Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010970

Physical Location & Seq

Genomic Coordinates Forward (+)

11548606 .. 11550622

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21745.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCAATGAAGATGAAGGGAATATACAAAAGCTTCAAATCCATAATGTTTGTTGGGAAAGAAAGAGATTTGGAAATTGGGCACCCAACAGAAGTAAAACATGTGGCCCATATTGGTTGGGGCTCCTCTGGCAGTGATCCTGGTTGGATGAGTGACTTTAAGGCAGGAGCAGAGTTTTTATCTCCAAGAACATCATCTTTCAGTCATACAAGACATTCAGATTCTTTCTTCACCACTTCTGATTCCACTGAATTCGATCAGGACCAACTGAATATATCAGATAGGATAAGAGATGTGCCTCCTATACCAGTAGGTCTATCCAAGATTCATACTAAGAGCAAGAATAGGAGAAAGAAACCATCTTCGACGTCATCACCAAGATCCAGACCATCTCCAAAATCTTCGAGATCAATGGGTTTATCGAAGTCATCACATAAATCAATGGTGTCTCGGTTAAACTCTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

156

Amino Acids

17.32

Weight (kDa)

10.31

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61795 AT4G04900 AT4G04900 AT4G21745
fragaria_vesca	FvH4_3g02570 FvH4_3g02570
malus_domestica	MD05G1341900.v1.1
prunus_persica	Prupe.4G025100_v2.0.a1 Prupe.4G025100_v2.0.a1
pyrus_communis	pycom05g31130
rosa_chinensis	RchiOBHm_Chr5g0003861
rosa_laevigata	RLG00000031184
rosa_multiflora	Rmu_co8278535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072110
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG035000 Rh5BG033500 Rh5CG037400 Rh5DG033700
rosa_wichuraiana	Rw5G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	81
AclWI	GGATC	2 cut(s)	131, 375
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	131, 375
AoxI	GGCC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	106, 262
AsuHPI	GGTGA	2 cut(s)	223, 366
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BccI	CCATC	2 cut(s)	367, 397
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	106, 262
BmiI	GGNNCC	2 cut(s)	83, 124
BmrFI	CCNGG	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	84, 125
Bsp143I	GATC	4 cut(s)	136, 256, 380, 407
BspANI	GGCC	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	83, 124
BspPI	GGATC	2 cut(s)	131, 375
BspT107I	GGYRCC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	4 cut(s)	136, 256, 380, 407
BssNI	GRCGYC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	139, 259, 383, 410
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	4 cut(s)	136, 256, 380, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 246
Cfr13I	GGNCC	2 cut(s)	106, 262
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	3 cut(s)	33, 107, 123
CviKI_1	RGCY	3 cut(s)	33, 107, 123
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	4 cut(s)	138, 258, 382, 409
DpnII	GATC	4 cut(s)	136, 256, 380, 407
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	1 cut(s)	104
FatI	CATG	1 cut(s)	100
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	3 cut(s)	221, 242, 325
HphI	GGTGA	2 cut(s)	223, 366
Hpy188I	TCNGA	3 cut(s)	220, 241, 280
Hpy188III	TCNNGA	3 cut(s)	260, 384, 405
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	136, 256, 380, 407
LmnI	GCTCC	2 cut(s)	128, 167
LpnPI	CCDG	7 cut(s)	114, 126, 150, 153, 245, 321, 397
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	4 cut(s)	138, 258, 382, 409
MboI	GATC	4 cut(s)	136, 256, 380, 407
MboII	GAAGA	4 cut(s)	22, 220, 354, 393
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	84, 125
MluCI	AATT	2 cut(s)	75, 251
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	136, 309
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	2 cut(s)	159, 455
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	4 cut(s)	136, 256, 380, 407
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	83, 124
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	1 cut(s)	104
PciI	ACATGT	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	221, 242, 325
PscI	ACATGT	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	83, 124
PspPI	GGNCC	2 cut(s)	106, 262
PsuI	RGATCY	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	159, 455
Sau3AI	GATC	4 cut(s)	136, 256, 380, 407
Sau96I	GGNCC	2 cut(s)	106, 262
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	84, 125
SetI	ASST	3 cut(s)	35, 316, 371
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	2 cut(s)	75, 251
StyD4I	CCNGG	1 cut(s)	139
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	4 cut(s)	255, 365, 404, 422
TasI	AATT	2 cut(s)	75, 251
TfiI	GAWTC	3 cut(s)	221, 242, 325
Tru1I	TTAA	2 cut(s)	159, 455
Tru9I	TTAA	2 cut(s)	159, 455
TscAI	CASTG	2 cut(s)	139, 253
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	23, 29, 317
TspRI	CASTG	2 cut(s)	139, 253
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.