Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013491

Physical Location & Seq

Genomic Coordinates Forward (+)

2051965 .. 2054538

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCCTCAGAGACACTCCAAGAACAACAACGACCTCGCGTTCTTCACATATGACGAGAAGCGGAAGCTCGGTTATGGGACCCAGAGGGAGAGACTCGGCAGAGACTCCATTAAACCCTTCGATGCTTGTTGCCTCTGCTTGAAGCCCTTCATCGACCCCATGAGCTGCCAGAAAGGCCATGTCTTCTGCAAGGAATGCATTCTCGAATGCTTGCTTTCTCAGAAGAAGGACATCCATAGAAAGCAAGTGGCACATAATAGTCAGCAGAAGCAAGAGAAGGAAGATGAAGAAGAGAGGTTAAGGCAACAGAAAGCCAGAGAGCTTGAGTCTTTCGATCAGCAAAACCATGGTGCAGTACCGCACTACAATGATAGAAACCAGGACCAGGATAAGGGTGGGTTTCATGGGGCAAATAGTGTGAAGGTGACTTCTTATGAAGAAGAGGCGCTTCGGACAATGAAGGCATTTTGGCTGCCTTCTGCTACACCAGAAGCTCCTGTTAAAGTGGCTGCTCCCCCTGAATGCACAACCTGTCCAGAAGGTAGCGAGAAACTAAAGCTGAAGTCTCTTTTCCCTGTCCATTTCACTGAAGACATAAACGACGAGAAGAAATCAACGCCTCTGGACAAGACATATATCTGTCCAAGCTGCAAGGTTACATTAACAAACACATTGTCACTTGTGGCTCTTAGCTCATGTGGTCACGTTTTCTGTAAGAAGTGTGCTGATAAGTTCATACCTGTAGATAAGGTTTGTCTTGTTTGCAATAAAGGGTGTAAAGAGAGAAACATGGTGAACCTGAAAAAAGGAGGGACTGGCTTTGCTGGCCACGACGATGATCTTGAAGCCAAAGATTTCAAGCATTTGGGGAGCGGTTCAGGTCTCGGGTTAGTGAGACCCGCAGTGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rtf2 zf-NOSIP zf-RING_UBOX

Protein Analysis

305

Amino Acids

34.15

Weight (kDa)

8.47

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-NOSIP	PF15906	5 - 75	6.4e-16	Zinc-finger of nitric oxide synthase-interacting protein
Rtf2	PF04641	186 - 268	2.1e-08	Rtf2 RING-finger
zf-RING_5	PF14634	214 - 257	4.1e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61620
fragaria_vesca	FvH4_3g03660
malus_domestica	MD05G1329000.v1.1 MD10G1305900.v1.1
prunus_persica	Prupe.4G033800_v2.0.a1
pyrus_communis	pycom05g30230 pycom10g25820
rosa_chinensis	RchiOBHm_Chr5g0005701
rosa_laevigata	RLG00000031319
rosa_multiflora	Rmu_sc0010248.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070140
rosa_rugosa	Rorug04G0417400
rosa_samantha	Rh5AG045000 Rh5BG043700 Rh5CG052500 Rh5DG043500
rosa_wichuraiana	Rw0G008370 Rw5G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	1 cut(s)	38
AciI	CCGC	4 cut(s)	61, 359, 873, 900
AcoI	YGGCCR	1 cut(s)	826
AcuI	CTGAAG	2 cut(s)	581, 609
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	385, 391
AgsI	TTSAA	3 cut(s)	142, 845, 859
AjnI	CCWGG	2 cut(s)	378, 384
AluBI	AGCT	7 cut(s)	67, 165, 322, 494, 559, 648, 693
AluI	AGCT	7 cut(s)	67, 165, 322, 494, 559, 648, 693
Alw26I	GTCTC	6 cut(s)	4, 85, 96, 570, 887, 889
Ama87I	CYCGRG	1 cut(s)	884
AoxI	GGCC	2 cut(s)	175, 826
ApeKI	GCWGC	4 cut(s)	165, 472, 509, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	2 cut(s)	146, 198
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	78, 382
AsuHPI	GGTGA	2 cut(s)	436, 805
AvaI	CYCGRG	1 cut(s)	884
AvaII	GGWCC	2 cut(s)	78, 382
BalI	TGGCCA	1 cut(s)	828
BbsI	GAAGAC	2 cut(s)	175, 597
BbvI	GCAGC	4 cut(s)	152, 459, 496, 635
BciT130I	CCWGG	2 cut(s)	380, 386
BcoDI	GTCTC	6 cut(s)	4, 85, 96, 570, 887, 889
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	449
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	166, 473, 510, 649
BlsI	GCNGC	4 cut(s)	167, 474, 511, 650
Bme1390I	CCNGG	2 cut(s)	380, 386
Bme18I	GGWCC	2 cut(s)	78, 382
BmeT110I	CYCGRG	1 cut(s)	884
BmgT120I	GGNCC	2 cut(s)	78, 382
BmiI	GGNNCC	2 cut(s)	79, 80
BmrFI	CCNGG	2 cut(s)	380, 386
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	175, 597
BpuEI	CTTGAG	1 cut(s)	344
BsaI	GGTCTC	2 cut(s)	887, 889
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 391
Bse1I	ACTGG	1 cut(s)	820
BseBI	CCWGG	2 cut(s)	380, 386
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	385, 391
BseMII	CTCAG	2 cut(s)	20, 233
BseNI	ACTGG	1 cut(s)	820
BseXI	GCAGC	4 cut(s)	152, 459, 496, 635
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	177, 828
BsiHKCI	CYCGRG	1 cut(s)	884
BslFI	GGGAC	2 cut(s)	91, 826
BslI	CCNNNNNNNGG	2 cut(s)	385, 391
BsmAI	GTCTC	6 cut(s)	4, 85, 96, 570, 887, 889
BsmFI	GGGAC	2 cut(s)	91, 826
BsmI	GAATGC	4 cut(s)	198, 200, 212, 527
BsnI	GGCC	2 cut(s)	177, 828
Bso31I	GGTCTC	2 cut(s)	887, 889
BsoBI	CYCGRG	1 cut(s)	884
Bsp143I	GATC	2 cut(s)	334, 838
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	4 cut(s)	61, 359, 873, 900
BspANI	GGCC	2 cut(s)	177, 828
BspCNI	CTCAG	2 cut(s)	19, 232
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	79, 80
BspTNI	GGTCTC	2 cut(s)	887, 889
BsrBI	CCGCTC	1 cut(s)	873
BsrI	ACTGG	1 cut(s)	820
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	2 cut(s)	334, 838
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	380, 386
Bst6I	CTCTTC	2 cut(s)	285, 435
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	212, 826
BstDEI	CTNAG	3 cut(s)	6, 219, 689
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	2 cut(s)	337, 841
BstMAI	GTCTC	6 cut(s)	4, 85, 96, 570, 887, 889
BstMBI	GATC	2 cut(s)	334, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 195, 825
BstNI	CCWGG	2 cut(s)	380, 386
BstSCI	CCNGG	2 cut(s)	378, 384
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	152, 459, 496, 635
BstV2I	GAAGAC	2 cut(s)	175, 597
BsuRI	GGCC	2 cut(s)	177, 828
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	2 cut(s)	585, 909
Cac8I	GCNNGC	2 cut(s)	212, 826
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	78, 382
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	6 cut(s)	160, 179, 347, 404, 696, 790
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	3 cut(s)	6, 219, 689
DpnI	GATC	2 cut(s)	336, 840
DpnII	GATC	2 cut(s)	334, 838
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	285, 435
EarI	CTCTTC	2 cut(s)	285, 435
Eco130I	CCWWGG	1 cut(s)	346
Eco31I	GGTCTC	2 cut(s)	887, 889
Eco47I	GGWCC	2 cut(s)	78, 382
Eco57I	CTGAAG	2 cut(s)	581, 609
Eco88I	CYCGRG	1 cut(s)	884
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	378, 384
EcoT14I	CCWWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	6 cut(s)	163, 182, 350, 407, 699, 793
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	2 cut(s)	91, 826
FatI	CATG	6 cut(s)	159, 178, 346, 403, 695, 789
FauI	CCCGC	1 cut(s)	907
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	4 cut(s)	166, 473, 510, 649
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	4 cut(s)	166, 473, 510, 649
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	4 cut(s)	166, 473, 510, 649
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	177, 828
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	6 cut(s)	163, 182, 350, 407, 699, 793
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	93, 104, 326
HphI	GGTGA	2 cut(s)	436, 805
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	3 cut(s)	9, 222, 453
Hpy188III	TCNNGA	4 cut(s)	203, 536, 623, 842
Hpy8I	GTNNAC	1 cut(s)	796
Hpy99I	CGWCG	2 cut(s)	605, 836
HpyAV	CCTTC	8 cut(s)	127, 157, 220, 271, 415, 454, 486, 533
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	6 cut(s)	189, 198, 353, 525, 651, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 195, 825
HpyF3I	CTNAG	3 cut(s)	6, 219, 689
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	6 cut(s)	163, 182, 350, 407, 699, 793
HspAI	GCGC	1 cut(s)	446
KflI	GGGWCCC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	334, 838
LmnI	GCTCC	3 cut(s)	499, 517, 870
Lsp1109I	GCAGC	4 cut(s)	152, 459, 496, 635
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	4 cut(s)	424, 655, 675, 701
MalI	GATC	2 cut(s)	336, 840
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	2 cut(s)	334, 838
MlsI	TGGCCA	1 cut(s)	828
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	3 cut(s)	87, 98, 335
MnlI	CCTC	8 cut(s)	15, 44, 78, 143, 288, 436, 630, 803
Mox20I	TGGCCA	1 cut(s)	828
Mph1103I	ATGCAT	1 cut(s)	200
MroXI	GAANNNNTTC	2 cut(s)	146, 198
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	4 cut(s)	111, 299, 501, 662
MslI	CAYNNNNRTG	2 cut(s)	366, 834
Msp20I	TGGCCA	1 cut(s)	828
MspR9I	CCNGG	2 cut(s)	380, 386
Mva1269I	GAATGC	4 cut(s)	198, 200, 212, 527
MvaI	CCWGG	2 cut(s)	380, 386
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	174, 195, 825
NcoI	CCATGG	1 cut(s)	346
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	2 cut(s)	334, 838
NlaIII	CATG	6 cut(s)	163, 182, 350, 407, 699, 793
NlaIV	GGNNCC	2 cut(s)	79, 80
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	3 cut(s)	424, 675, 701
NsiI	ATGCAT	1 cut(s)	200
PctI	GAATGC	4 cut(s)	198, 200, 212, 527
PdmI	GAANNNNTTC	2 cut(s)	146, 198
PkrI	GCNGC	4 cut(s)	167, 474, 511, 650
PleI	GAGTC	3 cut(s)	87, 98, 334
PpsI	GAGTC	3 cut(s)	87, 98, 334
PpuMI	RGGWCCY	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	378, 384
PspGI	CCWGG	2 cut(s)	378, 384
PspN4I	GGNNCC	2 cut(s)	79, 80
PspPI	GGNCC	2 cut(s)	78, 382
PspPPI	RGGWCCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	2 cut(s)	366, 834
SaqAI	TTAA	4 cut(s)	111, 299, 501, 662
SatI	GCNGC	4 cut(s)	166, 473, 510, 649
Sau3AI	GATC	2 cut(s)	334, 838
Sau96I	GGNCC	2 cut(s)	78, 382
SchI	GAGTC	3 cut(s)	87, 98, 335
ScrFI	CCNGG	2 cut(s)	380, 386
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	2 cut(s)	78, 382
SmiMI	CAYNNNNRTG	2 cut(s)	366, 834
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SsiI	CCGC	4 cut(s)	61, 359, 873, 900
StyD4I	CCNGG	2 cut(s)	378, 384
StyI	CCWWGG	1 cut(s)	346
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	4 cut(s)	120, 153, 204, 333
Tru1I	TTAA	4 cut(s)	111, 299, 501, 662
Tru9I	TTAA	4 cut(s)	111, 299, 501, 662
TscAI	CASTG	2 cut(s)	592, 909
TseFI	GTSAC	3 cut(s)	424, 675, 701
TseI	GCWGC	4 cut(s)	165, 472, 509, 648
Tsp45I	GTSAC	3 cut(s)	424, 675, 701
TspDTI	ATGAA	6 cut(s)	139, 300, 392, 450, 473, 724
TspRI	CASTG	2 cut(s)	592, 909
VpaK11BI	GGWCC	2 cut(s)	78, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmnI	GAANNNNTTC	2 cut(s)	146, 198
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.