MD08G1061900.v1.1

Zinc transporter 4

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
4892316 .. 4895457
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1061900.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGTCATTCGTTGAGGATCTTTGGCCCTGGCTCAGCCCTCCAGGTTTCCTAGAAAAATCTCGGCTTTTCAAAGAGTCCCTTTTGCAGTCCATGGCCAACACGAGCTGCGGGAGCGCGGAGATCGAGGCCTGCCGCAACGAGTCGTCGGCTTTCGTCCTCAAGCTAATCGCTGTCGCTTCGATTCTCCTGGCCGGAGTCGTCGGAGTCGCAATTCCCCTCGTCGGTAAGAACCGCAGCTTTCTCCGCACCGACGGTAGCCTCTTCGTTGCCGCCAAGGCCTTCGCCGCCGGGGTAATTCTTGCCACCGGGTTTGTCCACATGCTCCCGGACGGGTCGGCCGCCCTGAACGACCCGTGCCTGCCGGAATACCCCTGGACCAAGTTCCCCTTCTCGGGATTTTTCGCCATGATGGCCTCGCTTGCCACGTTGCTCGTCGACTTTGTTGGGACCCAGTATTACGAGAGGAAACAGGGGAAGACTCGCCCCGCCGAGGACCAGGTGCGGGTCGCGTCGGATGACCCGGAGATTGAGGCGGGTACGGGTCCCGAACATCCGGCGAGGGAGTTGAATGGGAAGGTGTTTGGGGAAGAGGAAGGCGGTGGGATGCACATTGTTGGGATGCATGCGCACGCGGCGCACCACGGACACAGCCACGCGCACGGCCAGGCCGGATGTGATGGGCACGTGACGAGGGAATCCGAACCGGAACACGGGCACGATTCGCACGGGCACGGGCATGGGCATTCTCACGGGTTCGGGGATGATGACGAGGACGGTGGTGTCCGCCACGTGGTCGTTTCTCAGATTTTGGAACTTGGGATTGTATCACATTCAGTGATCATAGGCCTATCACTGGGAGTTTCACAGAGCCCATGCACCATAAGACCCTTGGTTGCAGCATTGTCATTCCATCAGTTCTTTGAAGGTTTTGCACTTGGAGGCTGCATATCTCAAGCCCAATTCAAGACCCTAGCAACAACCCTAATGGCCTGTTTTTTCGCCGTCACAACCCCGCTTGGGATAGGCGTTGGGATCGCCATTTCTTCGTTCTACAACCCGGACAGTGCGGGAGCTTTGGTCACCGAGGGCATCTTGGATTCCATGTCCGCCGGAATTCTAGTGTACATGGCGTTGGTTGACCTAATTGCTGCTGATTTTTTGAGTAAGAGGATGAGCTGCAATTTCAGGCTTCAACTTGTATCTTATTGCTGTCTCTTTGTTGGAGCTGGATTGATGTCATTACTTGCAATTTGGGCTTAA

Protein Analysis

420

Amino Acids

44.46

Weight (kDa)

5.59

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 53 - 416 2.8e-81 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc16I TGCGCA 1 cut(s) 627
AccI GTMKAC 1 cut(s) 435
AccII CGCG 4 cut(s) 116, 509, 632, 656
AclWI GGATC 2 cut(s) 24, 1040
AcoI YGGCCR 4 cut(s) 93, 189, 336, 661
AcsI RAATTY 1 cut(s) 1113
AcvI CACGTG 2 cut(s) 685, 790
AfaI GTAC 2 cut(s) 538, 1124
AfiI CCNNNNNNNGG 9 cut(s) 221, 391, 392, 490, 502, 710, 790, 853, 1017
AgsI TTSAA 5 cut(s) 70, 568, 923, 964, 1193
AjnI CCWGG 6 cut(s) 26, 40, 186, 371, 495, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 6 cut(s) 105, 163, 237, 1073, 1176, 1226
AluI AGCT 6 cut(s) 105, 163, 237, 1073, 1176, 1226
Alw26I GTCTC 1 cut(s) 1217
AlwI GGATC 2 cut(s) 24, 1040
Ama87I CYCGRG 1 cut(s) 391
ApeKI GCWGC 6 cut(s) 105, 234, 896, 942, 1148, 1176
ApoI RAATTY 1 cut(s) 1113
AspLEI GCGC 4 cut(s) 116, 628, 637, 658
AspS9I GGNCC 5 cut(s) 24, 375, 447, 493, 542
AsuC2I CCSGG 5 cut(s) 289, 307, 326, 521, 1058
AsuHPI GGTGA 1 cut(s) 1072
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 4 cut(s) 375, 447, 493, 542
BaeGI GKGCMC 3 cut(s) 684, 717, 732
BalI TGGCCA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 872
BauI CACGAG 1 cut(s) 100
BbrPI CACGTG 2 cut(s) 685, 790
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 6 cut(s) 92, 246, 908, 929, 1135, 1163
BccI CCATC 3 cut(s) 403, 671, 918
BceAI ACGGC 2 cut(s) 676, 986
BciT130I CCWGG 6 cut(s) 28, 42, 188, 373, 497, 665
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 5 cut(s) 289, 307, 326, 521, 1058
BcoDI GTCTC 1 cut(s) 1217
BfaI CTAG 3 cut(s) 50, 971, 1118
BglI GCCNNNNNGGC 2 cut(s) 275, 410
BlpI GCTNAGC 1 cut(s) 32
Bme18I GGWCC 4 cut(s) 375, 447, 493, 542
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 5 cut(s) 24, 375, 447, 493, 542
BmiI GGNNCC 4 cut(s) 448, 449, 543, 544
BmrI ACTGGG 2 cut(s) 445, 863
BmsI GCATC 3 cut(s) 594, 609, 1098
BmuI ACTGGG 2 cut(s) 445, 863
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 143, 936
BpuMI CCSGG 5 cut(s) 289, 307, 326, 521, 1058
BsaAI YACGTR 2 cut(s) 685, 790
BsaJI CCNNGG 9 cut(s) 26, 90, 273, 288, 371, 489, 640, 888, 1083
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 9 cut(s) 221, 391, 392, 490, 502, 710, 790, 853, 1017
Bse1I ACTGG 2 cut(s) 451, 858
BseBI CCWGG 6 cut(s) 28, 42, 188, 373, 497, 665
BseDI CCNNGG 9 cut(s) 26, 90, 273, 288, 371, 489, 640, 888, 1083
BseGI GGATG 7 cut(s) 520, 550, 609, 624, 677, 766, 1176
BseLI CCNNNNNNNGG 9 cut(s) 221, 391, 392, 490, 502, 710, 790, 853, 1017
BseMII CTCAG 2 cut(s) 46, 815
BseNI ACTGG 2 cut(s) 451, 858
BseSI GKGCMC 3 cut(s) 684, 717, 732
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 6 cut(s) 92, 246, 908, 929, 1135, 1163
Bsh1236I CGCG 4 cut(s) 116, 509, 632, 656
Bsh1285I CGRYCG 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 391
BslFI GGGAC 3 cut(s) 61, 460, 528
BslI CCNNNNNNNGG 9 cut(s) 221, 391, 392, 490, 502, 710, 790, 853, 1017
BsmAI GTCTC 1 cut(s) 1217
BsmFI GGGAC 3 cut(s) 61, 460, 528
BsmI GAATGC 1 cut(s) 742
BsoBI CYCGRG 1 cut(s) 391
Bsp1286I GDGCHC 4 cut(s) 684, 717, 732, 872
Bsp1407I TGTACA 1 cut(s) 1122
Bsp143I GATC 4 cut(s) 16, 120, 837, 1032
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 45, 814
BspFNI CGCG 4 cut(s) 116, 509, 632, 656
BspLI GGNNCC 4 cut(s) 448, 449, 543, 544
BspPI GGATC 2 cut(s) 24, 1040
BsrGI TGTACA 1 cut(s) 1122
BsrI ACTGG 2 cut(s) 451, 858
BssECI CCNNGG 9 cut(s) 26, 90, 273, 288, 371, 489, 640, 888, 1083
BssMI GATC 4 cut(s) 16, 120, 837, 1032
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 3 cut(s) 90, 273, 888
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 6 cut(s) 28, 42, 188, 373, 497, 665
Bst4CI ACNGT 3 cut(s) 254, 776, 1064
Bst6I CTCTTC 2 cut(s) 266, 582
BstAUI TGTACA 1 cut(s) 1122
BstBAI YACGTR 2 cut(s) 685, 790
BstC8I GCNNGC 5 cut(s) 130, 359, 420, 624, 630
BstDEI CTNAG 2 cut(s) 32, 801
BstDSI CCRYGG 2 cut(s) 90, 640
BstEII GGTNACC 1 cut(s) 1078
BstF5I GGATG 7 cut(s) 520, 550, 609, 624, 677, 766, 1176
BstFNI CGCG 4 cut(s) 116, 509, 632, 656
BstHHI GCGC 4 cut(s) 116, 628, 637, 658
BstKTI GATC 4 cut(s) 19, 123, 840, 1035
BstMAI GTCTC 1 cut(s) 1217
BstMBI GATC 4 cut(s) 16, 120, 837, 1032
BstMCI CGRYCG 1 cut(s) 339
BstNI CCWGG 6 cut(s) 28, 42, 188, 373, 497, 665
BstNSI RCATGY 2 cut(s) 322, 626
BstPI GGTNACC 1 cut(s) 1078
BstSLI GKGCMC 3 cut(s) 684, 717, 732
BstUI CGCG 4 cut(s) 116, 509, 632, 656
BstV1I GCAGC 6 cut(s) 92, 246, 908, 929, 1135, 1163
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BstZI CGGCCG 1 cut(s) 336
BtgI CCRYGG 2 cut(s) 90, 640
BtsCI GGATG 7 cut(s) 520, 550, 609, 624, 677, 766, 1176
BtsIMutI CAGTG 3 cut(s) 840, 851, 1069
Cac8I GCNNGC 5 cut(s) 130, 359, 420, 624, 630
CfoI GCGC 4 cut(s) 116, 628, 637, 658
Cfr13I GGNCC 5 cut(s) 24, 375, 447, 493, 542
CseI GACGC 1 cut(s) 498
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 2 cut(s) 537, 1123
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 8 cut(s) 91, 319, 406, 623, 737, 873, 1102, 1126
CviQI GTAC 2 cut(s) 537, 1123
DdeI CTNAG 2 cut(s) 32, 801
DpnI GATC 4 cut(s) 18, 122, 839, 1034
DpnII GATC 4 cut(s) 16, 120, 837, 1032
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 4 cut(s) 93, 189, 336, 661
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 266, 582
EarI CTCTTC 2 cut(s) 266, 582
EciI GGCGGA 2 cut(s) 773, 1096
EclXI CGGCCG 1 cut(s) 336
Eco130I CCWWGG 3 cut(s) 90, 273, 888
Eco147I AGGCCT 3 cut(s) 128, 278, 846
Eco24I GRGCYC 1 cut(s) 872
Eco47I GGWCC 4 cut(s) 375, 447, 493, 542
Eco52I CGGCCG 1 cut(s) 336
Eco72I CACGTG 2 cut(s) 685, 790
Eco88I CYCGRG 1 cut(s) 391
Eco91I GGTNACC 1 cut(s) 1078
EcoO109I RGGNCCY 2 cut(s) 447, 542
EcoO65I GGTNACC 1 cut(s) 1078
EcoRI GAATTC 1 cut(s) 1113
EcoRII CCWGG 6 cut(s) 26, 40, 186, 371, 495, 663
EcoT14I CCWWGG 3 cut(s) 90, 273, 888
EcoT22I ATGCAT 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 872
ErhI CCWWGG 3 cut(s) 90, 273, 888
FaeI CATG 8 cut(s) 94, 322, 409, 626, 740, 876, 1105, 1129
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 371, 403
FaqI GGGAC 3 cut(s) 61, 460, 528
FatI CATG 8 cut(s) 90, 318, 405, 622, 736, 872, 1101, 1125
FauI CCCGC 6 cut(s) 101, 493, 495, 526, 1020, 1060
FbaI TGATCA 1 cut(s) 837
FblI GTMKAC 1 cut(s) 435
FokI GGATG 7 cut(s) 527, 537, 616, 631, 684, 773, 1183
FriOI GRGCYC 1 cut(s) 872
FspAI RTGCGCAY 1 cut(s) 627
FspBI CTAG 3 cut(s) 50, 971, 1118
FspI TGCGCA 1 cut(s) 627
GlaI GCGC 4 cut(s) 115, 627, 636, 657
GsuI CTGGAG 1 cut(s) 24
HgaI GACGC 1 cut(s) 498
HhaI GCGC 4 cut(s) 116, 628, 637, 658
Hin1II CATG 8 cut(s) 94, 322, 409, 626, 740, 876, 1105, 1129
Hin6I GCGC 4 cut(s) 114, 626, 635, 656
HinP1I GCGC 4 cut(s) 114, 626, 635, 656
HincII GTYRAC 2 cut(s) 436, 1138
HindII GTYRAC 2 cut(s) 436, 1138
HinfI GANTC 9 cut(s) 74, 140, 181, 195, 204, 478, 695, 719, 1097
HphI GGTGA 1 cut(s) 1072
Hpy166II GTNNAC 4 cut(s) 316, 436, 1123, 1138
Hpy188I TCNGA 4 cut(s) 203, 514, 700, 804
Hpy188III TCNNGA 3 cut(s) 393, 545, 964
Hpy8I GTNNAC 4 cut(s) 316, 436, 1123, 1138
Hpy99I CGWCG 6 cut(s) 148, 203, 224, 254, 437, 514
HpyAV CCTTC 5 cut(s) 289, 397, 568, 587, 917
HpyCH4III ACNGT 3 cut(s) 254, 776, 1064
HpyCH4IV ACGT 3 cut(s) 425, 684, 789
HpyCH4V TGCA 9 cut(s) 85, 607, 622, 876, 896, 932, 945, 1179, 1247
HpyF3I CTNAG 2 cut(s) 32, 801
HpySE526I ACGT 3 cut(s) 425, 684, 789
Hsp92II CATG 8 cut(s) 94, 322, 409, 626, 740, 876, 1105, 1129
HspAI GCGC 4 cut(s) 114, 626, 635, 656
KflI GGGWCCC 2 cut(s) 447, 542
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 4 cut(s) 16, 120, 837, 1032
LmnI GCTCC 4 cut(s) 111, 327, 1070, 1223
Lsp1109I GCAGC 6 cut(s) 92, 246, 908, 929, 1135, 1163
LweI GCATC 3 cut(s) 594, 609, 1098
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 3 cut(s) 50, 971, 1118
MaeII ACGT 3 cut(s) 425, 684, 789
MaeIII GTNAC 3 cut(s) 685, 1003, 1078
MalI GATC 4 cut(s) 18, 122, 839, 1034
MboI GATC 4 cut(s) 16, 120, 837, 1032
MboII GAAGA 4 cut(s) 253, 487, 599, 1035
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 4 cut(s) 684, 717, 732, 872
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 7 cut(s) 210, 294, 959, 1113, 1143, 1180, 1248
MluNI TGGCCA 1 cut(s) 95
MlyI GAGTC 5 cut(s) 83, 149, 204, 213, 472
MmeI TCCRAC 3 cut(s) 181, 492, 1201
Mox20I TGGCCA 1 cut(s) 95
Mph1103I ATGCAT 1 cut(s) 624
MscI TGGCCA 1 cut(s) 95
MseI TTAA 1 cut(s) 1258
MslI CAYNNNNRTG 1 cut(s) 735
Msp20I TGGCCA 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 6 cut(s) 28, 42, 188, 373, 497, 665
MvnI CGCG 4 cut(s) 116, 509, 632, 656
NciI CCSGG 5 cut(s) 289, 307, 326, 521, 1058
NcoI CCATGG 1 cut(s) 90
NdeII GATC 4 cut(s) 16, 120, 837, 1032
NlaIII CATG 8 cut(s) 94, 322, 409, 626, 740, 876, 1105, 1129
NlaIV GGNNCC 4 cut(s) 448, 449, 543, 544
NmeAIII GCCGAG 2 cut(s) 40, 514
NmuCI GTSAC 3 cut(s) 685, 1003, 1078
NsbI TGCGCA 1 cut(s) 627
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 2 cut(s) 322, 626
PaeI GCATGC 1 cut(s) 626
PceI AGGCCT 3 cut(s) 128, 278, 846
PcsI WCGNNNNNNNCGW 1 cut(s) 422
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 4 cut(s) 181, 695, 719, 1097
PfoI TCCNGGA 1 cut(s) 324
PleI GAGTC 5 cut(s) 82, 148, 203, 212, 472
PmaCI CACGTG 2 cut(s) 685, 790
PmlI CACGTG 2 cut(s) 685, 790
PpsI GAGTC 5 cut(s) 82, 148, 203, 212, 472
Ppu21I YACGTR 2 cut(s) 685, 790
PpuMI RGGWCCY 2 cut(s) 447, 542
Psp5II RGGWCCY 2 cut(s) 447, 542
Psp6I CCWGG 6 cut(s) 26, 40, 186, 371, 495, 663
PspCI CACGTG 2 cut(s) 685, 790
PspEI GGTNACC 1 cut(s) 1078
PspGI CCWGG 6 cut(s) 26, 40, 186, 371, 495, 663
PspN4I GGNNCC 4 cut(s) 448, 449, 543, 544
PspPI GGNCC 5 cut(s) 24, 375, 447, 493, 542
PspPPI RGGWCCY 2 cut(s) 447, 542
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 538, 1124
RsaNI GTAC 2 cut(s) 537, 1123
RseI CAYNNNNRTG 1 cut(s) 735
SalI GTCGAC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 1258
Sau3AI GATC 4 cut(s) 16, 120, 837, 1032
Sau96I GGNCC 5 cut(s) 24, 375, 447, 493, 542
SchI GAGTC 5 cut(s) 83, 149, 204, 213, 472
SduI GDGCHC 4 cut(s) 684, 717, 732, 872
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 3 cut(s) 594, 609, 1098
SinI GGWCC 4 cut(s) 375, 447, 493, 542
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 2 cut(s) 158, 951
SmoI CTYRAG 2 cut(s) 158, 951
SphI GCATGC 1 cut(s) 626
Sse9I AATT 7 cut(s) 210, 294, 959, 1113, 1143, 1180, 1248
SseBI AGGCCT 3 cut(s) 128, 278, 846
SspMI CTAG 3 cut(s) 50, 971, 1118
StuI AGGCCT 3 cut(s) 128, 278, 846
StyI CCWWGG 3 cut(s) 90, 273, 888
TaaI ACNGT 3 cut(s) 254, 776, 1064
TaiI ACGT 3 cut(s) 428, 687, 792
TaqI TCGA 3 cut(s) 123, 179, 435
TasI AATT 7 cut(s) 210, 294, 959, 1113, 1143, 1180, 1248
TatI WGTACW 1 cut(s) 1122
TauI GCSGC 5 cut(s) 135, 272, 287, 341, 635
TfiI GAWTC 4 cut(s) 181, 695, 719, 1097
Tru1I TTAA 1 cut(s) 1258
Tru9I TTAA 1 cut(s) 1258
TscAI CASTG 3 cut(s) 840, 858, 1069
TseFI GTSAC 3 cut(s) 685, 1003, 1078
TseI GCWGC 6 cut(s) 105, 234, 896, 942, 1148, 1176
Tsp45I GTSAC 3 cut(s) 685, 1003, 1078
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 3 cut(s) 840, 858, 1069
VpaK11BI GGWCC 4 cut(s) 375, 447, 493, 542
XapI RAATTY 1 cut(s) 1113
XceI RCATGY 2 cut(s) 322, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 3 cut(s) 50, 971, 1118
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.