Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009375

Physical Location & Seq

Genomic Coordinates Forward (+)

30775483 .. 30777341

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30830.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGACAACCAAAAACTCACATGCTTAACTCTTTCCCTTTCAATATTTCTCATCACCTTCACTCATTCACAAGCAAAACAAACTGAACCCATCTCAGATGCCCTCAGAACCGACAACTTCCTCAACCAAACCTACCAACGGCGGACACCCATTGTCCTTGCCGGAATATTCTGCTTCATAGCCGCCTCCATATCAAGTGCCGGCGGAATCGGAGGTGGCGGGCTCTTCATCCCTACACTAGCATTAGTGGCAGGCCTAGACCTCAGAACAGCCTCGAGTCTCTCAGCTTTCATGGTCACAGGAGGGTCAGTTGCAAATGTTATGTACAACTTGTGCATCAAAAGTTCCAAATTTGGAGGCAGAACTCTGATAGATTATGACATAGCTCTTCTATCAGAGCCATGCATGTTGCTCGGAGTGAGCCTTGGAGTGATTTGCAACCTTGTTTTTTCAGAGTGGCTGACTACTATTCTCTTTGCTCTATTTCTTGCTTGGTGTACCTCAAGGAGCTGCAAAAATGGGTTGGTGCGTTCGGAAATGGAGTCAGAAGAGCTGTTGAGGTTGAGAAATGACTGTGAAAATTTGGAGCAAAAGGAAATAGAGGCACCCCTTTTGGAGACAAAGGGAAATTGCAAACTAGGGATTCCATGGACAAAAATGGGGGTCTTTGTTCTGGTTTGGTGCTCTTTCTGCCTCGTCTATCTTCTCCGCGGTAATCGGTATGGACAGGGTATCACACAAATAGAGCCTTGTGGAATGGCTTATTGGGTTCTCTCATCAATCCAAATCCCTCTTGCCATAATCTATACAGTCTGGATGCTATGCACAAAAGAGAACCTTCAACATCGTACTTTAAACCAAAAGGATATTCAGGACCTGCAAAATGTTGGACCATCTAAGCTAGTTTTCCCATTAATGGCACTACTAGCAGGGATTTTGGGGGGTGTTTTTGGGATTGGAAGTGGAATGCTTATAAGCCCCCTTCTTCAAGTTGGGGTAGCACCTGAGGTAACGGTGGCAACTTGTTCATTCATGGTATTCTTCTCGTCTTCCATGTCGGCATTTCAGTACTTGTTACTGGGCATGGAGCATGCAGATACTGCACTCATCTTCTCCATCGTGTGCTTCGTTGCATCACTTCTCGGACTGGTGGTGCTGCAGAGAGCAATCAAAGTGTATGGAAGGGCTTCTCTAATTGTGTTCTCAGTTAGTACAGTGATGGCTTTGAGCACTGTTCTGATGACTACCATTGGGGCTCTTGAAGTGTGGAGAGATTTTGTATCTGGAAATTACATGGGATTCAAACTACCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

439

Amino Acids

47.76

Weight (kDa)

7.38

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11540 AT1G11540 AT1G61740 AT4G21250 AT4G21260
fragaria_vesca	FvH4_3g02900 FvH4_3g02900
malus_domestica	MD05G1336700.v1.1
prunus_persica	Prupe.4G028900_v2.0.a1
pyrus_communis	pycom05g30810 pycom05g30830
rosa_chinensis	RchiOBHm_Chr5g0004461
rosa_laevigata	RLG00000031230
rosa_multiflora	Rmu_sc0000433.1_g000002 Rmu_sc0002453.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071060
rosa_rugosa	Rorug04G0411900
rosa_samantha	Rh5AG039500 Rh5BG038500 Rh5CG042600 Rh5DG038300
rosa_wichuraiana	Rw5G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	974
Acc36I	ACCTGC	1 cut(s)	885
AccB1I	GGYRCC	1 cut(s)	604
AccII	CGCG	1 cut(s)	711
AciI	CCGC	6 cut(s)	142, 183, 204, 219, 709, 711
AcsI	RAATTY	2 cut(s)	350, 580
AfaI	GTAC	5 cut(s)	326, 499, 850, 1070, 1213
AfiI	CCNNNNNNNGG	2 cut(s)	138, 916
AgsI	TTSAA	5 cut(s)	42, 842, 989, 1262, 1303
AjuI	GAANNNNNNNTTGG	4 cut(s)	748, 780, 852, 884
AluBI	AGCT	5 cut(s)	287, 386, 510, 553, 901
AluI	AGCT	5 cut(s)	287, 386, 510, 553, 901
Alw21I	GWGCWC	2 cut(s)	686, 1232
Alw26I	GTCTC	2 cut(s)	284, 611
AlwNI	CAGNNNCTG	2 cut(s)	877, 1100
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	510, 1156
ApoI	RAATTY	2 cut(s)	350, 580
AseI	ATTAAT	1 cut(s)	914
Asp700I	GAANNNNTTC	1 cut(s)	1186
AspS9I	GGNCC	2 cut(s)	874, 890
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	874, 890
AxyI	CCTNAGG	1 cut(s)	1005
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	2 cut(s)	225, 1258
BbsI	GAAGAC	1 cut(s)	1041
Bbv12I	GWGCWC	2 cut(s)	686, 1232
BbvI	GCAGC	2 cut(s)	497, 1143
BccI	CCATC	4 cut(s)	98, 901, 1124, 1213
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BcoDI	GTCTC	2 cut(s)	284, 611
BfaI	CTAG	5 cut(s)	239, 257, 638, 902, 926
BfmI	CTRYAG	1 cut(s)	1157
BfuAI	ACCTGC	1 cut(s)	885
BisI	GCNGC	3 cut(s)	183, 511, 1157
BlsI	GCNGC	3 cut(s)	184, 512, 1158
BmcAI	AGTACT	1 cut(s)	1070
Bme18I	GGWCC	2 cut(s)	874, 890
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	874, 890
BmiI	GGNNCC	1 cut(s)	606
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	4 cut(s)	88, 345, 807, 1142
BmuI	ACTGGG	1 cut(s)	1088
BpiI	GAAGAC	1 cut(s)	1041
BpuEI	CTTGAG	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	424, 647, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 916
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	1083, 1152
Bse21I	CCTNAGG	1 cut(s)	1005
BseDI	CCNNGG	3 cut(s)	424, 647, 709
BseGI	GGATG	2 cut(s)	228, 822
BseLI	CCNNNNNNNGG	2 cut(s)	138, 916
BseMII	CTCAG	6 cut(s)	108, 118, 277, 297, 996, 1218
BseNI	ACTGG	2 cut(s)	1083, 1152
BseXI	GCAGC	2 cut(s)	497, 1143
BsgI	GTGCAG	1 cut(s)	1086
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	604
BsiHKAI	GWGCWC	2 cut(s)	686, 1232
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	162, 201
BslI	CCNNNNNNNGG	2 cut(s)	138, 916
BsmAI	GTCTC	2 cut(s)	284, 611
BsmI	GAATGC	1 cut(s)	972
BsnI	GGCC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	4 cut(s)	225, 686, 1232, 1258
Bsp1407I	TGTACA	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	6 cut(s)	142, 183, 204, 219, 709, 711
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	6 cut(s)	107, 117, 276, 296, 997, 1217
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	1161
BspMI	ACCTGC	1 cut(s)	885
BspQI	GCTCTTC	3 cut(s)	230, 393, 543
BspT107I	GGYRCC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	1083, 1152
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	424, 647, 709
BssT1I	CCWWGG	2 cut(s)	424, 647
Bst4CI	ACNGT	5 cut(s)	575, 811, 1015, 1216, 1234
Bst6I	CTCTTC	3 cut(s)	230, 393, 543
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	202, 221, 253, 1092
BstDEI	CTNAG	7 cut(s)	94, 104, 263, 283, 897, 1005, 1204
BstDSI	CCRYGG	2 cut(s)	647, 709
BstF5I	GGATG	2 cut(s)	228, 822
BstFNI	CGCG	1 cut(s)	711
BstMAI	GTCTC	2 cut(s)	284, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 690, 926, 1100
BstNSI	RCATGY	3 cut(s)	24, 409, 1094
BstSFI	CTRYAG	1 cut(s)	1157
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	2 cut(s)	497, 1143
BstV2I	GAAGAC	1 cut(s)	1041
Bsu36I	CCTNAGG	1 cut(s)	1005
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	647, 709
BtsCI	GGATG	2 cut(s)	228, 822
BtsIMutI	CAGTG	2 cut(s)	1221, 1230
BveI	ACCTGC	1 cut(s)	885
Cac8I	GCNNGC	4 cut(s)	202, 221, 253, 1092
CaiI	CAGNNNCTG	2 cut(s)	877, 1100
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	874, 890
Cfr42I	CCGCGG	1 cut(s)	712
Csp6I	GTAC	5 cut(s)	325, 498, 849, 1069, 1212
CviQI	GTAC	5 cut(s)	325, 498, 849, 1069, 1212
DdeI	CTNAG	7 cut(s)	94, 104, 263, 283, 897, 1005, 1204
DraI	TTTAAA	1 cut(s)	855
Eam1104I	CTCTTC	3 cut(s)	230, 393, 543
EarI	CTCTTC	3 cut(s)	230, 393, 543
EciI	GGCGGA	2 cut(s)	157, 219
Eco130I	CCWWGG	2 cut(s)	424, 647
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	225, 1258
Eco47I	GGWCC	2 cut(s)	874, 890
Eco81I	CCTNAGG	1 cut(s)	1005
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	874
EcoT14I	CCWWGG	2 cut(s)	424, 647
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	2 cut(s)	225, 1258
ErhI	CCWWGG	2 cut(s)	424, 647
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	183, 511, 1157
FokI	GGATG	2 cut(s)	215, 829
FriOI	GRGCYC	2 cut(s)	225, 1258
Fsp4HI	GCNGC	3 cut(s)	183, 511, 1157
FspBI	CTAG	5 cut(s)	239, 257, 638, 902, 926
GluI	GCNGC	3 cut(s)	183, 511, 1157
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	162, 201
HinfI	GANTC	5 cut(s)	207, 277, 542, 643, 1299
HpaII	CCGG	2 cut(s)	162, 201
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188III	TCNNGA	4 cut(s)	814, 872, 1259, 1284
Hpy8I	GTNNAC	1 cut(s)	498
HpyAV	CCTTC	4 cut(s)	67, 848, 992, 1176
HpyCH4III	ACNGT	5 cut(s)	575, 811, 1015, 1216, 1234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 690, 926, 1100
HpyF3I	CTNAG	7 cut(s)	94, 104, 263, 283, 897, 1005, 1204
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	712
LguI	GCTCTTC	3 cut(s)	230, 393, 543
LmnI	GCTCC	3 cut(s)	507, 586, 1087
Lsp1109I	GCAGC	2 cut(s)	497, 1143
LweI	GCATC	4 cut(s)	88, 345, 807, 1142
MaeI	CTAG	5 cut(s)	239, 257, 638, 902, 926
MaeIII	GTNAC	3 cut(s)	295, 1009, 1074
MboII	GAAGA	8 cut(s)	217, 380, 560, 695, 977, 1033, 1041, 1102
MhlI	GDGCHC	4 cut(s)	225, 686, 1232, 1258
MluCI	AATT	5 cut(s)	350, 580, 628, 1194, 1288
MlyI	GAGTC	2 cut(s)	286, 551
MmeI	TCCRAC	1 cut(s)	868
Mph1103I	ATGCAT	1 cut(s)	407
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	1186
MseI	TTAA	4 cut(s)	26, 854, 914, 1315
MspA1I	CMGCKG	1 cut(s)	711
MspI	CCGG	2 cut(s)	162, 201
Mva1269I	GAATGC	1 cut(s)	972
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	4 cut(s)	248, 690, 926, 1100
NaeI	GCCGGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	647
NgoMIV	GCCGGC	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	3 cut(s)	24, 409, 1094
PaeI	GCATGC	1 cut(s)	1094
PaeR7I	CTCGAG	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	255
PciSI	GCTCTTC	3 cut(s)	230, 393, 543
PcsI	WCGNNNNNNNCGW	1 cut(s)	1125
PctI	GAATGC	1 cut(s)	972
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	1186
PfeI	GAWTC	3 cut(s)	207, 643, 1299
PkrI	GCNGC	3 cut(s)	184, 512, 1158
PleI	GAGTC	2 cut(s)	285, 550
PpsI	GAGTC	2 cut(s)	285, 550
PpuMI	RGGWCCY	1 cut(s)	874
PshBI	ATTAAT	1 cut(s)	914
PsiI	TTATAA	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	874
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	2 cut(s)	874, 890
PspPPI	RGGWCCY	1 cut(s)	874
PspXI	VCTCGAGB	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	1161
PstNI	CAGNNNCTG	2 cut(s)	877, 1100
RsaI	GTAC	5 cut(s)	326, 499, 850, 1070, 1213
RsaNI	GTAC	5 cut(s)	325, 498, 849, 1069, 1212
SacII	CCGCGG	1 cut(s)	712
SapI	GCTCTTC	3 cut(s)	230, 393, 543
SaqAI	TTAA	4 cut(s)	26, 854, 914, 1315
SatI	GCNGC	3 cut(s)	183, 511, 1157
Sau96I	GGNCC	2 cut(s)	874, 890
ScaI	AGTACT	1 cut(s)	1070
SchI	GAGTC	2 cut(s)	286, 551
SduI	GDGCHC	4 cut(s)	225, 686, 1232, 1258
SfaNI	GCATC	4 cut(s)	88, 345, 807, 1142
SfcI	CTRYAG	1 cut(s)	1157
Sfr274I	CTCGAG	1 cut(s)	274
Sfr303I	CCGCGG	1 cut(s)	712
SgrBI	CCGCGG	1 cut(s)	712
SinI	GGWCC	2 cut(s)	874, 890
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	274, 502
SmoI	CTYRAG	2 cut(s)	274, 502
SphI	GCATGC	1 cut(s)	1094
Sse9I	AATT	5 cut(s)	350, 580, 628, 1194, 1288
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	6 cut(s)	142, 183, 204, 219, 709, 711
SspI	AATATT	2 cut(s)	45, 168
SspMI	CTAG	5 cut(s)	239, 257, 638, 902, 926
StuI	AGGCCT	1 cut(s)	255
StyI	CCWWGG	2 cut(s)	424, 647
TaaI	ACNGT	5 cut(s)	575, 811, 1015, 1216, 1234
TaqI	TCGA	1 cut(s)	275
TasI	AATT	5 cut(s)	350, 580, 628, 1194, 1288
TatI	WGTACW	3 cut(s)	324, 1068, 1211
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	207, 643, 1299
Tru1I	TTAA	4 cut(s)	26, 854, 914, 1315
Tru9I	TTAA	4 cut(s)	26, 854, 914, 1315
TscAI	CASTG	2 cut(s)	1221, 1237
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	510, 1156
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	5 cut(s)	166, 217, 280, 1017, 1021
TspRI	CASTG	2 cut(s)	1221, 1237
VpaK11BI	GGWCC	2 cut(s)	874, 890
VspI	ATTAAT	1 cut(s)	914
XapI	RAATTY	2 cut(s)	350, 580
XceI	RCATGY	3 cut(s)	24, 409, 1094
XhoI	CTCGAG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	1186
XspI	CTAG	5 cut(s)	239, 257, 638, 902, 926
ZrmI	AGTACT	1 cut(s)	1070
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.