Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035061.1

Orthogroup ID

OG0004683

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1233

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 785 bp

atggccacctccgcctgcgacgccgccgagtcggattcctgccgggacgacgcggcggcgctcaatctcaagttcgtcgccatcgcttccattctcctcgccggagtgatcggaattgccattcctctggtcgggaagaaccggcgggttctccgcacggacggcagcctcttcgtcggagccaaagccttcgccgccggcgtcattctcgccaccggattcgtgcacatgctttccggcggttccgacgcgctgaacagcccgtgcctgccggagtttccgtggtccaagttccccttctctggattcttcgccatgatggcatcgcttgccaccttgctcgttgacttcgtgggcacccagtactacgagcgcaaacagggcctggcccggcccaccgaggaccaagttcgagtcgggtcggacgactcgggtctcgagtcgggtattgtctcggcccaaaaggactcgaatggcacgatttttggggaagaggaaggcggtgggatgcacattgtgggaatgcatgcccacgcggcgcaccatcgacacagccaccctcaggacgcatgcgacgggcacgtgaccgaaccgggtcacgttgattcgggtcacgcccacgggcatggccattcccacgggttcggtgatgatgacgaggatactggtgtccggcacgtcgtcgtttcacagattttggaactagggattgtgtcacattctgtgatcattgggttgtcactaggagtgtcacagagcccatgtaccataaggcccttagttgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

262

Amino Acids

27.32

Weight (kDa)

5.62

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10970 AT1G10970 AT1G60960 AT1G60960 AT1G60960 AT4G33020 AT4G33020
fragaria_vesca	FvH4_2g31850 FvH4_2g31850 FvH4_2g31850 FvH4_2g31850 FvH4_2g31850 FvH4_2g31850 FvH4_2g31850 FvH4_2g31850
malus_domestica	MD08G1061900.v1.1 MD15G1059800.v1.1
prunus_persica	Prupe.1G411700_v2.0.a1
pyrus_communis	pycom08g05140 pycom15g05610
rosa_chinensis	RchiOBHm_Chr6g0310941
rosa_laevigata	RLG00000010448
rosa_multiflora	Rmu_sc0035061.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158150
rosa_rugosa	Rorug06G0384300 Rorug06G0384400
rosa_samantha	Rh6AG498100 Rh6BG508500 Rh6CG514400 Rh6DG500900
rosa_wichuraiana	Rw6G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AccII	CGCG	3 cut(s)	53, 251, 536
AcoI	YGGCCR	2 cut(s)	3, 628
AcvI	CACGTG	1 cut(s)	583
AcyI	GRCGYC	2 cut(s)	21, 201
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	2 cut(s)	365, 766
AfiI	CCNNNNNNNGG	3 cut(s)	131, 302, 562
AjiI	CACGTC	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	384
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	440, 457
Alw44I	GTGCAC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	2 cut(s)	430, 437
AoxI	GGCC	7 cut(s)	3, 382, 387, 392, 456, 628, 773
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	4 cut(s)	61, 253, 375, 541
AspS9I	GGNCC	7 cut(s)	285, 382, 388, 393, 403, 457, 774
AsuC2I	CCSGG	3 cut(s)	44, 391, 594
AsuHPI	GGTGA	1 cut(s)	659
AvaI	CYCGRG	2 cut(s)	430, 437
AvaII	GGWCC	2 cut(s)	285, 403
AxyI	CCTNAGG	1 cut(s)	561
BaeGI	GKGCMC	3 cut(s)	228, 359, 582
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BalI	TGGCCA	2 cut(s)	5, 630
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	761
BbrPI	CACGTG	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	3 cut(s)	89, 313, 552
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	655
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	3 cut(s)	44, 391, 594
BcoDI	GTCTC	2 cut(s)	440, 457
BfaI	CTAG	2 cut(s)	704, 743
BfoI	RGCGCY	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	655
BglI	GCCNNNNNGGC	2 cut(s)	320, 536
BisI	GCNGC	6 cut(s)	24, 54, 57, 166, 195, 537
BlsI	GCNGC	6 cut(s)	25, 55, 58, 167, 196, 538
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	4 cut(s)	44, 386, 391, 594
Bme18I	GGWCC	2 cut(s)	285, 403
BmeT110I	CYCGRG	2 cut(s)	430, 437
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	7 cut(s)	285, 382, 388, 393, 403, 457, 774
BmiI	GGNNCC	3 cut(s)	181, 244, 358
BmrFI	CCNGG	4 cut(s)	44, 386, 391, 594
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	2 cut(s)	332, 498
BmuI	ACTGGG	1 cut(s)	355
BoxI	GACNNNNGTC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	3 cut(s)	44, 391, 594
BsaAI	YACGTR	1 cut(s)	583
BsaHI	GRCGYC	2 cut(s)	21, 201
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	4 cut(s)	281, 399, 619, 637
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 302, 562
Bse118I	RCCGGY	2 cut(s)	141, 197
Bse1I	ACTGG	2 cut(s)	361, 670
Bse21I	CCTNAGG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	281, 399, 619, 637
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	131, 302, 562
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	2 cut(s)	361, 670
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	3 cut(s)	228, 359, 582
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	3 cut(s)	53, 251, 536
BshFI	GGCC	7 cut(s)	5, 384, 389, 394, 458, 630, 775
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	2 cut(s)	430, 437
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	131, 302, 562
BsmAI	GTCTC	2 cut(s)	440, 457
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	7 cut(s)	5, 384, 389, 394, 458, 630, 775
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	2 cut(s)	430, 437
Bsp1286I	GDGCHC	4 cut(s)	228, 359, 582, 761
Bsp143I	GATC	2 cut(s)	108, 726
BspANI	GGCC	7 cut(s)	5, 384, 389, 394, 458, 630, 775
BspCNI	CTCAG	1 cut(s)	574
BspFNI	CGCG	3 cut(s)	53, 251, 536
BspLI	GGNNCC	3 cut(s)	181, 244, 358
BspT107I	GGYRCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	2 cut(s)	141, 197
BsrI	ACTGG	2 cut(s)	361, 670
BssAI	RCCGGY	2 cut(s)	141, 197
BssECI	CCNNGG	4 cut(s)	281, 399, 619, 637
BssMI	GATC	2 cut(s)	108, 726
BssNI	GRCGYC	2 cut(s)	21, 201
Bst2UI	CCWGG	1 cut(s)	386
Bst6I	CTCTTC	2 cut(s)	176, 486
BstACI	GRCGYC	2 cut(s)	21, 201
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	583
BstC8I	GCNNGC	6 cut(s)	16, 199, 269, 330, 528, 571
BstDEI	CTNAG	2 cut(s)	561, 778
BstDSI	CCRYGG	3 cut(s)	281, 619, 637
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	3 cut(s)	53, 251, 536
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	4 cut(s)	61, 253, 375, 541
BstKTI	GATC	2 cut(s)	111, 729
BstMAI	GTCTC	2 cut(s)	440, 457
BstMBI	GATC	2 cut(s)	108, 726
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 20, 162, 194, 320, 329, 381, 536
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	3 cut(s)	232, 530, 573
BstPAI	GACNNNNGTC	1 cut(s)	432
BstSCI	CCNGG	4 cut(s)	42, 384, 389, 592
BstSLI	GKGCMC	3 cut(s)	228, 359, 582
BstUI	CGCG	3 cut(s)	53, 251, 536
BstV1I	GCAGC	1 cut(s)	177
BstXI	CCANNNNNNTGG	2 cut(s)	127, 626
Bsu36I	CCTNAGG	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	7 cut(s)	5, 384, 389, 394, 458, 630, 775
BtgI	CCRYGG	3 cut(s)	281, 619, 637
BtgZI	GCGATG	2 cut(s)	67, 309
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	513
Cac8I	GCNNGC	6 cut(s)	16, 199, 269, 330, 528, 571
CaiI	CAGNNNCTG	1 cut(s)	385
CfoI	GCGC	4 cut(s)	61, 253, 375, 541
Cfr10I	RCCGGY	2 cut(s)	141, 197
Cfr13I	GGNCC	7 cut(s)	285, 382, 388, 393, 403, 457, 774
CseI	GACGC	5 cut(s)	29, 59, 190, 257, 575
Csp6I	GTAC	2 cut(s)	364, 765
CviAII	CATG	6 cut(s)	229, 316, 527, 570, 626, 762
CviQI	GTAC	2 cut(s)	364, 765
DdeI	CTNAG	2 cut(s)	561, 778
DpnI	GATC	2 cut(s)	110, 728
DpnII	GATC	2 cut(s)	108, 726
DraIII	CACNNNGTG	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	3, 628
Eam1104I	CTCTTC	2 cut(s)	176, 486
EarI	CTCTTC	2 cut(s)	176, 486
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	285, 403
Eco72I	CACGTG	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	430, 437
EcoO109I	RGGNCCY	2 cut(s)	382, 774
EcoRII	CCWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	761
FaeI	CATG	6 cut(s)	232, 319, 530, 573, 629, 765
FaiI	YATR	7 cut(s)	230, 317, 528, 571, 627, 763, 770
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	6 cut(s)	228, 315, 526, 569, 625, 761
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	6 cut(s)	24, 54, 57, 166, 195, 537
FokI	GGATG	1 cut(s)	520
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	6 cut(s)	24, 54, 57, 166, 195, 537
FspBI	CTAG	2 cut(s)	704, 743
GlaI	GCGC	4 cut(s)	60, 252, 374, 540
GluI	GCNGC	6 cut(s)	24, 54, 57, 166, 195, 537
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	7 cut(s)	5, 384, 389, 394, 458, 630, 775
HgaI	GACGC	5 cut(s)	29, 59, 190, 257, 575
HhaI	GCGC	4 cut(s)	61, 253, 375, 541
Hin1I	GRCGYC	2 cut(s)	21, 201
Hin1II	CATG	6 cut(s)	232, 319, 530, 573, 629, 765
Hin6I	GCGC	4 cut(s)	59, 251, 373, 539
HinP1I	GCGC	4 cut(s)	59, 251, 373, 539
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	9 cut(s)	29, 35, 219, 306, 414, 428, 440, 467, 605
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	226, 346
Hpy188I	TCNGA	5 cut(s)	34, 113, 179, 247, 424
Hpy188III	TCNNGA	4 cut(s)	133, 303, 437, 563
Hpy8I	GTNNAC	2 cut(s)	226, 346
Hpy99I	CGWCG	8 cut(s)	23, 53, 80, 179, 251, 578, 683, 686
HpyAV	CCTTC	3 cut(s)	199, 307, 491
HpyCH4IV	ACGT	3 cut(s)	582, 600, 678
HpyCH4V	TGCA	3 cut(s)	226, 511, 526
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 20, 162, 194, 320, 329, 381, 536
HpyF3I	CTNAG	2 cut(s)	561, 778
HpySE526I	ACGT	3 cut(s)	582, 600, 678
Hsp92I	GRCGYC	2 cut(s)	21, 201
Hsp92II	CATG	6 cut(s)	232, 319, 530, 573, 629, 765
HspAI	GCGC	4 cut(s)	59, 251, 373, 539
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	108, 726
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	2 cut(s)	332, 498
MaeI	CTAG	2 cut(s)	704, 743
MaeII	ACGT	3 cut(s)	582, 600, 678
MaeIII	GTNAC	6 cut(s)	583, 596, 611, 714, 738, 750
MalI	GATC	2 cut(s)	110, 728
MboI	GATC	2 cut(s)	108, 726
MboII	GAAGA	4 cut(s)	148, 163, 301, 503
MhlI	GDGCHC	4 cut(s)	228, 359, 582, 761
MlsI	TGGCCA	2 cut(s)	5, 630
MluCI	AATT	1 cut(s)	114
MluNI	TGGCCA	2 cut(s)	5, 630
MlyI	GAGTC	5 cut(s)	38, 422, 423, 449, 461
MmeI	TCCRAC	4 cut(s)	12, 157, 270, 402
MnlI	CCTC	8 cut(s)	19, 107, 135, 179, 394, 487, 570, 652
Mox20I	TGGCCA	2 cut(s)	5, 630
Mph1103I	ATGCAT	1 cut(s)	528
MreI	CGCCGGCG	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	197
MscI	TGGCCA	2 cut(s)	5, 630
MslI	CAYNNNNRTG	1 cut(s)	624
Msp20I	TGGCCA	2 cut(s)	5, 630
MspR9I	CCNGG	4 cut(s)	44, 386, 391, 594
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	3 cut(s)	53, 251, 536
MwoI	GCNNNNNNNGC	8 cut(s)	11, 20, 162, 194, 320, 329, 381, 536
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	3 cut(s)	44, 391, 594
NdeII	GATC	2 cut(s)	108, 726
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	6 cut(s)	232, 319, 530, 573, 629, 765
NlaIV	GGNNCC	3 cut(s)	181, 244, 358
NmeAIII	GCCGAG	2 cut(s)	52, 434
NmuCI	GTSAC	6 cut(s)	583, 596, 611, 714, 738, 750
NsiI	ATGCAT	1 cut(s)	528
NspI	RCATGY	3 cut(s)	232, 530, 573
PaeI	GCATGC	2 cut(s)	530, 573
PaeR7I	CTCGAG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 348, 423, 476
PctI	GAATGC	1 cut(s)	528
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	35, 219, 306, 605
PkrI	GCNGC	6 cut(s)	25, 55, 58, 167, 196, 538
PleI	GAGTC	5 cut(s)	37, 422, 422, 448, 461
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	5 cut(s)	37, 422, 422, 448, 461
Ppu21I	YACGTR	1 cut(s)	583
PshAI	GACNNNNGTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	181, 244, 358
PspPI	GGNCC	7 cut(s)	285, 382, 388, 393, 403, 457, 774
PstNI	CAGNNNCTG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	365, 766
RsaNI	GTAC	2 cut(s)	364, 765
RseI	CAYNNNNRTG	1 cut(s)	624
SatI	GCNGC	6 cut(s)	24, 54, 57, 166, 195, 537
Sau3AI	GATC	2 cut(s)	108, 726
Sau96I	GGNCC	7 cut(s)	285, 382, 388, 393, 403, 457, 774
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	5 cut(s)	38, 422, 423, 449, 461
ScrFI	CCNGG	4 cut(s)	44, 386, 391, 594
SduI	GDGCHC	4 cut(s)	228, 359, 582, 761
SetI	ASST	5 cut(s)	11, 338, 585, 603, 681
SfaNI	GCATC	2 cut(s)	332, 498
Sfr274I	CTCGAG	1 cut(s)	437
SgrAI	CRCCGGYG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	285, 403
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	2 cut(s)	68, 437
SmoI	CTYRAG	2 cut(s)	68, 437
SphI	GCATGC	2 cut(s)	530, 573
Sse9I	AATT	1 cut(s)	114
SspMI	CTAG	2 cut(s)	704, 743
StyD4I	CCNGG	4 cut(s)	42, 384, 389, 592
TaiI	ACGT	3 cut(s)	585, 603, 681
TaqI	TCGA	4 cut(s)	412, 438, 470, 547
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	5 cut(s)	26, 56, 59, 197, 539
TfiI	GAWTC	4 cut(s)	35, 219, 306, 605
TseFI	GTSAC	6 cut(s)	583, 596, 611, 714, 738, 750
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	6 cut(s)	583, 596, 611, 714, 738, 750
TspGWI	ACGGA	2 cut(s)	173, 270
VneI	GTGCAC	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	285, 403
XceI	RCATGY	3 cut(s)	232, 530, 573
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	2 cut(s)	704, 743
ZrmI	AGTACT	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.