AT1G61795

P21-Rho-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010970
Physical Location & Seq
Forward (+)
22819601 .. 22821053
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61795.1

Sequence Viewer

Length: 387 bp
ATGGCTACAAGATTCAAGGGGCTTTATAACAAGAGCTTCAAATGTTTCTCCGACATTTTTGATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGACACGTGTCACATATCGGTTGGGATAGTTCATCAAGTAGTGCACCTAGTTGGCTACATGAATTCAAGACGAGCAACAATGTTTTAGAGCCAAACTCATCGTGGCCATTTCAAGATTTGAAGTCAGCGATGGAGGCATTTGGAGAAGTTGAAAGCAGCAAAGAAATGGAAAGAGAATCAACTAAACAAAATCTGAAGAAGAAACTCTCTTCAAAAGCTTCTCTATTGTGTAATTCATGGTCACCAAGATTCTCAAGATCAAGCAAGGTCCTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

128

Amino Acids

14.64

Weight (kDa)

5.94

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61795 AT4G04900 AT4G04900 AT4G21745
fragaria_vesca FvH4_3g02570 FvH4_3g02570
malus_domestica MD05G1341900.v1.1
prunus_persica Prupe.4G025100_v2.0.a1 Prupe.4G025100_v2.0.a1
pyrus_communis pycom05g31130
rosa_chinensis RchiOBHm_Chr5g0003861
rosa_laevigata RLG00000031184
rosa_multiflora Rmu_co8278535.1_g000001
rosa_roxburghii Rroxscaffold_1G00072110
rosa_rugosa Rorug04G0407500
rosa_samantha Rh5AG035000 Rh5BG033500 Rh5CG037400 Rh5DG033700
rosa_wichuraiana Rw5G003200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 323
AcvI CACGTG 1 cut(s) 115
AflIII ACRYGT 2 cut(s) 112, 114
AgsI TTSAA 7 cut(s) 16, 40, 175, 221, 229, 260, 321
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 2 cut(s) 36, 326
AluI AGCT 2 cut(s) 36, 326
Alw21I GWGCWC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 150
AoxI GGCC 1 cut(s) 212
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 342
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 214
BbrPI CACGTG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 276
BccI CCATC 2 cut(s) 76, 232
BciT130I CCWGG 1 cut(s) 380
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 380
BoxI GACNNNNGTC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpuEI CTTGAG 1 cut(s) 346
BsaAI YACGTR 1 cut(s) 115
BseBI CCWGG 1 cut(s) 380
BseRI GAGGAG 4 cut(s) 83, 86, 89, 92
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 154
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 365
BspANI GGCC 1 cut(s) 214
BssMI GATC 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 348
BstKTI GATC 1 cut(s) 368
BstMBI GATC 1 cut(s) 365
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 276
BsuRI GGCC 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 376
CviAII CATG 2 cut(s) 167, 345
CviJI RGCY 8 cut(s) 5, 22, 36, 163, 199, 214, 326, 383
CviKI_1 RGCY 8 cut(s) 5, 22, 36, 163, 199, 214, 326, 383
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 323
Eco72I CACGTG 1 cut(s) 115
Eco91I GGTNACC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 170, 348
FaiI YATR 4 cut(s) 27, 123, 168, 346
FatI CATG 2 cut(s) 166, 344
Fnu4HI GCNGC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 2 cut(s) 170, 348
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 3 cut(s) 12, 284, 357
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 3 cut(s) 52, 99, 303
Hpy188III TCNNGA 3 cut(s) 175, 221, 363
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 2 cut(s) 170, 348
Kzo9I GATC 1 cut(s) 365
LpnPI CCDG 1 cut(s) 365
Lsp1109I GCAGC 1 cut(s) 276
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 117, 348
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 3 cut(s) 309, 316, 319
MhlI GDGCHC 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 3 cut(s) 87, 170, 340
MluNI TGGCCA 1 cut(s) 214
MmeI TCCRAC 2 cut(s) 75, 122
MnlI CCTC 5 cut(s) 61, 64, 67, 70, 235
Mox20I TGGCCA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 214
MseI TTAA 1 cut(s) 385
Msp20I TGGCCA 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 365
NlaIII CATG 2 cut(s) 170, 348
NmuCI GTSAC 2 cut(s) 117, 348
PfeI GAWTC 3 cut(s) 12, 284, 357
PkrI GCNGC 1 cut(s) 266
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 378
PspCI CACGTG 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 378
PspPI GGNCC 1 cut(s) 376
PspPPI RGGWCCY 1 cut(s) 376
SaqAI TTAA 1 cut(s) 385
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 38, 117, 157, 328, 378
SinI GGWCC 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 3 cut(s) 87, 170, 340
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 378
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 109
TaqII GACCGA 1 cut(s) 116
TasI AATT 3 cut(s) 87, 170, 340
TfiI GAWTC 3 cut(s) 12, 284, 357
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TseFI GTSAC 2 cut(s) 117, 348
TseI GCWGC 1 cut(s) 264
Tsp45I GTSAC 2 cut(s) 117, 348
TspDTI ATGAA 3 cut(s) 129, 183, 333
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.