Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013491

Physical Location & Seq

Genomic Coordinates Forward (+)

1571033 .. 1573450

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G033800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCCTCAGAGGCACTCAAAGAACAACAACGACCTCGCTTTCTTCACCTACGATGAGAAGAAAAAGCTAGGCTATGGAACGCAGAAGGAGAGGCTGGGCAGGGACTCCATCAAGCCTTTCGACGCTTGTTGCCTCTGCTTAAAGCACTTCATTAACCCCATGTGCTGCCAGAAAGGCCACGTATTTTGTAAAGAATGTATTTTCGAGTGCTTGCTTTCTCAGAAGAAAGATATCCAGAGAAAGCAAGCTGCACATACTGCTCAGCAGAAGCAAGAGAACCAAGAGGAAGAAGAGAAGTTACTGCAGCAGAAAGCTAGAGAGCTCGAGGCTTTTGATCAGCAAAACCATGGTGCACTACCGCAATACAATGATAGAAACCAGAGCCGAGATAAGACTGGTTTCCATGGTGCCAATAGTGTTAAGGTCACCTCTTATGAAGAAGAGGCGCTTCGGACAATGAAAGCATTTTGGCTGCCTTCTGCTACACCTGCAGCTCCTGCTAAAGTAGATGCTCCTTCTACAAGCACAGTCTGTCCAGAAGGAAGCGAGAAACTAAAGCTGAAGTCCCTTTTCCCAGTTTATTACACAGAAGACAGTAGTGAGGAGAAGAAATCTTCATCTCTGGATAAGACATTTATCTGTCCGAGCTGCAAGGTTACTTTGACCAACACGATGTCGCTCGTGGCTCTTAGTTCATGCGGTCACGTCTTTTGTAAGAAATGTGCTGATAAGTTCATGGCTGTAGATAAGGTTTGCCTTGTTTGCGACAAGGGATGTAAAGAAAGGCATTTGGTGAACTTGGCAAAAGGTGGAACAGGCTTTGCTGGCCATGGAGATAATCTTGAAGCAAAAGACTTCAAGCATTTGGGGAGTGGCTCGGGATTAGGGTTGGTTAGACCCGCAGTGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rtf2 zf-NOSIP zf-RING_UBOX

Protein Analysis

305

Amino Acids

33.85

Weight (kDa)

8.73

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61620
fragaria_vesca	FvH4_3g03660
malus_domestica	MD05G1329000.v1.1 MD10G1305900.v1.1
prunus_persica	Prupe.4G033800_v2.0.a1
pyrus_communis	pycom05g30230 pycom10g25820
rosa_chinensis	RchiOBHm_Chr5g0005701
rosa_laevigata	RLG00000031319
rosa_multiflora	Rmu_sc0010248.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070140
rosa_rugosa	Rorug04G0417400
rosa_samantha	Rh5AG045000 Rh5BG043700 Rh5CG052500 Rh5DG043500
rosa_wichuraiana	Rw0G008370 Rw5G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	3 cut(s)	359, 699, 900
AcoI	YGGCCR	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	845, 859
AjiI	CACGTC	1 cut(s)	706
AluBI	AGCT	7 cut(s)	67, 248, 314, 322, 494, 559, 648
AluI	AGCT	7 cut(s)	67, 248, 314, 322, 494, 559, 648
Alw21I	GWGCWC	2 cut(s)	324, 355
Alw44I	GTGCAC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	2 cut(s)	323, 877
AoxI	GGCC	2 cut(s)	175, 826
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	6 cut(s)	165, 248, 304, 472, 491, 648
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	37, 418, 805
AvaI	CYCGRG	2 cut(s)	323, 877
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	828
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	324
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BauI	CACGAG	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	324, 355
BbvI	GCAGC	6 cut(s)	152, 235, 316, 459, 503, 635
BccI	CCATC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	334
BfaI	CTAG	2 cut(s)	68, 315
BfmI	CTRYAG	3 cut(s)	302, 489, 741
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	496
BglI	GCCNNNNNGGC	2 cut(s)	10, 174
BisI	GCNGC	6 cut(s)	166, 249, 305, 473, 492, 649
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	6 cut(s)	167, 250, 306, 474, 493, 650
BmeT110I	CYCGRG	2 cut(s)	323, 877
BmgBI	CACGTC	1 cut(s)	706
BmiI	GGNNCC	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	346, 403, 829
Bse1I	ACTGG	2 cut(s)	400, 575
BseDI	CCNNGG	3 cut(s)	346, 403, 829
BseGI	GGATG	1 cut(s)	779
BseMII	CTCAG	3 cut(s)	20, 233, 275
BseNI	ACTGG	2 cut(s)	400, 575
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	6 cut(s)	152, 235, 316, 459, 503, 635
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	177, 828
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	2 cut(s)	324, 355
BsiHKCI	CYCGRG	2 cut(s)	323, 877
BslFI	GGGAC	2 cut(s)	116, 550
BsmFI	GGGAC	2 cut(s)	116, 550
BsnI	GGCC	2 cut(s)	177, 828
BsoBI	CYCGRG	2 cut(s)	323, 877
Bsp1286I	GDGCHC	2 cut(s)	324, 355
Bsp143I	GATC	1 cut(s)	334
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	3 cut(s)	346, 403, 829
BspACI	CCGC	3 cut(s)	359, 699, 900
BspANI	GGCC	2 cut(s)	177, 828
BspCNI	CTCAG	3 cut(s)	19, 232, 274
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	2 cut(s)	306, 493
BspMI	ACCTGC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	400, 575
BssECI	CCNNGG	3 cut(s)	346, 403, 829
BssMI	GATC	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	3 cut(s)	346, 403, 829
Bst2BI	CACGAG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	529, 596
Bst6I	CTCTTC	2 cut(s)	285, 435
BstAPI	GCANNNNNTGC	2 cut(s)	257, 497
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	212, 246, 826
BstDEI	CTNAG	4 cut(s)	6, 219, 261, 689
BstDSI	CCRYGG	3 cut(s)	346, 403, 829
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	779
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 174, 257, 488, 497, 762, 825
BstPI	GGTNACC	1 cut(s)	424
BstSFI	CTRYAG	3 cut(s)	302, 489, 741
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	6 cut(s)	152, 235, 316, 459, 503, 635
BstV2I	GAAGAC	1 cut(s)	597
BsuRI	GGCC	2 cut(s)	177, 828
BtgI	CCRYGG	3 cut(s)	346, 403, 829
BtrI	CACGTC	1 cut(s)	706
BtsCI	GGATG	1 cut(s)	779
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	3 cut(s)	212, 246, 826
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	448
CseI	GACGC	1 cut(s)	131
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviAII	CATG	6 cut(s)	160, 347, 404, 696, 736, 830
DdeI	CTNAG	4 cut(s)	6, 219, 261, 689
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	285, 435
EarI	CTCTTC	2 cut(s)	285, 435
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	3 cut(s)	346, 403, 829
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	2 cut(s)	323, 877
Eco91I	GGTNACC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	346, 403, 829
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	3 cut(s)	346, 403, 829
FaeI	CATG	6 cut(s)	163, 350, 407, 699, 739, 833
FaiI	YATR	9 cut(s)	75, 161, 255, 348, 405, 435, 697, 737, 831
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	2 cut(s)	116, 550
FatI	CATG	6 cut(s)	159, 346, 403, 695, 735, 829
FauI	CCCGC	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	6 cut(s)	166, 249, 305, 473, 492, 649
FokI	GGATG	1 cut(s)	786
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	6 cut(s)	166, 249, 305, 473, 492, 649
FspBI	CTAG	2 cut(s)	68, 315
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	6 cut(s)	166, 249, 305, 473, 492, 649
GsaI	CCCAGC	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	177, 828
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	6 cut(s)	163, 350, 407, 699, 739, 833
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	3 cut(s)	37, 418, 805
Hpy166II	GTNNAC	2 cut(s)	353, 796
Hpy188I	TCNGA	4 cut(s)	9, 222, 453, 645
Hpy188III	TCNNGA	5 cut(s)	235, 536, 623, 842, 879
Hpy8I	GTNNAC	2 cut(s)	353, 796
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	79, 486, 525, 533
HpyCH4III	ACNGT	2 cut(s)	529, 596
HpyCH4IV	ACGT	2 cut(s)	180, 705
HpyCH4V	TGCA	5 cut(s)	251, 304, 353, 491, 651
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 174, 257, 488, 497, 762, 825
HpyF3I	CTNAG	4 cut(s)	6, 219, 261, 689
HpySE526I	ACGT	2 cut(s)	180, 705
Hsp92II	CATG	6 cut(s)	163, 350, 407, 699, 739, 833
HspAI	GCGC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	499, 517
Lsp1109I	GCAGC	6 cut(s)	152, 235, 316, 459, 503, 635
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	68, 315
MaeII	ACGT	2 cut(s)	180, 705
MaeIII	GTNAC	4 cut(s)	297, 424, 655, 701
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	324, 355
MlsI	TGGCCA	1 cut(s)	828
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	3 cut(s)	140, 153, 420
Msp20I	TGGCCA	1 cut(s)	828
MwoI	GCNNNNNNNGC	7 cut(s)	10, 174, 257, 488, 497, 762, 825
NcoI	CCATGG	3 cut(s)	346, 403, 829
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	6 cut(s)	163, 350, 407, 699, 739, 833
NlaIV	GGNNCC	1 cut(s)	409
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	2 cut(s)	424, 701
PaeR7I	CTCGAG	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	496
PkrI	GCNGC	6 cut(s)	167, 250, 306, 474, 493, 650
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	409
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	2 cut(s)	306, 493
PstNI	CAGNNNCTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	140, 153, 420
SatI	GCNGC	6 cut(s)	166, 249, 305, 473, 492, 649
Sau3AI	GATC	1 cut(s)	334
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	324, 355
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	3 cut(s)	302, 489, 741
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SsiI	CCGC	3 cut(s)	359, 699, 900
SspMI	CTAG	2 cut(s)	68, 315
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	3 cut(s)	346, 403, 829
TaaI	ACNGT	2 cut(s)	529, 596
TaiI	ACGT	2 cut(s)	183, 708
TaqI	TCGA	3 cut(s)	120, 204, 324
Tru1I	TTAA	3 cut(s)	140, 153, 420
Tru9I	TTAA	3 cut(s)	140, 153, 420
TscAI	CASTG	1 cut(s)	909
TseFI	GTSAC	2 cut(s)	424, 701
TseI	GCWGC	6 cut(s)	165, 248, 304, 472, 491, 648
Tsp45I	GTSAC	2 cut(s)	424, 701
TspDTI	ATGAA	6 cut(s)	139, 450, 473, 606, 684, 724
TspRI	CASTG	1 cut(s)	909
VneI	GTGCAC	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	2 cut(s)	68, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.