Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010248.1

Orthogroup ID

OG0013491

Physical Location & Seq

Genomic Coordinates Reverse (-)

16463 .. 19065

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010248.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgaaacgacatgtggtttttgttgcggttctaattcccaatcgaaccgaacccggatgtggcccaatacatatttcggggcggctgcttctgcagtctgcatctctctccctcttattcaatccccaaatcaaaggacttccccaaatcccttactcttcttcttctctcagagataataatatgcctcagagacactcgaagaacaacaacgacctcgcgttcttcacatacgacgagaagcgaaagcttgggtatggaacccagagggagagactcggcagagactccatcaaacccttcgatgcttgttgcctctgcttgaagcccttcatcgaccccatgagttgccagaaaggccatgtcttttgcaaggagtgcattctcgaatgcttgctttcccagaagaaagacatccacagaaagcaagttgcacataatagtcagcagaagcaagacaaggaagatgaagaagagaagttaaggcaacagaaagccagagagcttgaggcttttgatcagcaaaaccatggtgcagtaccgcactacaatgatagaaaccaggaccgggataagaatggttttcatggggcaaatagtgtgaaggtcacttcttacgaagaagaggcacttcggacaatgaaggcattttggctgccttctgctacgccagaagctcctgttaaagtggctgccccccctgaatgcacaacctgtccagaaggaagcgagaaactaaagctgaagtctcttttccctatccatttcactgaagacaccaacgacgagaagaaatcaacgcctcttgacaagacatttatctgtccgagctgcaaggttaccttaacaaacacgctatcactcgtggctcttagctcatgtggccacgtcttctgtaagaagtgtgctgataagttcatacctgtagataaggtttgtctcgtttgcaacaagggatgcaaagaaaggaacttggtgaacctgaaaaaaggagggaccggctttgctggccacgacgatgatcttgaagccaaagatttcaagcacttggggagtggctcaggtcttgggttagtgagacccgcagcaaagacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rtf2 zf-NOSIP zf-RING_UBOX

Protein Analysis

365

Amino Acids

40.78

Weight (kDa)

8.83

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61620
fragaria_vesca	FvH4_3g03660
malus_domestica	MD05G1329000.v1.1 MD10G1305900.v1.1
prunus_persica	Prupe.4G033800_v2.0.a1
pyrus_communis	pycom05g30230 pycom10g25820
rosa_chinensis	RchiOBHm_Chr5g0005701
rosa_laevigata	RLG00000031319
rosa_multiflora	Rmu_sc0010248.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070140
rosa_rugosa	Rorug04G0417400
rosa_samantha	Rh5AG045000 Rh5BG043700 Rh5CG052500 Rh5DG043500
rosa_wichuraiana	Rw0G008370 Rw5G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	221
AciI	CCGC	4 cut(s)	26, 82, 542, 1083
AcoI	YGGCCR	2 cut(s)	883, 1009
AcuI	CTGAAG	2 cut(s)	764, 792
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	59, 568
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	4 cut(s)	121, 325, 1028, 1042
AjiI	CACGTC	1 cut(s)	889
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	6 cut(s)	250, 505, 677, 742, 831, 876
AluI	AGCT	6 cut(s)	250, 505, 677, 742, 831, 876
Alw26I	GTCTC	6 cut(s)	187, 268, 279, 753, 944, 1072
AoxI	GGCC	4 cut(s)	61, 358, 883, 1009
ApeKI	GCWGC	5 cut(s)	85, 655, 692, 831, 1085
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	62, 565, 996
AsuC2I	CCSGG	2 cut(s)	54, 569
AsuHPI	GGTGA	1 cut(s)	988
AvaII	GGWCC	2 cut(s)	565, 996
BalI	TGGCCA	2 cut(s)	885, 1011
BauI	CACGAG	1 cut(s)	863
BbsI	GAAGAC	2 cut(s)	780, 883
BbvI	GCAGC	4 cut(s)	72, 642, 679, 818
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	563
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	2 cut(s)	54, 569
BcoDI	GTCTC	6 cut(s)	187, 268, 279, 753, 944, 1072
BfmI	CTRYAG	2 cut(s)	92, 924
BglI	GCCNNNNNGGC	1 cut(s)	357
BisI	GCNGC	6 cut(s)	83, 86, 656, 693, 832, 1086
BlsI	GCNGC	6 cut(s)	84, 87, 657, 694, 833, 1087
Bme1390I	CCNGG	3 cut(s)	54, 563, 569
Bme18I	GGWCC	2 cut(s)	565, 996
BmgBI	CACGTC	1 cut(s)	889
BmgT120I	GGNCC	3 cut(s)	62, 565, 996
BmiI	GGNNCC	2 cut(s)	262, 997
BmrFI	CCNGG	3 cut(s)	54, 563, 569
BmsI	GCATC	3 cut(s)	110, 295, 947
BpiI	GAAGAC	2 cut(s)	780, 883
Bpu10I	CCTNAGC	1 cut(s)	1060
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	54, 569
BsaI	GGTCTC	1 cut(s)	1072
BsaJI	CCNNGG	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 568
Bse118I	RCCGGY	1 cut(s)	998
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	3 cut(s)	62, 414, 962
BseLI	CCNNNNNNNGG	2 cut(s)	59, 568
BseMII	CTCAG	3 cut(s)	184, 203, 1074
BseXI	GCAGC	4 cut(s)	72, 642, 679, 818
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	4 cut(s)	63, 360, 885, 1011
BsiSI	CCGG	3 cut(s)	54, 568, 999
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	2 cut(s)	59, 568
BsmAI	GTCTC	6 cut(s)	187, 268, 279, 753, 944, 1072
BsmFI	GGGAC	1 cut(s)	1009
BsmI	GAATGC	3 cut(s)	381, 395, 710
BsnI	GGCC	4 cut(s)	63, 360, 885, 1011
Bso31I	GGTCTC	1 cut(s)	1072
Bsp143I	GATC	2 cut(s)	517, 1021
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	4 cut(s)	26, 82, 542, 1083
BspANI	GGCC	4 cut(s)	63, 360, 885, 1011
BspCNI	CTCAG	3 cut(s)	183, 202, 1073
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	2 cut(s)	262, 997
BspMAI	CTGCAG	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	1072
BsrFI	RCCGGY	1 cut(s)	998
BssAI	RCCGGY	1 cut(s)	998
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	2 cut(s)	517, 1021
BssSI	CACGAG	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	529
Bst2BI	CACGAG	1 cut(s)	863
Bst2UI	CCWGG	1 cut(s)	563
Bst6I	CTCTTC	3 cut(s)	163, 468, 618
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	395, 1009
BstDEI	CTNAG	4 cut(s)	170, 189, 872, 1060
BstDSI	CCRYGG	1 cut(s)	529
BstEII	GGTNACC	1 cut(s)	838
BstF5I	GGATG	3 cut(s)	62, 414, 962
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	2 cut(s)	520, 1024
BstMAI	GTCTC	6 cut(s)	187, 268, 279, 753, 944, 1072
BstMBI	GATC	2 cut(s)	517, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 357, 378, 882, 1008
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	838
BstSCI	CCNGG	3 cut(s)	52, 561, 567
BstSFI	CTRYAG	2 cut(s)	92, 924
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	72, 642, 679, 818
BstV2I	GAAGAC	2 cut(s)	780, 883
BsuRI	GGCC	4 cut(s)	63, 360, 885, 1011
BtgI	CCRYGG	1 cut(s)	529
BtrI	CACGTC	1 cut(s)	889
BtsCI	GGATG	3 cut(s)	62, 414, 962
BtsIMutI	CAGTG	1 cut(s)	768
Cac8I	GCNNGC	2 cut(s)	395, 1009
Cfr10I	RCCGGY	1 cut(s)	998
Cfr13I	GGNCC	3 cut(s)	62, 565, 996
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	6 cut(s)	11, 343, 362, 530, 587, 879
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	4 cut(s)	170, 189, 872, 1060
DpnI	GATC	2 cut(s)	519, 1023
DpnII	GATC	2 cut(s)	517, 1021
EaeI	YGGCCR	2 cut(s)	883, 1009
Eam1104I	CTCTTC	3 cut(s)	163, 468, 618
EarI	CTCTTC	3 cut(s)	163, 468, 618
Eco130I	CCWWGG	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	1072
Eco47I	GGWCC	2 cut(s)	565, 996
Eco57I	CTGAAG	2 cut(s)	764, 792
Eco91I	GGTNACC	1 cut(s)	838
EcoO65I	GGTNACC	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	6 cut(s)	14, 346, 365, 533, 590, 882
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 827, 859
FaqI	GGGAC	1 cut(s)	1009
FatI	CATG	6 cut(s)	10, 342, 361, 529, 586, 878
FauI	CCCGC	1 cut(s)	1090
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	6 cut(s)	83, 86, 656, 693, 832, 1086
FokI	GGATG	3 cut(s)	69, 401, 969
Fsp4HI	GCNGC	6 cut(s)	83, 86, 656, 693, 832, 1086
GluI	GCNGC	6 cut(s)	83, 86, 656, 693, 832, 1086
HaeIII	GGCC	4 cut(s)	63, 360, 885, 1011
HapII	CCGG	3 cut(s)	54, 568, 999
Hin1II	CATG	6 cut(s)	14, 346, 365, 533, 590, 882
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	276, 287
HpaII	CCGG	3 cut(s)	54, 568, 999
HphI	GGTGA	1 cut(s)	988
Hpy166II	GTNNAC	1 cut(s)	979
Hpy188I	TCNGA	4 cut(s)	173, 192, 636, 828
Hpy188III	TCNNGA	4 cut(s)	386, 719, 806, 1025
Hpy8I	GTNNAC	1 cut(s)	979
Hpy99I	CGWCG	3 cut(s)	239, 788, 1019
HpyAV	CCTTC	6 cut(s)	310, 340, 598, 637, 669, 716
HpyCH4IV	ACGT	1 cut(s)	888
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 357, 378, 882, 1008
HpyF3I	CTNAG	4 cut(s)	170, 189, 872, 1060
HpySE526I	ACGT	1 cut(s)	888
Hsp92II	CATG	6 cut(s)	14, 346, 365, 533, 590, 882
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	517, 1021
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	4 cut(s)	72, 642, 679, 818
LweI	GCATC	3 cut(s)	110, 295, 947
MaeII	ACGT	1 cut(s)	888
MaeIII	GTNAC	2 cut(s)	607, 838
MalI	GATC	2 cut(s)	519, 1023
MboI	GATC	2 cut(s)	517, 1021
MlsI	TGGCCA	2 cut(s)	885, 1011
MluCI	AATT	1 cut(s)	33
MluNI	TGGCCA	2 cut(s)	885, 1011
MlyI	GAGTC	2 cut(s)	270, 281
MnlI	CCTC	9 cut(s)	122, 198, 227, 261, 326, 502, 619, 813, 986
Mox20I	TGGCCA	2 cut(s)	885, 1011
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	2 cut(s)	885, 1011
MseI	TTAA	4 cut(s)	482, 684, 845, 1096
MslI	CAYNNNNRTG	2 cut(s)	549, 1017
Msp20I	TGGCCA	2 cut(s)	885, 1011
MspI	CCGG	3 cut(s)	54, 568, 999
MspR9I	CCNGG	3 cut(s)	54, 563, 569
Mva1269I	GAATGC	3 cut(s)	381, 395, 710
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	5 cut(s)	91, 357, 378, 882, 1008
NciI	CCSGG	2 cut(s)	54, 569
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	2 cut(s)	517, 1021
NlaIII	CATG	6 cut(s)	14, 346, 365, 533, 590, 882
NlaIV	GGNNCC	2 cut(s)	262, 997
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	607
NspI	RCATGY	1 cut(s)	14
PciI	ACATGT	1 cut(s)	10
PctI	GAATGC	3 cut(s)	381, 395, 710
PdmI	GAANNNNTTC	1 cut(s)	329
PkrI	GCNGC	6 cut(s)	84, 87, 657, 694, 833, 1087
PleI	GAGTC	2 cut(s)	270, 281
PpsI	GAGTC	2 cut(s)	270, 281
PscI	ACATGT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	561
PspEI	GGTNACC	1 cut(s)	838
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	262, 997
PspPI	GGNCC	3 cut(s)	62, 565, 996
PstI	CTGCAG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	549, 1017
SaqAI	TTAA	4 cut(s)	482, 684, 845, 1096
SatI	GCNGC	6 cut(s)	83, 86, 656, 693, 832, 1086
Sau3AI	GATC	2 cut(s)	517, 1021
Sau96I	GGNCC	3 cut(s)	62, 565, 996
SchI	GAGTC	2 cut(s)	270, 281
ScrFI	CCNGG	3 cut(s)	54, 563, 569
SfaNI	GCATC	3 cut(s)	110, 295, 947
SfcI	CTRYAG	2 cut(s)	92, 924
SinI	GGWCC	2 cut(s)	565, 996
SmiMI	CAYNNNNRTG	2 cut(s)	549, 1017
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	4 cut(s)	26, 82, 542, 1083
StyD4I	CCNGG	3 cut(s)	52, 561, 567
StyI	CCWWGG	1 cut(s)	529
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	5 cut(s)	43, 200, 303, 336, 387
TasI	AATT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	85
Tru1I	TTAA	4 cut(s)	482, 684, 845, 1096
Tru9I	TTAA	4 cut(s)	482, 684, 845, 1096
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	5 cut(s)	85, 655, 692, 831, 1085
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	6 cut(s)	17, 322, 483, 575, 656, 907
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	565, 996
XceI	RCATGY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.