Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010970

Physical Location & Seq

Genomic Coordinates Reverse (-)

2774840 .. 2778854

Gene Structure 4015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGAAAAAGGCAAAAGGTACATCATCATCATCATCTCTTCCCCAATCTTTATTTCTGGTGTTTGCTTCCCTCATTCTTCAAGGAGCTGCTGCATTTGGGCAATTTGGGCTTCTAGTTTCCACCATGGCCAAGATTTTCAAATACATCTCTCAAATATTTGTTGTGAAGGAGCGTGAAATGGAAATTGGGTTCCCGACAGATGTGAAACATGTAGCTCACATTGGGTGGGACGGTCCGTCTGATAGTGCACCCAGTTGGATGAATGAGTTCAAAAATGGACCCGATTTCTCAACACTGGGTCGCAATAACACCAGTGATCGAAGGGACTCCTCCAGCAGCACGGCTCCTTCTCCTTGGGCCTCTCACGATTTTGAGCAATCCATGGGACGCCAGCCATCAACCAACTTGATAGACCTTCCTCCTAATGACCTTGCAAATGTTCCCAAGAAGCCAAAGCGGAAAAAGGTCAAATCTTCGTCTTCCTCTTCCTCATCATCGAGATCGTCACGACCAGTGAAGGCGTCAAAGGCTACATATACGCAAATGGAGCCGACACCAAACCTGCTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

192

Amino Acids

20.76

Weight (kDa)

9.9

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61795 AT4G04900 AT4G04900 AT4G21745
fragaria_vesca	FvH4_3g02570 FvH4_3g02570
malus_domestica	MD05G1341900.v1.1
prunus_persica	Prupe.4G025100_v2.0.a1 Prupe.4G025100_v2.0.a1
pyrus_communis	pycom05g31130
rosa_chinensis	RchiOBHm_Chr5g0003861
rosa_laevigata	RLG00000031184
rosa_multiflora	Rmu_co8278535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072110
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG035000 Rh5BG033500 Rh5CG037400 Rh5DG033700
rosa_wichuraiana	Rw5G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	129
AcyI	GRCGYC	2 cut(s)	391, 524
AfaI	GTAC	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	83, 142, 274
AhdI	GACNNNNNGTC	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	4 cut(s)	39, 71, 171, 203
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	2 cut(s)	89, 218
AluI	AGCT	2 cut(s)	89, 218
Alw21I	GWGCWC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	129, 360
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	89, 92, 339
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	236, 281, 360
AvaII	GGWCC	2 cut(s)	236, 281
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	76, 79, 351
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	90, 93, 340
BlsI	GCNGC	3 cut(s)	91, 94, 341
Bme18I	GGWCC	2 cut(s)	236, 281
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	236, 281, 360
BmiI	GGNNCC	4 cut(s)	194, 283, 348, 552
BmrI	ACTGGG	2 cut(s)	249, 308
BmuI	ACTGGG	2 cut(s)	249, 308
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	391, 524
BsaJI	CCNNGG	3 cut(s)	126, 356, 384
Bse1I	ACTGG	4 cut(s)	255, 303, 315, 515
BseDI	CCNNGG	3 cut(s)	126, 356, 384
BseGI	GGATG	1 cut(s)	267
BseNI	ACTGG	4 cut(s)	255, 303, 315, 515
BseRI	GAGGAG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	76, 79, 351
BshFI	GGCC	2 cut(s)	131, 362
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	3 cut(s)	245, 341, 402
BsmFI	GGGAC	3 cut(s)	245, 341, 402
BsnI	GGCC	2 cut(s)	131, 362
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	319, 503
Bsp19I	CCATGG	2 cut(s)	126, 384
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	131, 362
BspLI	GGNNCC	4 cut(s)	194, 283, 348, 552
BsrI	ACTGG	4 cut(s)	255, 303, 315, 515
BssECI	CCNNGG	3 cut(s)	126, 356, 384
BssMI	GATC	2 cut(s)	319, 503
BssNI	GRCGYC	2 cut(s)	391, 524
BssT1I	CCWWGG	3 cut(s)	126, 356, 384
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	45, 493
BstACI	GRCGYC	2 cut(s)	391, 524
BstC8I	GCNNGC	1 cut(s)	395
BstDSI	CCRYGG	2 cut(s)	126, 384
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	322, 506
BstMBI	GATC	2 cut(s)	319, 503
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 109, 530, 550
BstNSI	RCATGY	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	76, 79, 351
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	131, 362
BtgI	CCRYGG	2 cut(s)	126, 384
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	296, 322, 522
Cac8I	GCNNGC	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	236, 281, 360
CpoI	CGGWCCG	1 cut(s)	236
CseI	GACGC	2 cut(s)	399, 513
Csp6I	GTAC	1 cut(s)	21
CspI	CGGWCCG	1 cut(s)	236
CviAII	CATG	3 cut(s)	127, 212, 385
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	2 cut(s)	321, 505
DpnII	GATC	2 cut(s)	319, 503
DriI	GACNNNNNGTC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	45, 493
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	2 cut(s)	45, 493
Eco130I	CCWWGG	3 cut(s)	126, 356, 384
Eco47I	GGWCC	2 cut(s)	236, 281
EcoT14I	CCWWGG	3 cut(s)	126, 356, 384
ErhI	CCWWGG	3 cut(s)	126, 356, 384
FaeI	CATG	3 cut(s)	130, 215, 388
FaiI	YATR	6 cut(s)	128, 213, 386, 538, 540, 574
FaqI	GGGAC	3 cut(s)	245, 341, 402
FatI	CATG	3 cut(s)	126, 211, 384
Fnu4HI	GCNGC	3 cut(s)	90, 93, 340
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	90, 93, 340
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	90, 93, 340
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	131, 362
HgaI	GACGC	2 cut(s)	399, 513
Hin1I	GRCGYC	2 cut(s)	391, 524
Hin1II	CATG	3 cut(s)	130, 215, 388
HinfI	GANTC	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	4 cut(s)	196, 368, 501, 510
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	5 cut(s)	163, 318, 360, 428, 514
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	3 cut(s)	95, 251, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 109, 530, 550
Hsp92I	GRCGYC	2 cut(s)	391, 524
Hsp92II	CATG	3 cut(s)	130, 215, 388
Kzo9I	GATC	2 cut(s)	319, 503
LmnI	GCTCC	4 cut(s)	86, 172, 352, 550
LpnPI	CCDG	7 cut(s)	44, 268, 284, 328, 349, 407, 528
Lsp1109I	GCAGC	3 cut(s)	76, 79, 351
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	2 cut(s)	321, 505
MboI	GATC	2 cut(s)	319, 503
MboII	GAAGA	5 cut(s)	32, 71, 468, 474, 480
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	104, 186
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	83, 343, 373, 432, 496, 502
Mox20I	TGGCCA	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	11, 109, 530, 550
NcoI	CCATGG	2 cut(s)	126, 384
NdeII	GATC	2 cut(s)	319, 503
NlaIII	CATG	3 cut(s)	130, 215, 388
NlaIV	GGNNCC	4 cut(s)	194, 283, 348, 552
NmuCI	GTSAC	1 cut(s)	507
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	91, 94, 341
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PscI	ACATGT	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	194, 283, 348, 552
PspPI	GGNCC	3 cut(s)	236, 281, 360
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
Rsr2I	CGGWCCG	1 cut(s)	236
RsrII	CGGWCCG	1 cut(s)	236
SatI	GCNGC	3 cut(s)	90, 93, 340
Sau3AI	GATC	2 cut(s)	319, 503
Sau96I	GGNCC	3 cut(s)	236, 281, 360
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	7 cut(s)	22, 91, 220, 420, 435, 471, 567
SinI	GGWCC	2 cut(s)	236, 281
Sse9I	AATT	2 cut(s)	104, 186
SsiI	CCGC	1 cut(s)	460
SspI	AATATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	116
StyI	CCWWGG	3 cut(s)	126, 356, 384
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	322, 500
TasI	AATT	2 cut(s)	104, 186
TscAI	CASTG	3 cut(s)	303, 322, 522
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	3 cut(s)	89, 92, 339
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	303, 322, 522
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	236, 281
XceI	RCATGY	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.