Rw5G003770

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0009375
Physical Location & Seq
Forward (+)
3788477 .. 3790212
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G003770.1

Sequence Viewer

Length: 1284 bp
ATGAAGAACCATAAGGTTGCATTGTTAACTGTATCCCTTTCCATCCTCATCAATTTCAGTCCTTCTCAAGCAAAACAAACTCAACCCATCTCAGATGTCCTTAGAATTGACAACATTCTCAACAACACGTATGAATGGTTGAGCCTCTATAGAAAACCCCATGAAACCCAGCTCGAGTTGTCTACCCCACTTGTGGTGGCAGGAGTCTTGTGCTTCATAGCTGCCTCTATATCCAGTGCTGGTGGGATTGGTGGTGGTGGGTTGTTCATACCAATACTGACCCTAGTGGCAGGTCTTGACCTCAGAATAGCCTCTGGTCTCTCAGCTTTCATGGTCACCGGAGGCTCTGTCGCGAATGTCATGTACAACTTGTGCATCAAAGGTAGCACCAAATTTGGTGGCAAGTCTCTGATTGACTATGACATAGCACTTCTATCAGAGCCATGTATGTTACTAGGAGTAAGTCTAGGAGTGATTTGCAACCTTGTATTCCCAGAGTGGCTGATCACTATACTCTTTGCGCTTTTCCTTGCTTGGACTACCTCAATGAGCTGTAGAAATGGGCTGGTGTATTGGAAAATAGAGTCAGAAGTGATGAAGATGAGGAATGGTTGTGAGAGACTGGAAAATGGGTTGACGAAAAACGGGGCAGGCGACGAAACAGAAGGGAACAGAGGGGTTACAGAATCGCTTTTAGGAGTAAGAACAGAAGAAAACTGCATACTAAGATTTCCATGGATGAAAATGGGGGTATTAATTCTGGTCTGGTGCTCTTTCTGCCTAGTCTACCTTCTTCGTGGAAATCGATATGGACAGGGCATTATACCAATAGAGCCTTGTGGAGTGGGATATTGGGTTCTCTCATCTTCCCAAATTCCTCTTGCCATAGTTTATACAGCCTGGATTCTATGCAGAAAAGAGAATCTTCAACATCATACTTTAAACACCCAAAAGGATATGGAGGAGCCGAACAAAGTTGGACCATCAAACAAGCTGGTTTTCCCACTAATGGCACTATTAGCAGGGATTTTAGGGGGTGTCTTTGGGATTGGAGGTGGAATGCTGATAAGCCCTCTTCTTCTTCAGGTTGGGATAGCACCTGAGGTAACGGCTGCGACTTTGCTGCAGAGAGCAATCAAAGTTTATGGAAGGGCTTCTCTCATTGTATTCTCAGTTAGCATAGTGATGGCTTTGAGTACAGTTTTGATGACTAGCTTTGGGGCCCTTCATGTATGGAGTGACTATAAATCTGGAAGATACATGGGCTTCAAACTACCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

427

Amino Acids

46.41

Weight (kDa)

8.65

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 55 - 180 2.4e-11 Sulfite exporter TauE/SafE
TauE PF01925 294 - 407 9.1e-07 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
AccI GTMKAC 2 cut(s) 182, 786
AccII CGCG 1 cut(s) 353
AcsI RAATTY 2 cut(s) 392, 873
AcuI CTGAAG 1 cut(s) 1067
AfaI GTAC 2 cut(s) 365, 1198
AfiI CCNNNNNNNGG 2 cut(s) 193, 1009
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 929, 1270
AjnI CCWGG 1 cut(s) 899
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
AluBI AGCT 6 cut(s) 172, 221, 326, 552, 994, 1215
AluI AGCT 6 cut(s) 172, 221, 326, 552, 994, 1215
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 3 cut(s) 323, 411, 613
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 1221
ApaI GGGCCC 1 cut(s) 1225
ApeKI GCWGC 3 cut(s) 221, 1112, 1123
ApoI RAATTY 2 cut(s) 392, 873
AseI ATTAAT 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 1153
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 3 cut(s) 980, 1221, 1222
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 1101
BaeGI GKGCMC 1 cut(s) 1225
BanII GRGCYC 1 cut(s) 1225
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 3 cut(s) 208, 1099, 1110
BccI CCATC 4 cut(s) 50, 95, 991, 1180
BceAI ACGGC 1 cut(s) 1125
BcgI CGANNNNNNTGC 2 cut(s) 1105, 1139
BciT130I CCWGG 1 cut(s) 901
BciVI GTATCC 1 cut(s) 43
BclI TGATCA 1 cut(s) 504
BcoDI GTCTC 3 cut(s) 323, 411, 613
BfaI CTAG 5 cut(s) 284, 455, 467, 782, 1212
BfmI CTRYAG 3 cut(s) 148, 553, 1124
BfuAI ACCTGC 1 cut(s) 281
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 3 cut(s) 222, 1113, 1124
BlsI GCNGC 3 cut(s) 223, 1114, 1125
Bme1390I CCNGG 1 cut(s) 901
Bme18I GGWCC 1 cut(s) 980
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 980, 1221, 1222
BmiI GGNNCC 3 cut(s) 966, 1222, 1223
BmrFI CCNGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 734
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 1009
Bse1I ACTGG 2 cut(s) 234, 627
Bse21I CCTNAGG 1 cut(s) 1101
BseBI CCWGG 1 cut(s) 901
BseCI ATCGAT 1 cut(s) 805
BseDI CCNNGG 1 cut(s) 734
BseGI GGATG 2 cut(s) 42, 744
BseLI CCNNNNNNNGG 2 cut(s) 193, 1009
BseMII CTCAG 5 cut(s) 105, 316, 336, 1092, 1185
BseNI ACTGG 2 cut(s) 234, 627
BseRI GAGGAG 1 cut(s) 977
BseSI GKGCMC 1 cut(s) 1225
BseXI GCAGC 3 cut(s) 208, 1099, 1110
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 1 cut(s) 1223
BshVI ATCGAT 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 773
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 193, 1009
BsmAI GTCTC 3 cut(s) 323, 411, 613
BsmI GAATGC 1 cut(s) 1065
BsnI GGCC 1 cut(s) 1223
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 1221
Bsp1286I GDGCHC 2 cut(s) 773, 1225
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 734
Bsp68I TCGCGA 1 cut(s) 353
BspANI GGCC 1 cut(s) 1223
BspCNI CTCAG 5 cut(s) 104, 315, 335, 1093, 1184
BspDI ATCGAT 1 cut(s) 805
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 3 cut(s) 966, 1222, 1223
BspMAI CTGCAG 1 cut(s) 1128
BspMI ACCTGC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 2 cut(s) 234, 627
BssECI CCNNGG 1 cut(s) 734
BssMI GATC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 2 cut(s) 31, 1201
Bst6I CTCTTC 1 cut(s) 1080
BstAUI TGTACA 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 7 cut(s) 91, 101, 302, 322, 725, 1101, 1171
BstDSI CCRYGG 1 cut(s) 734
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 2 cut(s) 42, 744
BstFNI CGCG 1 cut(s) 353
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 3 cut(s) 323, 411, 613
BstMBI GATC 1 cut(s) 504
BstMWI GCNNNNNNNGC 2 cut(s) 777, 1019
BstNI CCWGG 1 cut(s) 901
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 899
BstSFI CTRYAG 3 cut(s) 148, 553, 1124
BstSLI GKGCMC 1 cut(s) 1225
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 208, 1099, 1110
Bsu15I ATCGAT 1 cut(s) 805
Bsu36I CCTNAGG 1 cut(s) 1101
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 1223
BsuTUI ATCGAT 1 cut(s) 805
BtgI CCRYGG 1 cut(s) 734
BtsCI GGATG 2 cut(s) 42, 744
BtsIMutI CAGTG 1 cut(s) 241
BtuMI TCGCGA 1 cut(s) 353
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 652
CfoI GCGC 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 980, 1221, 1222
ClaI ATCGAT 1 cut(s) 805
Csp6I GTAC 2 cut(s) 364, 1197
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 8 cut(s) 161, 331, 361, 444, 735, 1229, 1261, 1278
CviQI GTAC 2 cut(s) 364, 1197
DdeI CTNAG 7 cut(s) 91, 101, 302, 322, 725, 1101, 1171
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
DraI TTTAAA 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 1080
EarI CTCTTC 1 cut(s) 1080
Eco130I CCWWGG 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 1225
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 980
Eco57I CTGAAG 1 cut(s) 1067
Eco81I CCTNAGG 1 cut(s) 1101
Eco88I CYCGRG 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 1221, 1222
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 899
EcoT14I CCWWGG 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 1225
ErhI CCWWGG 1 cut(s) 734
FaeI CATG 8 cut(s) 164, 334, 364, 447, 738, 1232, 1264, 1281
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FatI CATG 8 cut(s) 160, 330, 360, 443, 734, 1228, 1260, 1277
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 2 cut(s) 182, 786
Fnu4HI GCNGC 3 cut(s) 222, 1113, 1124
FokI GGATG 2 cut(s) 29, 751
FriOI GRGCYC 1 cut(s) 1225
Fsp4HI GCNGC 3 cut(s) 222, 1113, 1124
FspBI CTAG 5 cut(s) 284, 455, 467, 782, 1212
GlaI GCGC 1 cut(s) 522
GluI GCNGC 3 cut(s) 222, 1113, 1124
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 1223
HapII CCGG 1 cut(s) 339
HhaI GCGC 1 cut(s) 523
Hin1II CATG 8 cut(s) 164, 334, 364, 447, 738, 1232, 1264, 1281
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HincII GTYRAC 2 cut(s) 27, 636
HindII GTYRAC 2 cut(s) 27, 636
HinfI GANTC 5 cut(s) 204, 584, 686, 904, 922
HpaI GTTAAC 1 cut(s) 27
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 4 cut(s) 27, 183, 636, 787
Hpy188I TCNGA 5 cut(s) 94, 305, 411, 439, 589
Hpy188III TCNNGA 3 cut(s) 296, 352, 1251
Hpy8I GTNNAC 4 cut(s) 27, 183, 636, 787
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 5 cut(s) 72, 659, 800, 1143, 1235
HpyCH4III ACNGT 2 cut(s) 31, 1201
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 6 cut(s) 20, 375, 480, 720, 912, 1126
HpyF10VI GCNNNNNNNGC 2 cut(s) 777, 1019
HpyF3I CTNAG 7 cut(s) 91, 101, 302, 322, 725, 1101, 1171
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 8 cut(s) 164, 334, 364, 447, 738, 1232, 1264, 1281
HspAI GCGC 1 cut(s) 521
Ksp22I TGATCA 1 cut(s) 504
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 964
Lsp1109I GCAGC 3 cut(s) 208, 1099, 1110
LweI GCATC 1 cut(s) 384
MaeI CTAG 5 cut(s) 284, 455, 467, 782, 1212
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 5 cut(s) 334, 450, 679, 1105, 1238
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 773, 1225
MluCI AATT 5 cut(s) 52, 105, 392, 756, 873
MlyI GAGTC 2 cut(s) 213, 593
MmeI TCCRAC 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 1153
MseI TTAA 4 cut(s) 26, 755, 941, 1282
MslI CAYNNNNRTG 1 cut(s) 1184
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 901
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 901
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 777, 1019
NcoI CCATGG 1 cut(s) 734
NdeII GATC 1 cut(s) 504
NlaIII CATG 8 cut(s) 164, 334, 364, 447, 738, 1232, 1264, 1281
NlaIV GGNNCC 3 cut(s) 966, 1222, 1223
NmuCI GTSAC 2 cut(s) 334, 1238
NruI TCGCGA 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 2 cut(s) 651, 802
PctI GAATGC 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 1153
PfeI GAWTC 3 cut(s) 686, 904, 922
PkrI GCNGC 3 cut(s) 223, 1114, 1125
PleI GAGTC 2 cut(s) 212, 592
PpsI GAGTC 2 cut(s) 212, 592
Ppu21I YACGTR 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 899
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 3 cut(s) 966, 1222, 1223
PspOMI GGGCCC 1 cut(s) 1221
PspPI GGNCC 3 cut(s) 980, 1221, 1222
PspXI VCTCGAGB 1 cut(s) 173
PstI CTGCAG 1 cut(s) 1128
RruI TCGCGA 1 cut(s) 353
RsaI GTAC 2 cut(s) 365, 1198
RsaNI GTAC 2 cut(s) 364, 1197
RseI CAYNNNNRTG 1 cut(s) 1184
SaqAI TTAA 4 cut(s) 26, 755, 941, 1282
SatI GCNGC 3 cut(s) 222, 1113, 1124
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 3 cut(s) 980, 1221, 1222
SchI GAGTC 2 cut(s) 213, 593
ScrFI CCNGG 1 cut(s) 901
SduI GDGCHC 2 cut(s) 773, 1225
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 3 cut(s) 148, 553, 1124
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 980
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 1184
SmlI CTYRAG 2 cut(s) 66, 173
SmoI CTYRAG 2 cut(s) 66, 173
Sse9I AATT 5 cut(s) 52, 105, 392, 756, 873
SspMI CTAG 5 cut(s) 284, 455, 467, 782, 1212
StyD4I CCNGG 1 cut(s) 899
StyI CCWWGG 1 cut(s) 734
TaaI ACNGT 2 cut(s) 31, 1201
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 174, 805
TasI AATT 5 cut(s) 52, 105, 392, 756, 873
TatI WGTACW 2 cut(s) 363, 1196
TfiI GAWTC 3 cut(s) 686, 904, 922
Tru1I TTAA 4 cut(s) 26, 755, 941, 1282
Tru9I TTAA 4 cut(s) 26, 755, 941, 1282
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 334, 1238
TseI GCWGC 3 cut(s) 221, 1112, 1123
Tsp45I GTSAC 2 cut(s) 334, 1238
TspDTI ATGAA 9 cut(s) 17, 147, 177, 205, 256, 319, 611, 755, 1217
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 980
VspI ATTAAT 1 cut(s) 755
XapI RAATTY 2 cut(s) 392, 873
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 182, 786
XmnI GAANNNNTTC 1 cut(s) 1153
XspI CTAG 5 cut(s) 284, 455, 467, 782, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.