Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009375

Physical Location & Seq

Genomic Coordinates Reverse (-)

22798035 .. 22801416

Gene Structure 3382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAGAAACAATTTCGTCCCTATAATTCTCTCCTTCATCATCTTCTTGACTCCATCAATCGCAGAACAAGAACCTTCAATTCTTTCTCCCGTCGATCAACTCCTCAACAAAACAAGCTCATACCTCGATTTTTCAACAAAATTCAACCAACCAAGAATCGAACTAACAACATCAACGATCATCGCCGGCTTACTCTCTTTCCTAGCTTCATCAATCTCAAGCGCCGGTGGAATCGGCGGTGGAGGTTTATATGTTCCGATAATGACAATCGTGGCCGGTCTCGATCTAAAGACAGCTTCAAGCTTCTCAGCTTTTATGGTTACTGGTGGATCTATAGCTAACGTGGGATGCAATCTATTCGTTAGAAACCCTAAATCTGGTGGCAAAACCCTAATCGACTTCGATTTAGCTCTTTTATTGGAACCATGTATGCTTCTTGGAGTTAGTATTGGTGTGATCTGTAATCTTGTTTTTCCGAACTGGTTGATTACGAGTCTCTTCGCTGTGTTTCTTGCGTGGTCGACGTTGAAGACTTTTGGAAATGGACTTTATTATTGGAGATTGGAATCGGAGATGGTGAAGATTAGAGAATCGAATAGAATTGAAGAAGATGATGAAGAAGATAAGATTGAGAGTCTAAAGTTGCCTCTCTTGGAGGATTATCAGAGACCAAAGAGGTTTCCATGGATTAAGCTTGGAGTTTTGGTCATTATTTGGCTTTCTTACTTCGCAGTTTATCTTCTTCGAGGAAACAAATATGGCGAGGGAATCATATCGATCGAGCCATGTGGAAACGCCTACTGGCTCATTTCATCGTCTCAAATACCACTAACTCTCTTCTTCACTCTCTGGATCTGCTTCAGTGACAATGTTCAAAGCCAACAACAATCAGATTACCATGTCTCAGTAAAGGATGTAGAAGATTTGAGATCAAATGATGGAGCAAGATCAAACAAGTGTATGTTCCCTGTAATGGCTCTATTAGCTGGAGTTTTGGGTGGTGTTTTTGGTATTGGAGGTGGAATGCTCATTAGTCCTCTTCTTCTCCAAGTTGGTATCGCTCCCGAGGTAACTGCAGCGACATGTTCTTTCATGGTTCTTTTTTCATCAACGATGTCTGCGATTCAATACTTATTACTAGGCATGGAACATACCGGAACCGCAAGTATATTTGCGGTTATATGTTTTGTGGCATCACTCGTGGGACTAAAGGTGGTTCAAAAGGTAATAACCGAGTATGGAAGGGCTTCGATCATTGTGTTCTCGGTTGGTATCGTCATGGCATTGAGTATTGTGTTGATGACAAGCTATGGAGCTCTTGATGTTTGGAATGATTATGTCTCTGGTCGTTACATGGGTTTCAAGTTACCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

458

Amino Acids

50.07

Weight (kDa)

5.28

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	53 - 177	2e-10	Sulfite exporter TauE/SafE
TauE	PF01925	275 - 428	3.7e-12	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11540 AT1G11540 AT1G61740 AT4G21250 AT4G21260
fragaria_vesca	FvH4_3g02900 FvH4_3g02900
malus_domestica	MD05G1336700.v1.1
prunus_persica	Prupe.4G028900_v2.0.a1
pyrus_communis	pycom05g30810 pycom05g30830
rosa_chinensis	RchiOBHm_Chr5g0004461
rosa_laevigata	RLG00000031230
rosa_multiflora	Rmu_sc0000433.1_g000002 Rmu_sc0002453.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071060
rosa_rugosa	Rorug04G0411900
rosa_samantha	Rh5AG039500 Rh5BG038500 Rh5CG042600 Rh5DG038300
rosa_wichuraiana	Rw5G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	521
AciI	CCGC	3 cut(s)	237, 1161, 1175
AclWI	GGATC	2 cut(s)	337, 860
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	844
AfiI	CCNNNNNNNGG	2 cut(s)	377, 973
AflIII	ACRYGT	1 cut(s)	1082
Alw21I	GWGCWC	1 cut(s)	1318
Alw26I	GTCTC	6 cut(s)	284, 500, 661, 822, 907, 1345
AlwI	GGATC	2 cut(s)	337, 860
Ama87I	CYCGRG	1 cut(s)	1064
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	1076
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	1246
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	1064
BanII	GRGCYC	1 cut(s)	1318
BauI	CACGAG	1 cut(s)	1199
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	1318
BbvI	GCAGC	1 cut(s)	1088
BccI	CCATC	3 cut(s)	61, 568, 932
BcgI	CGANNNNNNTGC	4 cut(s)	340, 374, 1055, 1089
BcoDI	GTCTC	6 cut(s)	284, 500, 661, 822, 907, 1345
BfaI	CTAG	2 cut(s)	203, 1139
BfmI	CTRYAG	2 cut(s)	333, 1074
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	1 cut(s)	1077
BlsI	GCNGC	1 cut(s)	1078
BmeT110I	CYCGRG	1 cut(s)	1064
BmiI	GGNNCC	2 cut(s)	423, 1159
BmsI	GCATC	2 cut(s)	338, 1202
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	1008
BpuEI	CTTGAG	1 cut(s)	202
Bsa29I	ATCGAT	1 cut(s)	776
BsaBI	GATNNNNATC	1 cut(s)	565
BsaI	GGTCTC	2 cut(s)	284, 661
BsaJI	CCNNGG	2 cut(s)	683, 1065
BsaWI	WCCGGW	1 cut(s)	1154
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 973
Bse118I	RCCGGY	3 cut(s)	185, 224, 275
Bse1I	ACTGG	3 cut(s)	328, 485, 806
Bse8I	GATNNNNATC	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	683, 1065
BseGI	GGATG	2 cut(s)	353, 919
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	377, 973
BseMII	CTCAG	2 cut(s)	321, 918
BseNI	ACTGG	3 cut(s)	328, 485, 806
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	1088
Bsh1285I	CGRYCG	1 cut(s)	780
BshFI	GGCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	776
BsiEI	CGRYCG	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	1318
BsiHKCI	CYCGRG	1 cut(s)	1064
BsiSI	CCGG	4 cut(s)	186, 225, 276, 1155
BslFI	GGGAC	2 cut(s)	2, 1218
BslI	CCNNNNNNNGG	2 cut(s)	377, 973
BsmAI	GTCTC	6 cut(s)	284, 500, 661, 822, 907, 1345
BsmBI	CGTCTC	1 cut(s)	822
BsmFI	GGGAC	2 cut(s)	2, 1218
BsmI	GAATGC	1 cut(s)	1029
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	2 cut(s)	284, 661
BsoBI	CYCGRG	1 cut(s)	1064
Bsp1286I	GDGCHC	1 cut(s)	1318
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	3 cut(s)	237, 1161, 1175
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	320, 917
BspDI	ATCGAT	1 cut(s)	776
BspLI	GGNNCC	2 cut(s)	423, 1159
BspMAI	CTGCAG	1 cut(s)	1078
BspPI	GGATC	2 cut(s)	337, 860
BspTNI	GGTCTC	2 cut(s)	284, 661
BsrFI	RCCGGY	3 cut(s)	185, 224, 275
BsrI	ACTGG	3 cut(s)	328, 485, 806
BssAI	RCCGGY	3 cut(s)	185, 224, 275
BssECI	CCNNGG	2 cut(s)	683, 1065
BssSI	CACGAG	1 cut(s)	1199
BssT1I	CCWWGG	1 cut(s)	683
Bst2BI	CACGAG	1 cut(s)	1199
Bst6I	CTCTTC	3 cut(s)	503, 842, 1044
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	307, 904
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	2 cut(s)	353, 919
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstMAI	GTCTC	6 cut(s)	284, 500, 661, 822, 907, 1345
BstMCI	CGRYCG	1 cut(s)	780
BstMWI	GCNNNNNNNGC	1 cut(s)	983
BstNSI	RCATGY	1 cut(s)	1086
BstSFI	CTRYAG	2 cut(s)	333, 1074
BstV1I	GCAGC	1 cut(s)	1088
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	329, 852
BstYI	RGATCY	2 cut(s)	329, 852
Bsu15I	ATCGAT	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	776
BtgI	CCRYGG	1 cut(s)	683
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	353, 919
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	3 cut(s)	185, 224, 275
ClaI	ATCGAT	1 cut(s)	776
CviAII	CATG	9 cut(s)	426, 684, 786, 899, 1083, 1093, 1144, 1279, 1354
DdeI	CTNAG	2 cut(s)	307, 904
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	3 cut(s)	503, 842, 1044
EarI	CTCTTC	3 cut(s)	503, 842, 1044
Ecl136II	GAGCTC	1 cut(s)	1316
Eco130I	CCWWGG	1 cut(s)	683
Eco24I	GRGCYC	1 cut(s)	1318
Eco31I	GGTCTC	2 cut(s)	284, 661
Eco53kI	GAGCTC	1 cut(s)	1316
Eco57I	CTGAAG	1 cut(s)	844
Eco88I	CYCGRG	1 cut(s)	1064
EcoICRI	GAGCTC	1 cut(s)	1316
EcoT14I	CCWWGG	1 cut(s)	683
EcoT38I	GRGCYC	1 cut(s)	1318
ErhI	CCWWGG	1 cut(s)	683
Esp3I	CGTCTC	1 cut(s)	822
FaeI	CATG	9 cut(s)	429, 687, 789, 902, 1086, 1096, 1147, 1282, 1357
FaqI	GGGAC	2 cut(s)	2, 1218
FatI	CATG	9 cut(s)	425, 683, 785, 898, 1082, 1092, 1143, 1278, 1353
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	1 cut(s)	1077
FokI	GGATG	2 cut(s)	360, 926
FriOI	GRGCYC	1 cut(s)	1318
Fsp4HI	GCNGC	1 cut(s)	1077
FspBI	CTAG	2 cut(s)	203, 1139
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	1077
GsuI	CTGGAG	1 cut(s)	1008
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	4 cut(s)	186, 225, 276, 1155
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	9 cut(s)	429, 687, 789, 902, 1086, 1096, 1147, 1282, 1357
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	2 cut(s)	301, 692
HinfI	GANTC	9 cut(s)	49, 156, 231, 493, 566, 590, 634, 768, 1123
HpaII	CCGG	4 cut(s)	186, 225, 276, 1155
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	5 cut(s)	258, 477, 571, 666, 892
Hpy188III	TCNNGA	5 cut(s)	46, 281, 850, 1064, 1319
Hpy8I	GTNNAC	1 cut(s)	522
Hpy99I	CGWCG	2 cut(s)	95, 526
HpyAV	CCTTC	3 cut(s)	43, 84, 1236
HpyCH4IV	ACGT	2 cut(s)	342, 524
HpyCH4V	TGCA	2 cut(s)	351, 1076
HpyF10VI	GCNNNNNNNGC	1 cut(s)	983
HpyF3I	CTNAG	2 cut(s)	307, 904
HpySE526I	ACGT	2 cut(s)	342, 524
Hsp92II	CATG	9 cut(s)	429, 687, 789, 902, 1086, 1096, 1147, 1282, 1357
HspAI	GCGC	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
LmnI	GCTCC	3 cut(s)	941, 1066, 1313
Lsp1109I	GCAGC	1 cut(s)	1088
LweI	GCATC	2 cut(s)	338, 1202
MaeI	CTAG	2 cut(s)	203, 1139
MaeII	ACGT	2 cut(s)	342, 524
MaeIII	GTNAC	5 cut(s)	319, 863, 1069, 1349, 1365
MflI	RGATCY	2 cut(s)	329, 852
MhlI	GDGCHC	1 cut(s)	1318
MluCI	AATT	5 cut(s)	10, 24, 78, 140, 600
MlyI	GAGTC	3 cut(s)	43, 502, 643
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	1246
MseI	TTAA	1 cut(s)	690
MspI	CCGG	4 cut(s)	186, 225, 276, 1155
Mva1269I	GAATGC	1 cut(s)	1029
MwoI	GCNNNNNNNGC	1 cut(s)	983
NaeI	GCCGGC	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	683
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	9 cut(s)	429, 687, 789, 902, 1086, 1096, 1147, 1282, 1357
NlaIV	GGNNCC	2 cut(s)	423, 1159
NmuCI	GTSAC	1 cut(s)	863
NspI	RCATGY	1 cut(s)	1086
PciI	ACATGT	1 cut(s)	1082
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PctI	GAATGC	1 cut(s)	1029
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	1246
PfeI	GAWTC	6 cut(s)	156, 231, 566, 590, 768, 1123
PkrI	GCNGC	1 cut(s)	1078
Ple19I	CGATCG	1 cut(s)	780
PleI	GAGTC	3 cut(s)	43, 501, 642
PpsI	GAGTC	3 cut(s)	43, 501, 642
PscI	ACATGT	1 cut(s)	1082
Psp124BI	GAGCTC	1 cut(s)	1318
PspN4I	GGNNCC	2 cut(s)	423, 1159
PstI	CTGCAG	1 cut(s)	1078
PsuI	RGATCY	2 cut(s)	329, 852
PvuI	CGATCG	1 cut(s)	780
SacI	GAGCTC	1 cut(s)	1318
SalI	GTCGAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	1 cut(s)	1077
SchI	GAGTC	3 cut(s)	43, 502, 643
SduI	GDGCHC	1 cut(s)	1318
SfaNI	GCATC	2 cut(s)	338, 1202
SfcI	CTRYAG	2 cut(s)	333, 1074
SgrAI	CRCCGGYG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	5 cut(s)	10, 24, 78, 140, 600
SsiI	CCGC	3 cut(s)	237, 1161, 1175
SspMI	CTAG	2 cut(s)	203, 1139
SstI	GAGCTC	1 cut(s)	1318
StyI	CCWWGG	1 cut(s)	683
TaiI	ACGT	2 cut(s)	345, 527
TasI	AATT	5 cut(s)	10, 24, 78, 140, 600
TfiI	GAWTC	6 cut(s)	156, 231, 566, 590, 768, 1123
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	1 cut(s)	1076
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	6 cut(s)	25, 198, 630, 801, 1081, 1095
TspRI	CASTG	1 cut(s)	868
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	1086
XmiI	GTMKAC	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	1246
XspI	CTAG	2 cut(s)	203, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.