Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013491

Physical Location & Seq

Genomic Coordinates Forward (+)

22737475 .. 22739443

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCCGCAAAGACACTCGAAGAACAACAATGATCTTGCGTATTTCACTTACGACGAGAAGAAGAAGTTAGGTTATGGAACTCAGAGAGAGAGATTGGGGAGAGACTCGATCAAACCCTTTGATGCTTGTTCTCTCTGCTTGAAGCCTTTCATTGATCCGATGTGTTGCCATAAGGGTCATGTCTTTTGCAGAGAGTGTATACTTGAATGTTTCCTTGCTCAGAAGAAAGATATCCAAAGGAGGCTTGCTGCACATTCGTCTCAAAAGAAGCAAGATAAGGATGAAGAAGAAGAGAGGCTAATGTTACAAAAGGCGAGAGAGCTCGACGAATTTGATCAGCAAAACCATAGTGCAATGCCTCGAAACAGTGACAAGAATCACAACGAAGATAAGAATGGTTTTCATGGGGCAAACAGTGTGAAGACGACTTCCTTTGAAGAAGAAGCGCTTAGGACAATGAAAGCCTTCTGGCTCCCATCAGCTACACCAGCAGCTTCGGTCAGAGTAGATGCTCCAGAAACTCACACAGTCTGTCCAGAGGGCAAAGAGAAGCTCAAGCTTAAGAACCTCTTTGCAATTCGTTTCACAGAAGACAACAGCGAAGAGGAAGAGACCAAGACAAAATCAGCATCTTCAAGCTCTTATGATAAATCCTACATCTGCCCGAGCTGCAAAGTCACTCTCACCAACACAATGTCCCTCGTGGCACTTAGCTCATGCGGACATGTTTTCTGCAAGAAGTGTGCTGAGAAGTTTATGCCCGTCGACAAAGTCTGTCTTGTGTGTGACAAACCTTGCAAGGATAGGAACTTGGTTGGGTTAAAGAAAGGAGGCACGGGTTTCGCTGAGCACGACGATCATCTTGAGGCTAAGGAGTACAAGCATTTGGGTAGTGGATCTGGTTTGGGGCTTGTGAGGCCGGTTAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rtf2 zf-NOSIP zf-RING_UBOX

Protein Analysis

310

Amino Acids

35.02

Weight (kDa)

8.38

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-NOSIP	PF15906	5 - 75	4.1e-15	Zinc-finger of nitric oxide synthase-interacting protein
Rtf2	PF04641	186 - 291	3.3e-10	Rtf2 RING-finger
zf-RING_5	PF14634	221 - 264	1.7e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61620
fragaria_vesca	FvH4_3g03660
malus_domestica	MD05G1329000.v1.1 MD10G1305900.v1.1
prunus_persica	Prupe.4G033800_v2.0.a1
pyrus_communis	pycom05g30230 pycom10g25820
rosa_chinensis	RchiOBHm_Chr5g0005701
rosa_laevigata	RLG00000031319
rosa_multiflora	Rmu_sc0010248.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070140
rosa_rugosa	Rorug04G0417400
rosa_samantha	Rh5AG045000 Rh5BG043700 Rh5CG052500 Rh5DG043500
rosa_wichuraiana	Rw0G008370 Rw5G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	199, 765
AciI	CCGC	2 cut(s)	5, 720
AclWI	GGATC	2 cut(s)	149, 904
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	878
AfeI	AGCGCT	1 cut(s)	447
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	142, 206, 437, 636
AluBI	AGCT	8 cut(s)	322, 482, 494, 553, 559, 639, 669, 714
AluI	AGCT	8 cut(s)	322, 482, 494, 553, 559, 639, 669, 714
Alw21I	GWGCWC	2 cut(s)	324, 852
Alw26I	GTCTC	3 cut(s)	96, 264, 605
AlwI	GGATC	2 cut(s)	149, 904
Ama87I	CYCGRG	1 cut(s)	664
Aor51HI	AGCGCT	1 cut(s)	447
AoxI	GGCC	1 cut(s)	917
ApeKI	GCWGC	3 cut(s)	248, 491, 669
ApoI	RAATTY	1 cut(s)	329
Asp700I	GAANNNNTTC	2 cut(s)	146, 464
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	676
AvaI	CYCGRG	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	701
BbsI	GAAGAC	2 cut(s)	428, 597
Bbv12I	GWGCWC	2 cut(s)	324, 852
BbvI	GCAGC	3 cut(s)	235, 503, 656
BccI	CCATC	1 cut(s)	484
BcgI	CGANNNNNNTGC	2 cut(s)	823, 857
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	96, 264, 605
BfoI	RGCGCY	1 cut(s)	449
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	4 cut(s)	5, 249, 492, 670
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	4 cut(s)	6, 250, 493, 671
BmeT110I	CYCGRG	1 cut(s)	664
BmiI	GGNNCC	1 cut(s)	473
BmsI	GCATC	3 cut(s)	112, 499, 638
BpiI	GAAGAC	2 cut(s)	428, 597
BpmI	CTGGAG	1 cut(s)	498
Bpu10I	CCTNAGC	2 cut(s)	449, 870
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	539, 884
BsaI	GGTCTC	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	919
Bse3DI	GCAATG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	4 cut(s)	95, 233, 738, 837
BseXI	GCAGC	3 cut(s)	235, 503, 656
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	919
BsiHKAI	GWGCWC	2 cut(s)	324, 852
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	682
BsmAI	GTCTC	3 cut(s)	96, 264, 605
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	919
Bso31I	GGTCTC	1 cut(s)	605
BsoBI	CYCGRG	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	324, 852
Bsp143I	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	2 cut(s)	5, 720
BspANI	GGCC	1 cut(s)	919
BspCNI	CTCAG	4 cut(s)	94, 232, 739, 838
BspLI	GGNNCC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	149, 904
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	919
BssAI	RCCGGY	1 cut(s)	919
BssMI	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
BssNAI	GTATAC	1 cut(s)	200
BssSI	CACGAG	1 cut(s)	701
Bst1107I	GTATAC	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	701
Bst4CI	ACNGT	3 cut(s)	368, 416, 529
Bst6I	CTCTTC	3 cut(s)	285, 597, 603
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	7 cut(s)	81, 219, 449, 710, 747, 846, 870
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	6 cut(s)	34, 111, 157, 337, 859, 899
BstMAI	GTCTC	3 cut(s)	96, 264, 605
BstMBI	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 669, 916
BstNSI	RCATGY	1 cut(s)	728
BstV1I	GCAGC	3 cut(s)	235, 503, 656
BstV2I	GAAGAC	2 cut(s)	428, 597
BstX2I	RGATCY	1 cut(s)	896
BstYI	RGATCY	1 cut(s)	896
BstZ17I	GTATAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	919
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	373, 421
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	919
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	5 cut(s)	179, 404, 717, 725, 930
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	7 cut(s)	81, 219, 449, 710, 747, 846, 870
DpnI	GATC	6 cut(s)	33, 110, 156, 336, 858, 898
DpnII	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
Eam1104I	CTCTTC	3 cut(s)	285, 597, 603
EarI	CTCTTC	3 cut(s)	285, 597, 603
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	605
Eco32I	GATATC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	5 cut(s)	182, 407, 720, 728, 933
FalI	AAGNNNNNCTT	6 cut(s)	432, 464, 554, 586, 762, 794
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	5 cut(s)	178, 403, 716, 724, 929
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	2 cut(s)	199, 765
Fnu4HI	GCNGC	4 cut(s)	5, 249, 492, 670
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	5, 249, 492, 670
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	5, 249, 492, 670
GsuI	CTGGAG	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	919
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	5 cut(s)	182, 407, 720, 728, 933
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	2 cut(s)	104, 376
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	2 cut(s)	200, 766
Hpy188I	TCNGA	4 cut(s)	84, 159, 222, 503
Hpy188III	TCNNGA	3 cut(s)	515, 536, 863
Hpy8I	GTNNAC	2 cut(s)	200, 766
Hpy99I	CGWCG	4 cut(s)	56, 329, 767, 857
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	3 cut(s)	368, 416, 529
HpyCH4V	TGCA	7 cut(s)	189, 251, 353, 575, 672, 735, 798
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 669, 916
HpyF3I	CTNAG	7 cut(s)	81, 219, 449, 710, 747, 846, 870
Hsp92II	CATG	5 cut(s)	182, 407, 720, 728, 933
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
LmnI	GCTCC	2 cut(s)	477, 517
LpnPI	CCDG	5 cut(s)	454, 501, 528, 549, 885
Lsp1109I	GCAGC	3 cut(s)	235, 503, 656
LweI	GCATC	3 cut(s)	112, 499, 638
MaeIII	GTNAC	4 cut(s)	303, 368, 676, 785
MalI	GATC	6 cut(s)	33, 110, 156, 336, 858, 898
MboI	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	2 cut(s)	324, 852
MluCI	AATT	2 cut(s)	329, 576
MlyI	GAGTC	1 cut(s)	98
MroXI	GAANNNNTTC	2 cut(s)	146, 464
MseI	TTAA	3 cut(s)	561, 821, 924
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	920
MwoI	GCNNNNNNNGC	3 cut(s)	488, 669, 916
NdeII	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
NlaIII	CATG	5 cut(s)	182, 407, 720, 728, 933
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	3 cut(s)	368, 676, 785
NspI	RCATGY	1 cut(s)	728
PciI	ACATGT	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	849
PdmI	GAANNNNTTC	2 cut(s)	146, 464
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	770
PkrI	GCNGC	4 cut(s)	6, 250, 493, 671
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PscI	ACATGT	1 cut(s)	724
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	896
PsyI	GACNNNGTC	1 cut(s)	770
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
SacI	GAGCTC	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	561, 821, 924
SatI	GCNGC	4 cut(s)	5, 249, 492, 670
Sau3AI	GATC	6 cut(s)	31, 108, 154, 334, 856, 896
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	324, 852
SfaNI	GCATC	3 cut(s)	112, 499, 638
SmlI	CTYRAG	3 cut(s)	554, 560, 863
SmoI	CTYRAG	3 cut(s)	554, 560, 863
Sse9I	AATT	2 cut(s)	329, 576
SsiI	CCGC	2 cut(s)	5, 720
SstI	GAGCTC	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	368, 416, 529
TaqI	TCGA	5 cut(s)	17, 107, 324, 361, 765
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	2 cut(s)	329, 576
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	561, 821, 924
Tru9I	TTAA	3 cut(s)	561, 821, 924
TscAI	CASTG	2 cut(s)	373, 421
TseFI	GTSAC	3 cut(s)	368, 676, 785
TseI	GCWGC	3 cut(s)	248, 491, 669
Tsp45I	GTSAC	3 cut(s)	368, 676, 785
TspDTI	ATGAA	4 cut(s)	139, 297, 392, 473
TspRI	CASTG	2 cut(s)	373, 421
Tth111I	GACNNNGTC	1 cut(s)	770
Vha464I	CTTAAG	1 cut(s)	560
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	728
XmiI	GTMKAC	2 cut(s)	199, 765
XmnI	GAANNNNTTC	2 cut(s)	146, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.