, 369
HpaII CCGG 5 cut(s) 392, 422, 551, 901, 1128
HphI GGTGA 2 cut(s) 540, 617
Hpy166II GTNNAC 3 cut(s) 542, 772, 1141
Hpy188I TCNGA 4 cut(s) 50, 55, 154, 1088
Hpy188III TCNNGA 7 cut(s) 101, 164, 686, 827, 982, 1042, 1177
Hpy8I GTNNAC 3 cut(s) 542, 772, 1141
Hpy99I CGWCG 3 cut(s) 14, 267, 1066
HpyAV CCTTC 6 cut(s) 281, 572, 692, 934, 935, 1097
HpyCH4III ACNGT 5 cut(s) 263, 531, 617, 707, 1082
HpyCH4IV ACGT 2 cut(s) 129, 768
HpyCH4V TGCA 6 cut(s) 91, 138, 179, 314, 894, 963
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 144, 227, 314, 440, 653, 1271
HpyF3I CTNAG 8 cut(s) 70, 102, 217, 408, 480, 819, 882, 1123
HpySE526I ACGT 2 cut(s) 129, 768
Hsp92I GRCGYC 1 cut(s) 1061
HspAI GCGC 2 cut(s) 950, 974
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 5 cut(s) 50, 154, 450, 1038, 1156
LmnI GCTCC 5 cut(s) 224, 797, 829, 1088, 1241
Lsp1109I GCAGC 8 cut(s) 100, 163, 214, 326, 430, 640, 926, 1153
LweI GCATC 3 cut(s) 775, 950, 972
MaeI CTAG 4 cut(s) 144, 513, 801, 1238
MaeII ACGT 2 cut(s) 129, 768
MaeIII GTNAC 5 cut(s) 235, 295, 843, 1096, 1196
MalI GATC 5 cut(s) 52, 156, 452, 1040, 1158
MboI GATC 5 cut(s) 50, 154, 450, 1038, 1156
MboII GAAGA 4 cut(s) 388, 620, 623, 1248
MflI RGATCY 2 cut(s) 154, 1156
MhlI GDGCHC 1 cut(s) 744
MluCI AATT 7 cut(s) 191, 837, 932, 977, 1072, 1131, 1212
MlyI GAGTC 6 cut(s) 89, 158, 472, 527, 1109, 1242
MmeI TCCRAC 1 cut(s) 1066
MnlI CCTC 7 cut(s) 45, 97, 498, 687, 915, 1031, 1185
Mph1103I ATGCAT 1 cut(s) 965
MseI TTAA 3 cut(s) 189, 792, 1276
MslI CAYNNNNRTG 5 cut(s) 648, 729, 735, 747, 759
MspA1I CMGCKG 2 cut(s) 176, 317
MspI CCGG 5 cut(s) 392, 422, 551, 901, 1128
MspR9I CCNGG 4 cut(s) 422, 423, 552, 681
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 1 cut(s) 681
MwoI GCNNNNNNNGC 7 cut(s) 113, 144, 227, 314, 440, 653, 1271
NciI CCSGG 3 cut(s) 422, 423, 552
NdeI CATATG 1 cut(s) 348
NdeII GATC 5 cut(s) 50, 154, 450, 1038, 1156
NheI GCTAGC 1 cut(s) 143
NlaIV GGNNCC 3 cut(s) 33, 260, 1051
NmuCI GTSAC 3 cut(s) 295, 843, 1096
NsiI ATGCAT 1 cut(s) 965
PagI TCATGA 1 cut(s) 685
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 6 cut(s) 170, 211, 325, 426, 625, 689
PflFI GACNNNGTC 1 cut(s) 669
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 8 cut(s) 115, 178, 229, 316, 445, 655, 916, 1168
PleI GAGTC 6 cut(s) 88, 157, 472, 526, 1109, 1242
PpsI GAGTC 6 cut(s) 88, 157, 472, 526, 1109, 1242
Ppu21I YACGTR 1 cut(s) 769
PshAI GACNNNNGTC 2 cut(s) 720, 1252
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 3 cut(s) 33, 260, 1051
PstNI CAGNNNCTG 1 cut(s) 826
PsuI RGATCY 2 cut(s) 154, 1156
PsyI GACNNNGTC 1 cut(s) 669
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 4 cut(s) 485, 771, 1142, 1183
RsaNI GTAC 4 cut(s) 484, 770, 1141, 1182
RseI CAYNNNNRTG 5 cut(s) 648, 729, 735, 747, 759
SaqAI TTAA 3 cut(s) 189, 792, 1276
SatI GCNGC 8 cut(s) 114, 177, 228, 315, 444, 654, 915, 1167
Sau3AI GATC 5 cut(s) 50, 154, 450, 1038, 1156
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 6 cut(s) 89, 158, 472, 527, 1109, 1242
ScrFI CCNGG 4 cut(s) 422, 423, 552, 681
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 3 cut(s) 775, 950, 972
SmaI CCCGGG 1 cut(s) 423
SmiMI CAYNNNNRTG 5 cut(s) 648, 729, 735, 747, 759
SmlI CTYRAG 1 cut(s) 1177
SmoI CTYRAG 1 cut(s) 1177
Sse9I AATT 7 cut(s) 191, 837, 932, 977, 1072, 1131, 1212
SsiI CCGC 3 cut(s) 174, 356, 1053
SspMI CTAG 4 cut(s) 144, 513, 801, 1238
StyD4I CCNGG 4 cut(s) 420, 421, 550, 679
StyI CCWWGG 3 cut(s) 401, 871, 1237
TaaI ACNGT 5 cut(s) 263, 531, 617, 707, 1082
TaiI ACGT 2 cut(s) 132, 771
TaqI TCGA 3 cut(s) 12, 209, 714
TaqII GACCGA 1 cut(s) 851
TasI AATT 7 cut(s) 191, 837, 932, 977, 1072, 1131, 1212
TatI WGTACW 3 cut(s) 483, 1140, 1181
TfiI GAWTC 6 cut(s) 170, 211, 325, 426, 625, 689
Tru1I TTAA 3 cut(s) 189, 792, 1276
Tru9I TTAA 3 cut(s) 189, 792, 1276
TscAI CASTG 4 cut(s) 622, 1062, 1087, 1105
TseFI GTSAC 3 cut(s) 295, 843, 1096
TseI GCWGC 8 cut(s) 113, 176, 227, 314, 443, 653, 914, 1166
Tsp45I GTSAC 3 cut(s) 295, 843, 1096
TspDTI ATGAA 6 cut(s) 111, 335, 460, 504, 632, 681
TspGWI ACGGA 3 cut(s) 380, 508, 771
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 4 cut(s) 622, 1062, 1087, 1105
Tth111I GACNNNGTC 1 cut(s) 669
Van91I CCANNNNNTGG 1 cut(s) 251
XapI RAATTY 2 cut(s) 191, 1131
XmaI CCCGGG 1 cut(s) 421
XmaJI CCTAGG 1 cut(s) 1237
XspI CTAG 4 cut(s) 144, 513, 801, 1238
ZrmI AGTACT 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.