FvH4_3g02900

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009375
Physical Location & Seq
Forward (+)
1546731 .. 1549678
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02900.t2

Sequence Viewer

Length: 1413 bp
ATGATGAAGAACCATAAGGTCGTATTGTTAACTCTATCCCTTTCCATTCTCATTTTCAGTCCTCCTTCCCAAGCAAAACAAACTCAACACATCTCAGATGTCCTTACAATTGACAACCTCCTCAACAACACCTCTGAATGGTTGAACCTCTATAGAAAACCCCATGAAACACAGCTCGAGTTGTCTACACCAGTTGTGGTGGCAGGAGTCCTATGCTTCATAGCTGCCTCTATATCCAGTGCTGGTGGAATTGGCGGTGGTGGGTTGTTCATACCAATACTGACCTTAGTGGCACGTCTGGACCTCAGAACAGCCTCTAGTCTCTCAGCTTTCATGGTCACCGGGGGTTCGGTCGCGAATGTCATGTACAACTTGTGCATCAAAGGTAGCACAAAATTTGGTGGCAAGTCTCTGATTGATTATGACATAGCACTTTTATCAGAGCCATGCATGTTACTAGGAGTGAGTCTAGGAGTGATTTGCAACCTTGTGTTCCCAGAGTGGCTGATCACCATACTCTTTGCACTCTTTCTTGCTTGGACTACCTCAATGAGTGGTAGAAATGGGATGGCGCACTGGAAAATAGAGTCACGAGAGCTAGAGATGAGGAATGGTTGTGAGACACTGGAAAATGGGGTCACGAAAGACGAGGGAGGCGATGAAACAGAAGAGAACATAGGTGGTACAGAACCGCTTTTAGGTGTAGATACACAAGAGAGCTGCATGCTAAGATTTCCATGGATGAAAATGGGGATCTTGGTTCTGGTTTGGTGCTCGTTCTGCCTAGTCTATCTTCTTCGTGGCAATCGATATGCGAAGGGAATTACAGCAATAGAGCCTTGTGGAGTGGGATATTGGGTTCTCTCATCTCTCCAGATTCCTCTTGCAATAGTTTACACAGCCTGGATTGTATGCAGAAAAGAAAACCATCAACACCAAACTTCAAACCAAAAGAATATTGAGGAGCTGACTAAAGTTGAACCATTAAACAAGCTAGTTTTCCCACTAATGGCACTATTAGCAGGGATATTAGGGGGTGTCTTTGGGATTGGAGGAGGAATGCTCATAAGCCCTCTTCTTCTTCAGGTTGGAATAGCACCTGAGGTAACGGCTGCGACTTGCTGTTTCATGGTGTTTTTCTCATCTTCCATGTCCGCATTTCAGTACTTGCTCTTGGGCATAGAGCATGTAGATACTGCACTCATATTCGCCGTCGCTTGTTTTGTTGCCTCACTTCTTGGACTGGTAGTGCTGCAGAGAGCAATCAAAGTTTATGGAAGGGCTTCTCTCATTGTATTCTCAGTCAGCATAGTGATGGCTTTGAGTACAGTTTTGATGACAACCTTTGGGGTCCTTCATGTATGGAGTGACTATAAATCTGGAAGATATATGGGCTTCAAACCACCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

471

Amino Acids

51.12

Weight (kDa)

6.46

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 45 - 181 4.9e-10 Sulfite exporter TauE/SafE
TauE PF01925 336 - 443 2.2e-13 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 185
AccII CGCG 1 cut(s) 356
AciI CCGC 3 cut(s) 255, 692, 1155
AclWI GGATC 1 cut(s) 761
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 1067
AfaI GTAC 4 cut(s) 368, 685, 1166, 1327
AfiI CCNNNNNNNGG 3 cut(s) 138, 698, 1009
AgsI TTSAA 4 cut(s) 145, 945, 980, 1399
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 902
AloI GAACNNNNNNTCC 2 cut(s) 843, 875
AluBI AGCT 7 cut(s) 175, 224, 329, 598, 720, 967, 994
AluI AGCT 7 cut(s) 175, 224, 329, 598, 720, 967, 994
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 3 cut(s) 326, 414, 614
AlwI GGATC 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 224, 720, 1112, 1252
ApoI RAATTY 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 1282
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 2 cut(s) 301, 1351
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 331, 502
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 2 cut(s) 301, 1351
AxyI CCTNAGG 1 cut(s) 1101
BauI CACGAG 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 776
BbvI GCAGC 4 cut(s) 211, 707, 1099, 1239
BccI CCATC 3 cut(s) 562, 936, 1309
BceAI ACGGC 2 cut(s) 1125, 1196
BciT130I CCWGG 1 cut(s) 904
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 326, 414, 614
BfaI CTAG 6 cut(s) 318, 458, 470, 599, 785, 995
BfmI CTRYAG 2 cut(s) 151, 1253
BisI GCNGC 4 cut(s) 225, 721, 1113, 1253
BlsI GCNGC 4 cut(s) 226, 722, 1114, 1254
BmcAI AGTACT 1 cut(s) 1166
Bme1390I CCNGG 2 cut(s) 343, 904
Bme18I GGWCC 2 cut(s) 301, 1351
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 301, 1351
BmiI GGNNCC 1 cut(s) 1352
BmrFI CCNGG 2 cut(s) 343, 904
BmsI GCATC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 1047, 1079
BpmI CTGGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 342, 737
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 698, 1009
Bse1I ACTGG 5 cut(s) 191, 237, 581, 630, 1248
Bse21I CCTNAGG 1 cut(s) 1101
BseBI CCWGG 1 cut(s) 904
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 2 cut(s) 342, 737
BseGI GGATG 2 cut(s) 573, 747
BseLI CCNNNNNNNGG 3 cut(s) 138, 698, 1009
BseMII CTCAG 5 cut(s) 108, 319, 339, 1092, 1314
BseNI ACTGG 5 cut(s) 191, 237, 581, 630, 1248
BseRI GAGGAG 3 cut(s) 110, 977, 1068
BseXI GCAGC 4 cut(s) 211, 707, 1099, 1239
BsgI GTGCAG 1 cut(s) 1182
Bsh1236I CGCG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 808
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 776
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 3 cut(s) 138, 698, 1009
BsmAI GTCTC 3 cut(s) 326, 414, 614
BsmI GAATGC 1 cut(s) 1065
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 776
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 2 cut(s) 507, 753
Bsp19I CCATGG 1 cut(s) 737
Bsp68I TCGCGA 1 cut(s) 356
BspACI CCGC 3 cut(s) 255, 692, 1155
BspCNI CTCAG 5 cut(s) 107, 318, 338, 1093, 1313
BspDI ATCGAT 1 cut(s) 808
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 1352
BspMAI CTGCAG 1 cut(s) 1257
BspPI GGATC 1 cut(s) 761
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 5 cut(s) 191, 237, 581, 630, 1248
BssECI CCNNGG 2 cut(s) 342, 737
BssMI GATC 2 cut(s) 507, 753
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 737
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 1 cut(s) 1330
Bst6I CTCTTC 2 cut(s) 663, 1080
BstAUI TGTACA 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 725
BstDEI CTNAG 7 cut(s) 94, 286, 305, 325, 728, 1101, 1300
BstDSI CCRYGG 1 cut(s) 737
BstEII GGTNACC 1 cut(s) 337
BstF5I GGATG 2 cut(s) 573, 747
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 2 cut(s) 510, 756
BstMAI GTCTC 3 cut(s) 326, 414, 614
BstMBI GATC 2 cut(s) 507, 753
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 780, 1019
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 3 cut(s) 454, 727, 1190
BstPI GGTNACC 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 341, 902
BstSFI CTRYAG 2 cut(s) 151, 1253
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 4 cut(s) 211, 707, 1099, 1239
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
Bsu15I ATCGAT 1 cut(s) 808
Bsu36I CCTNAGG 1 cut(s) 1101
BsuTUI ATCGAT 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 737
BtgZI GCGATG 1 cut(s) 672
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 2 cut(s) 573, 747
BtsIMutI CAGTG 3 cut(s) 244, 574, 623
BtuMI TCGCGA 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 725
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 301, 1351
ClaI ATCGAT 1 cut(s) 808
Csp6I GTAC 4 cut(s) 367, 684, 1165, 1326
CviQI GTAC 4 cut(s) 367, 684, 1165, 1326
DdeI CTNAG 7 cut(s) 94, 286, 305, 325, 728, 1101, 1300
DpnI GATC 2 cut(s) 509, 755
DpnII GATC 2 cut(s) 507, 753
Eam1104I CTCTTC 2 cut(s) 663, 1080
EarI CTCTTC 2 cut(s) 663, 1080
Eco130I CCWWGG 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 301, 1351
Eco57I CTGAAG 1 cut(s) 1067
Eco81I CCTNAGG 1 cut(s) 1101
Eco88I CYCGRG 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 1351
EcoO65I GGTNACC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 1 cut(s) 737
EcoT22I ATGCAT 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 737
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 4 cut(s) 225, 721, 1113, 1253
FokI GGATG 2 cut(s) 580, 754
Fsp4HI GCNGC 4 cut(s) 225, 721, 1113, 1253
FspBI CTAG 6 cut(s) 318, 458, 470, 599, 785, 995
GlaI GCGC 1 cut(s) 573
GluI GCNGC 4 cut(s) 225, 721, 1113, 1253
GsuI CTGGAG 1 cut(s) 857
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 574
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 4 cut(s) 207, 466, 587, 877
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 331, 502
Hpy166II GTNNAC 3 cut(s) 30, 186, 895
Hpy188I TCNGA 5 cut(s) 97, 136, 308, 414, 442
Hpy188III TCNNGA 6 cut(s) 299, 355, 591, 640, 874, 1380
Hpy8I GTNNAC 3 cut(s) 30, 186, 895
Hpy99I CGWCG 1 cut(s) 1217
HpyAV CCTTC 4 cut(s) 75, 811, 1272, 1364
HpyCH4III ACNGT 1 cut(s) 1330
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 9 cut(s) 378, 450, 483, 524, 723, 887, 915, 1199, 1255
HpyF10VI GCNNNNNNNGC 2 cut(s) 780, 1019
HpyF3I CTNAG 7 cut(s) 94, 286, 305, 325, 728, 1101, 1300
HpySE526I ACGT 1 cut(s) 295
HspAI GCGC 1 cut(s) 572
Ksp22I TGATCA 1 cut(s) 507
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 507, 753
LmnI GCTCC 1 cut(s) 964
Lsp1109I GCAGC 4 cut(s) 211, 707, 1099, 1239
LweI GCATC 1 cut(s) 387
MaeI CTAG 6 cut(s) 318, 458, 470, 599, 785, 995
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 6 cut(s) 337, 453, 588, 637, 1105, 1367
MalI GATC 2 cut(s) 509, 755
MboI GATC 2 cut(s) 507, 753
MboII GAAGA 9 cut(s) 19, 680, 785, 788, 1067, 1070, 1073, 1137, 1395
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 4 cut(s) 108, 249, 395, 822
MlyI GAGTC 3 cut(s) 216, 475, 596
MmeI TCCRAC 1 cut(s) 1069
Mph1103I ATGCAT 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 1282
MseI TTAA 3 cut(s) 29, 986, 1411
MslI CAYNNNNRTG 1 cut(s) 1313
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 2 cut(s) 343, 904
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 780, 1019
NciI CCSGG 1 cut(s) 343
NcoI CCATGG 1 cut(s) 737
NdeII GATC 2 cut(s) 507, 753
NlaIV GGNNCC 1 cut(s) 1352
NmuCI GTSAC 4 cut(s) 337, 588, 637, 1367
NruI TCGCGA 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 452
NspI RCATGY 3 cut(s) 454, 727, 1190
PaeI GCATGC 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 654, 805
PctI GAATGC 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 1282
PfeI GAWTC 1 cut(s) 877
PkrI GCNGC 4 cut(s) 226, 722, 1114, 1254
PleI GAGTC 3 cut(s) 215, 474, 595
PpsI GAGTC 3 cut(s) 215, 474, 595
PpuMI RGGWCCY 1 cut(s) 1351
Psp5II RGGWCCY 1 cut(s) 1351
Psp6I CCWGG 1 cut(s) 902
PspEI GGTNACC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 1 cut(s) 1352
PspPI GGNCC 2 cut(s) 301, 1351
PspPPI RGGWCCY 1 cut(s) 1351
PspXI VCTCGAGB 1 cut(s) 176
PstI CTGCAG 1 cut(s) 1257
PsuI RGATCY 1 cut(s) 753
RruI TCGCGA 1 cut(s) 356
RsaI GTAC 4 cut(s) 368, 685, 1166, 1327
RsaNI GTAC 4 cut(s) 367, 684, 1165, 1326
RseI CAYNNNNRTG 1 cut(s) 1313
SaqAI TTAA 3 cut(s) 29, 986, 1411
SatI GCNGC 4 cut(s) 225, 721, 1113, 1253
Sau3AI GATC 2 cut(s) 507, 753
Sau96I GGNCC 2 cut(s) 301, 1351
ScaI AGTACT 1 cut(s) 1166
SchI GAGTC 3 cut(s) 216, 475, 596
ScrFI CCNGG 2 cut(s) 343, 904
SduI GDGCHC 1 cut(s) 776
SfaNI GCATC 1 cut(s) 387
SfcI CTRYAG 2 cut(s) 151, 1253
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 2 cut(s) 301, 1351
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 1313
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SphI GCATGC 1 cut(s) 727
Sse9I AATT 4 cut(s) 108, 249, 395, 822
SsiI CCGC 3 cut(s) 255, 692, 1155
SspI AATATT 1 cut(s) 958
SspMI CTAG 6 cut(s) 318, 458, 470, 599, 785, 995
StyD4I CCNGG 2 cut(s) 341, 902
StyI CCWWGG 1 cut(s) 737
TaaI ACNGT 1 cut(s) 1330
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 177, 808
TaqII GACCGA 1 cut(s) 340
TasI AATT 4 cut(s) 108, 249, 395, 822
TatI WGTACW 3 cut(s) 366, 1164, 1325
TfiI GAWTC 1 cut(s) 877
Tru1I TTAA 3 cut(s) 29, 986, 1411
Tru9I TTAA 3 cut(s) 29, 986, 1411
TscAI CASTG 3 cut(s) 244, 581, 630
TseFI GTSAC 4 cut(s) 337, 588, 637, 1367
TseI GCWGC 4 cut(s) 224, 720, 1112, 1252
Tsp45I GTSAC 4 cut(s) 337, 588, 637, 1367
TspDTI ATGAA 9 cut(s) 20, 180, 208, 259, 322, 675, 758, 1117, 1346
TspRI CASTG 3 cut(s) 244, 581, 630
VpaK11BI GGWCC 2 cut(s) 301, 1351
XapI RAATTY 1 cut(s) 395
XceI RCATGY 3 cut(s) 454, 727, 1190
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 1282
XspI CTAG 6 cut(s) 318, 458, 470, 599, 785, 995
ZrmI AGTACT 1 cut(s) 1166
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.