Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009375

Physical Location & Seq

Genomic Coordinates Reverse (-)

91986387 .. 91988221

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGAACCGTAAGGTTGTATTGTTAACTCTATCGCTTTCCATCCTCATCACTTCCAATCCTTCCCAAGCAAAACAAACTCAACCCATCTCAGATGTCTTTAGAATTGACAACATGTTCAACAACACCTATGAATGGTTCAGCCTCTATAGAAAACCCCATGAAACCCAGCTCGAGTTGTCTACCCCACTTGTGGTGGCAGGAATCTTGTGCTTCATAGCTGCCTCTATATCCAGTGCTGGTGGGATTGGTGGTGGTGGGTTGTTCATACCAATACTGACCCTAGTGGCAGGTCTTGATCTCAGAATAGCCTCTAGTCTCTCAGCTTTCATGGTCACCGGAGGCTCGGTCGCGAATGTCATGTACAACTTGTGCATCAAAGGTAGCACCAAATTTGGTGTCAAGTCTCTGATTGACTATGACATAGCACTTCTATCAGAACCATGTATGTTACTAGGAGTGAGTCTAGGAGTGATTTGCAACCTTGTATTCCCAGAGTGGCTGATCACTGTACTCTTTGCGCTTTTCCTTGTTTGGACTACCTCAATGAGCTGTAGAAATGGGCTGGTGTACTGGAAAATGGAATCAGAAGTGATGAAGATGAGGAATGGTTGTGAGAGACTGGAAAATGGGTTGACGAAAGACGGGGCAGGCGATGAAACAGAAGGGAACAGAGGGGTTGCAGAACCGCTTTTAGGAGTAAGAACAGAAGAAAACTGCATGCTAAGATTTCCATGGATGAAAATGGGGGTATTAATTCTGGTCTGGTGCTCTTTCTGCCTAGTCTACCTTCTTCGTGGCAATCGATATGGACAGGGCATTATACCAATAGAGCCTTGTGGAGTGGGATATTGGGTTCTCTCAGCTTCCCAAATTCCTCTTGCCATAGTTTATACAGCCTGGATTCTGTGCAGAAAAGAGAATCCTCAACATCATACTTTAAACACCCAAAAGGATATTGAGGATCTGAACAAAGTTGGACCATCAAACAAGCTAGTTTTCCCACTAATGGCACTAGTAGCAGGGATTTTAGGGGGTGTCTTTGGGATTGGAGGTGGAATGCTGATAAGCCCTCTTCTTCTTCAGGTTGGGATAGCGCCTGAGACACTGCGCTCATCTTCGCCATCACTTGTTTTGTTGCATCACTTCTTGGACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

386

Amino Acids

42.25

Weight (kDa)

7.5

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	54 - 180	6e-11	Sulfite exporter TauE/SafE
TauE	PF01925	294 - 369	2.7e-06	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11540 AT1G11540 AT1G61740 AT4G21250 AT4G21260
fragaria_vesca	FvH4_3g02900 FvH4_3g02900
malus_domestica	MD05G1336700.v1.1
prunus_persica	Prupe.4G028900_v2.0.a1
pyrus_communis	pycom05g30810 pycom05g30830
rosa_chinensis	RchiOBHm_Chr5g0004461
rosa_laevigata	RLG00000031230
rosa_multiflora	Rmu_sc0000433.1_g000002 Rmu_sc0002453.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071060
rosa_rugosa	Rorug04G0411900
rosa_samantha	Rh5AG039500 Rh5BG038500 Rh5CG042600 Rh5DG038300
rosa_wichuraiana	Rw5G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	281
AccI	GTMKAC	2 cut(s)	182, 786
AccII	CGCG	1 cut(s)	353
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	972
AcsI	RAATTY	2 cut(s)	392, 873
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	3 cut(s)	365, 513, 572
AfiI	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	121
AhlI	ACTAGT	1 cut(s)	1015
AjnI	CCWGG	1 cut(s)	899
AloI	GAACNNNNNNTCC	2 cut(s)	840, 872
AluBI	AGCT	6 cut(s)	172, 221, 326, 552, 866, 994
AluI	AGCT	6 cut(s)	172, 221, 326, 552, 866, 994
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	4 cut(s)	323, 411, 613, 1097
AlwI	GGATC	1 cut(s)	972
Ama87I	CYCGRG	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	392, 873
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AseI	ATTAAT	1 cut(s)	755
AspLEI	GCGC	3 cut(s)	523, 1099, 1113
AspS9I	GGNCC	1 cut(s)	980
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	4 cut(s)	50, 95, 991, 1132
BciT130I	CCWGG	1 cut(s)	901
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	323, 411, 613, 1097
BcuI	ACTAGT	1 cut(s)	1015
BfaI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1016
BfmI	CTRYAG	2 cut(s)	148, 553
BfoI	RGCGCY	1 cut(s)	1100
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	901
Bme18I	GGWCC	1 cut(s)	980
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	980
BmrFI	CCNGG	1 cut(s)	901
BmsI	GCATC	2 cut(s)	384, 1150
Bsa29I	ATCGAT	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
Bse1I	ACTGG	4 cut(s)	234, 578, 627, 1160
BseBI	CCWGG	1 cut(s)	901
BseCI	ATCGAT	1 cut(s)	805
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	42, 744
BseLI	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
BseMII	CTCAG	5 cut(s)	105, 316, 336, 876, 1092
BseNI	ACTGG	4 cut(s)	234, 578, 627, 1160
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	931
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	351
BshVI	ATCGAT	1 cut(s)	805
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
BsmAI	GTCTC	4 cut(s)	323, 411, 613, 1097
BsmI	GAATGC	1 cut(s)	1065
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	298, 504, 964
Bsp19I	CCATGG	1 cut(s)	734
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	1 cut(s)	689
BspCNI	CTCAG	5 cut(s)	104, 315, 335, 875, 1093
BspDI	ATCGAT	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	353
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	972
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	4 cut(s)	234, 578, 627, 1160
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	3 cut(s)	298, 504, 964
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	901
Bst4CI	ACNGT	2 cut(s)	11, 511
Bst6I	CTCTTC	1 cut(s)	1080
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	652, 722
BstDEI	CTNAG	6 cut(s)	91, 302, 322, 725, 862, 1101
BstDSI	CCRYGG	1 cut(s)	734
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	42, 744
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	1100
BstHHI	GCGC	3 cut(s)	523, 1099, 1113
BstKTI	GATC	3 cut(s)	301, 507, 967
BstMAI	GTCTC	4 cut(s)	323, 411, 613, 1097
BstMBI	GATC	3 cut(s)	298, 504, 964
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	777, 1019
BstNI	CCWGG	1 cut(s)	901
BstNSI	RCATGY	2 cut(s)	118, 724
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	899
BstSFI	CTRYAG	2 cut(s)	148, 553
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
Bsu15I	ATCGAT	1 cut(s)	805
BsuTUI	ATCGAT	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	734
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	42, 744
BtsI	GCAGTG	1 cut(s)	1106
BtsIMutI	CAGTG	3 cut(s)	241, 507, 1106
BtuMI	TCGCGA	1 cut(s)	353
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	652, 722
CfoI	GCGC	3 cut(s)	523, 1099, 1113
Cfr13I	GGNCC	1 cut(s)	980
ClaI	ATCGAT	1 cut(s)	805
Csp6I	GTAC	3 cut(s)	364, 512, 571
CviAII	CATG	7 cut(s)	115, 161, 331, 361, 444, 721, 735
CviQI	GTAC	3 cut(s)	364, 512, 571
DdeI	CTNAG	6 cut(s)	91, 302, 322, 725, 862, 1101
DpnI	GATC	3 cut(s)	300, 506, 966
DpnII	GATC	3 cut(s)	298, 504, 964
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	1080
EarI	CTCTTC	1 cut(s)	1080
Eco130I	CCWWGG	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	1067
Eco88I	CYCGRG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	899
EcoT14I	CCWWGG	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	7 cut(s)	118, 164, 334, 364, 447, 724, 738
FatI	CATG	7 cut(s)	114, 160, 330, 360, 443, 720, 734
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	2 cut(s)	182, 786
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	29, 751
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1016
GlaI	GCGC	3 cut(s)	522, 1098, 1112
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	1100
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	3 cut(s)	523, 1099, 1113
Hin1II	CATG	7 cut(s)	118, 164, 334, 364, 447, 724, 738
Hin6I	GCGC	3 cut(s)	521, 1097, 1111
HinP1I	GCGC	3 cut(s)	521, 1097, 1111
HincII	GTYRAC	2 cut(s)	27, 636
HindII	GTYRAC	2 cut(s)	27, 636
HinfI	GANTC	5 cut(s)	204, 463, 584, 904, 922
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	5 cut(s)	27, 183, 571, 636, 787
Hpy188I	TCNGA	6 cut(s)	94, 305, 411, 439, 589, 969
Hpy188III	TCNNGA	2 cut(s)	296, 352
Hpy8I	GTNNAC	5 cut(s)	27, 183, 571, 636, 787
HpyAV	CCTTC	3 cut(s)	72, 659, 800
HpyCH4III	ACNGT	2 cut(s)	11, 511
HpyCH4V	TGCA	6 cut(s)	375, 480, 683, 720, 912, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	777, 1019
HpyF3I	CTNAG	6 cut(s)	91, 302, 322, 725, 862, 1101
Hsp92II	CATG	7 cut(s)	118, 164, 334, 364, 447, 724, 738
HspAI	GCGC	3 cut(s)	521, 1097, 1111
Ksp22I	TGATCA	1 cut(s)	504
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	298, 504, 964
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	384, 1150
MaeI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1016
MaeIII	GTNAC	2 cut(s)	334, 450
MalI	GATC	3 cut(s)	300, 506, 966
MboI	GATC	3 cut(s)	298, 504, 964
MboII	GAAGA	8 cut(s)	16, 610, 722, 785, 1067, 1070, 1073, 1110
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	1 cut(s)	773
MluCI	AATT	4 cut(s)	105, 392, 756, 873
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	958
MseI	TTAA	3 cut(s)	26, 755, 941
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	901
Mva1269I	GAATGC	1 cut(s)	1065
MvaI	CCWGG	1 cut(s)	901
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	777, 1019
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	3 cut(s)	298, 504, 964
NlaIII	CATG	7 cut(s)	118, 164, 334, 364, 447, 724, 738
NmuCI	GTSAC	1 cut(s)	334
NruI	TCGCGA	1 cut(s)	353
NspI	RCATGY	2 cut(s)	118, 724
PaeI	GCATGC	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	2 cut(s)	651, 802
PctI	GAATGC	1 cut(s)	1065
PfeI	GAWTC	4 cut(s)	204, 584, 904, 922
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
PscI	ACATGT	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	899
PspEI	GGTNACC	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	899
PspPI	GGNCC	1 cut(s)	980
PspXI	VCTCGAGB	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	964
RruI	TCGCGA	1 cut(s)	353
RsaI	GTAC	3 cut(s)	365, 513, 572
RsaNI	GTAC	3 cut(s)	364, 512, 571
SaqAI	TTAA	3 cut(s)	26, 755, 941
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	298, 504, 964
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	901
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	2 cut(s)	384, 1150
SfcI	CTRYAG	2 cut(s)	148, 553
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	980
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SpeI	ACTAGT	1 cut(s)	1015
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	4 cut(s)	105, 392, 756, 873
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1016
StyD4I	CCNGG	1 cut(s)	899
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	11, 511
TaqI	TCGA	2 cut(s)	174, 805
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	4 cut(s)	105, 392, 756, 873
TatI	WGTACW	3 cut(s)	363, 511, 570
TfiI	GAWTC	4 cut(s)	204, 584, 904, 922
Tru1I	TTAA	3 cut(s)	26, 755, 941
Tru9I	TTAA	3 cut(s)	26, 755, 941
TscAI	CASTG	3 cut(s)	241, 514, 1113
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	9 cut(s)	17, 147, 177, 205, 256, 319, 611, 672, 755
TspRI	CASTG	3 cut(s)	241, 514, 1113
VpaK11BI	GGWCC	1 cut(s)	980
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	2 cut(s)	392, 873
XceI	RCATGY	2 cut(s)	118, 724
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	2 cut(s)	182, 786
XspI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.