Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009375

Physical Location & Seq

Genomic Coordinates Forward (+)

2897283 .. 2899187

Gene Structure 1905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28569

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGAAGAACCGTAAGGTTGCATTGTTAACTCTATCGCTTTCCATCCTCATCACTTCCAATCCTTCCCAAGCAAAACAAACTCAACCCATCTCAGATGTCTTTAGAATTGACAACATGTTCAACAACACCTATGAATGGTTCAGCCTCTATAGAAAACCCCATGAAACCCAGCTCGAGTTGTCTACCCCACTTGTGGTGGCAGGAATCTTGTGCTTCATAGCTGCCTCTATATCCAGTGCTGGTGGGATTGGTGGTGGTGGGTTGTTCATACCAATACTGACCCTAGTGGCAGGTCTTGATCTCAGAATAGCCTCTAGTCTCTCAGCTTTCATGGTCACCGGAGGCTCGGTCGCGAATGTCATGTACAACTTGTGCATCAAAGGTAGCACCAAATTTGGTGGCAAGTCTCTGATTGACTATGACATAGCACTTCTATCAGAACCATGTATGTTACTAGGAGTGAGTCTAGGAGTGATTTGCAACCTTGTATTCCCAGAGTGGCTGATCACTGTACTCTTTGCGCTTTTCCTTGTTTGGACTACCTCAATGAGCTGTAGAAATGGGCTGGTGTACTGGAAAATGGAATCAGAAGTGATGAAGATGAGGAATGGTTGTGACAGACTGGAAAATGGGTTGACGAAAGACGGGGCAGGCGATGAAACAGAAGGGAACAGAGGGGTTACAGAACCGCTTTTAGGAGTAAGAACAGAAGAAAACTGCATGCTAAGATTTCCATGGATGAAAATGGGGGTATTAATTCTGGTCTGGTGCTCTTTCTGCCTAGTCTACCTTCTTCGTGGCAATCGATATGGACAGGGCATTATACCAATAGAGCCTTGTGGAGTGGGATATTGGGTTCTCTCAGCTTCCCAAATTCCTCTTGCCATAGTTTATACAGTCTGGATTCTGTGCAGAAAAGAGAATCTTCAACATCATACTTTAAACACCCAAAAGGATATTGAGGATCTGAACAAAGTTGGACCATCAAACAAGCTAGTTTTCCCACTAATGGCACTATTAGCAGGGATTTTAGGGGGTGTCTTTGGGATTGGAGGTGGAATGCTTATAAGCCCTCTTCTTCTTCAGGTTGGGATAGCGCCTGAGGTAACGGCTGCGACTTGTTCTTTCATGGTGTTCTTCTCATCTTCCATGTCCGCATTTCAGTACTTATTGTTGGGCATGGAGCACGCAGACACCGCGCTCATCTTCGCCGTCACTTGTTTTGTTGCATCACTTCTTGGACTGGTAGTGCTGCAGAGAGCAATCAAAGTTTATGGAAGGGCTTCTCTCATTGTATTCTCAGTTAGCATAGTGATGGCTTTAAGTACAGTTTTGATGACTAGCTTTGGGGCCCTTCATGTATGGAGTGACTATAAATCTGGAAGATACATGGGCTTCAAACTACCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

470

Amino Acids

51.24

Weight (kDa)

8.32

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	55 - 180	6.1e-11	Sulfite exporter TauE/SafE
TauE	PF01925	296 - 438	9.6e-13	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11540 AT1G11540 AT1G61740 AT4G21250 AT4G21260
fragaria_vesca	FvH4_3g02900 FvH4_3g02900
malus_domestica	MD05G1336700.v1.1
prunus_persica	Prupe.4G028900_v2.0.a1
pyrus_communis	pycom05g30810 pycom05g30830
rosa_chinensis	RchiOBHm_Chr5g0004461
rosa_laevigata	RLG00000031230
rosa_multiflora	Rmu_sc0000433.1_g000002 Rmu_sc0002453.1_g000002
rosa_roxburghii	Rroxscaffold_1G00071060
rosa_rugosa	Rorug04G0411900
rosa_samantha	Rh5AG039500 Rh5BG038500 Rh5CG042600 Rh5DG038300
rosa_wichuraiana	Rw5G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1067
Acc36I	ACCTGC	1 cut(s)	281
AccI	GTMKAC	2 cut(s)	182, 786
AccII	CGCG	2 cut(s)	353, 1199
AciI	CCGC	3 cut(s)	689, 1155, 1197
AclWI	GGATC	1 cut(s)	972
AcsI	RAATTY	2 cut(s)	392, 873
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	5 cut(s)	365, 513, 572, 1166, 1327
AfiI	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	121, 929, 1399
AloI	GAACNNNNNNTCC	2 cut(s)	840, 872
AluBI	AGCT	7 cut(s)	172, 221, 326, 552, 866, 994, 1344
AluI	AGCT	7 cut(s)	172, 221, 326, 552, 866, 994, 1344
Alw21I	GWGCWC	2 cut(s)	773, 1188
Alw26I	GTCTC	2 cut(s)	323, 411
AlwI	GGATC	1 cut(s)	972
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	1350
ApaI	GGGCCC	1 cut(s)	1354
ApeKI	GCWGC	3 cut(s)	221, 1112, 1252
ApoI	RAATTY	2 cut(s)	392, 873
AseI	ATTAAT	1 cut(s)	755
Asp700I	GAANNNNTTC	1 cut(s)	1282
AspLEI	GCGC	3 cut(s)	523, 1099, 1201
AspS9I	GGNCC	3 cut(s)	980, 1350, 1351
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	980
AxyI	CCTNAGG	1 cut(s)	1101
BaeGI	GKGCMC	1 cut(s)	1354
BanII	GRGCYC	1 cut(s)	1354
Bbv12I	GWGCWC	2 cut(s)	773, 1188
BbvI	GCAGC	3 cut(s)	208, 1099, 1239
BccI	CCATC	4 cut(s)	50, 95, 991, 1309
BceAI	ACGGC	2 cut(s)	1125, 1196
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	323, 411
BfaI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1341
BfmI	CTRYAG	3 cut(s)	148, 553, 1253
BfoI	RGCGCY	1 cut(s)	1100
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	222, 1113, 1253
BlsI	GCNGC	3 cut(s)	223, 1114, 1254
BmcAI	AGTACT	1 cut(s)	1166
Bme18I	GGWCC	1 cut(s)	980
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	980, 1350, 1351
BmiI	GGNNCC	2 cut(s)	1351, 1352
BmsI	GCATC	2 cut(s)	384, 1238
Bsa29I	ATCGAT	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
Bse1I	ACTGG	4 cut(s)	234, 578, 627, 1248
Bse21I	CCTNAGG	1 cut(s)	1101
BseCI	ATCGAT	1 cut(s)	805
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	42, 744
BseLI	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
BseMII	CTCAG	6 cut(s)	105, 316, 336, 876, 1092, 1314
BseNI	ACTGG	4 cut(s)	234, 578, 627, 1248
BseSI	GKGCMC	1 cut(s)	1354
BseXI	GCAGC	3 cut(s)	208, 1099, 1239
BseYI	CCCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	931
Bsh1236I	CGCG	2 cut(s)	353, 1199
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	1352
BshVI	ATCGAT	1 cut(s)	805
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	773, 1188
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	4 cut(s)	135, 193, 695, 1009
BsmAI	GTCTC	2 cut(s)	323, 411
BsmI	GAATGC	1 cut(s)	1065
BsnI	GGCC	1 cut(s)	1352
BsoBI	CYCGRG	1 cut(s)	173
Bsp120I	GGGCCC	1 cut(s)	1350
Bsp1286I	GDGCHC	3 cut(s)	773, 1188, 1354
Bsp1407I	TGTACA	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	298, 504, 964
Bsp19I	CCATGG	1 cut(s)	734
Bsp68I	TCGCGA	1 cut(s)	353
BspACI	CCGC	3 cut(s)	689, 1155, 1197
BspANI	GGCC	1 cut(s)	1352
BspCNI	CTCAG	6 cut(s)	104, 315, 335, 875, 1093, 1313
BspDI	ATCGAT	1 cut(s)	805
BspFNI	CGCG	2 cut(s)	353, 1199
BspLI	GGNNCC	2 cut(s)	1351, 1352
BspMAI	CTGCAG	1 cut(s)	1257
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	972
BsrGI	TGTACA	1 cut(s)	363
BsrI	ACTGG	4 cut(s)	234, 578, 627, 1248
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	3 cut(s)	298, 504, 964
BssT1I	CCWWGG	1 cut(s)	734
Bst4CI	ACNGT	4 cut(s)	11, 511, 898, 1330
Bst6I	CTCTTC	1 cut(s)	1080
BstAUI	TGTACA	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	652, 722, 1188
BstDEI	CTNAG	7 cut(s)	91, 302, 322, 725, 862, 1101, 1300
BstDSI	CCRYGG	1 cut(s)	734
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	42, 744
BstFNI	CGCG	2 cut(s)	353, 1199
BstH2I	RGCGCY	1 cut(s)	1100
BstHHI	GCGC	3 cut(s)	523, 1099, 1201
BstKTI	GATC	3 cut(s)	301, 507, 967
BstMAI	GTCTC	2 cut(s)	323, 411
BstMBI	GATC	3 cut(s)	298, 504, 964
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	777, 1019, 1196
BstNSI	RCATGY	2 cut(s)	118, 724
BstPI	GGTNACC	1 cut(s)	334
BstSFI	CTRYAG	3 cut(s)	148, 553, 1253
BstSLI	GKGCMC	1 cut(s)	1354
BstUI	CGCG	2 cut(s)	353, 1199
BstV1I	GCAGC	3 cut(s)	208, 1099, 1239
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
Bsu15I	ATCGAT	1 cut(s)	805
Bsu36I	CCTNAGG	1 cut(s)	1101
BsuRI	GGCC	1 cut(s)	1352
BsuTUI	ATCGAT	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	734
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	42, 744
BtsIMutI	CAGTG	2 cut(s)	241, 507
BtuMI	TCGCGA	1 cut(s)	353
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	3 cut(s)	652, 722, 1188
CfoI	GCGC	3 cut(s)	523, 1099, 1201
Cfr13I	GGNCC	3 cut(s)	980, 1350, 1351
ClaI	ATCGAT	1 cut(s)	805
Csp6I	GTAC	5 cut(s)	364, 512, 571, 1165, 1326
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviQI	GTAC	5 cut(s)	364, 512, 571, 1165, 1326
DdeI	CTNAG	7 cut(s)	91, 302, 322, 725, 862, 1101, 1300
DpnI	GATC	3 cut(s)	300, 506, 966
DpnII	GATC	3 cut(s)	298, 504, 964
DraI	TTTAAA	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	1080
EarI	CTCTTC	1 cut(s)	1080
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	1354
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	1067
Eco81I	CCTNAGG	1 cut(s)	1101
Eco88I	CYCGRG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	334
EcoO109I	RGGNCCY	2 cut(s)	1350, 1351
EcoO65I	GGTNACC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	1354
ErhI	CCWWGG	1 cut(s)	734
FalI	AAGNNNNNCTT	2 cut(s)	909, 941
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	2 cut(s)	182, 786
Fnu4HI	GCNGC	3 cut(s)	222, 1113, 1253
FokI	GGATG	2 cut(s)	29, 751
FriOI	GRGCYC	1 cut(s)	1354
Fsp4HI	GCNGC	3 cut(s)	222, 1113, 1253
FspBI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1341
GlaI	GCGC	3 cut(s)	522, 1098, 1200
GluI	GCNGC	3 cut(s)	222, 1113, 1253
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	1 cut(s)	1100
HaeIII	GGCC	1 cut(s)	1352
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	3 cut(s)	523, 1099, 1201
Hin6I	GCGC	3 cut(s)	521, 1097, 1199
HinP1I	GCGC	3 cut(s)	521, 1097, 1199
HincII	GTYRAC	2 cut(s)	27, 636
HindII	GTYRAC	2 cut(s)	27, 636
HinfI	GANTC	5 cut(s)	204, 463, 584, 904, 922
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	5 cut(s)	27, 183, 571, 636, 787
Hpy188I	TCNGA	6 cut(s)	94, 305, 411, 439, 589, 969
Hpy188III	TCNNGA	4 cut(s)	296, 352, 901, 1380
Hpy8I	GTNNAC	5 cut(s)	27, 183, 571, 636, 787
HpyAV	CCTTC	5 cut(s)	72, 659, 800, 1272, 1364
HpyCH4III	ACNGT	4 cut(s)	11, 511, 898, 1330
HpyCH4V	TGCA	7 cut(s)	20, 375, 480, 720, 912, 1229, 1255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	777, 1019, 1196
HpyF3I	CTNAG	7 cut(s)	91, 302, 322, 725, 862, 1101, 1300
HspAI	GCGC	3 cut(s)	521, 1097, 1199
Ksp22I	TGATCA	1 cut(s)	504
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	298, 504, 964
LmnI	GCTCC	1 cut(s)	1183
Lsp1109I	GCAGC	3 cut(s)	208, 1099, 1239
LweI	GCATC	2 cut(s)	384, 1238
MaeI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1341
MaeIII	GTNAC	7 cut(s)	334, 450, 614, 679, 1105, 1213, 1367
MalI	GATC	3 cut(s)	300, 506, 966
MboI	GATC	3 cut(s)	298, 504, 964
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	3 cut(s)	773, 1188, 1354
MluCI	AATT	4 cut(s)	105, 392, 756, 873
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	958
MroXI	GAANNNNTTC	1 cut(s)	1282
MseI	TTAA	5 cut(s)	26, 755, 941, 1322, 1411
MslI	CAYNNNNRTG	1 cut(s)	1313
MspI	CCGG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	1065
MvnI	CGCG	2 cut(s)	353, 1199
MwoI	GCNNNNNNNGC	3 cut(s)	777, 1019, 1196
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	3 cut(s)	298, 504, 964
NlaIV	GGNNCC	2 cut(s)	1351, 1352
NmuCI	GTSAC	4 cut(s)	334, 614, 1213, 1367
NruI	TCGCGA	1 cut(s)	353
NspI	RCATGY	2 cut(s)	118, 724
PaeI	GCATGC	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	2 cut(s)	651, 802
PctI	GAATGC	1 cut(s)	1065
PdmI	GAANNNNTTC	1 cut(s)	1282
PfeI	GAWTC	4 cut(s)	204, 584, 904, 922
PkrI	GCNGC	3 cut(s)	223, 1114, 1254
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
PscI	ACATGT	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	1067
PspEI	GGTNACC	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	1351, 1352
PspOMI	GGGCCC	1 cut(s)	1350
PspPI	GGNCC	3 cut(s)	980, 1350, 1351
PspXI	VCTCGAGB	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	1257
PsuI	RGATCY	1 cut(s)	964
RruI	TCGCGA	1 cut(s)	353
RsaI	GTAC	5 cut(s)	365, 513, 572, 1166, 1327
RsaNI	GTAC	5 cut(s)	364, 512, 571, 1165, 1326
RseI	CAYNNNNRTG	1 cut(s)	1313
SaqAI	TTAA	5 cut(s)	26, 755, 941, 1322, 1411
SatI	GCNGC	3 cut(s)	222, 1113, 1253
Sau3AI	GATC	3 cut(s)	298, 504, 964
Sau96I	GGNCC	3 cut(s)	980, 1350, 1351
ScaI	AGTACT	1 cut(s)	1166
SchI	GAGTC	1 cut(s)	472
SduI	GDGCHC	3 cut(s)	773, 1188, 1354
SfaNI	GCATC	2 cut(s)	384, 1238
SfcI	CTRYAG	3 cut(s)	148, 553, 1253
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	980
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	1313
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	4 cut(s)	105, 392, 756, 873
SsiI	CCGC	3 cut(s)	689, 1155, 1197
SspMI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1341
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	4 cut(s)	11, 511, 898, 1330
TaqI	TCGA	2 cut(s)	174, 805
TaqII	GACCGA	1 cut(s)	337
TasI	AATT	4 cut(s)	105, 392, 756, 873
TatI	WGTACW	5 cut(s)	363, 511, 570, 1164, 1325
TfiI	GAWTC	4 cut(s)	204, 584, 904, 922
Tru1I	TTAA	5 cut(s)	26, 755, 941, 1322, 1411
Tru9I	TTAA	5 cut(s)	26, 755, 941, 1322, 1411
TscAI	CASTG	2 cut(s)	241, 514
TseFI	GTSAC	4 cut(s)	334, 614, 1213, 1367
TseI	GCWGC	3 cut(s)	221, 1112, 1252
Tsp45I	GTSAC	4 cut(s)	334, 614, 1213, 1367
TspRI	CASTG	2 cut(s)	241, 514
VpaK11BI	GGWCC	1 cut(s)	980
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	2 cut(s)	392, 873
XceI	RCATGY	2 cut(s)	118, 724
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	2 cut(s)	182, 786
XmnI	GAANNNNTTC	1 cut(s)	1282
XspI	CTAG	7 cut(s)	284, 315, 455, 467, 782, 995, 1341
ZrmI	AGTACT	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.