Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010970

Physical Location & Seq

Genomic Coordinates Forward (+)

1289201 .. 1292633

Gene Structure 3433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAATGAGTTCAAAAATCCACCCGATTTCTCAACACTGGGTCGCAATAACACCGGTGATCGAAGGGACTCCTCCAGCAGCATGGCTGCTTCCCCTTGGGCCTCTCAAGATTTTGAGCATTCCATGCGCCAGCCATCAACCAATTTGATAGACCTTCCTCCTAATGACCTTGCAAATGTTCCCAAGAAACCAAAGAGGAAAAAGGTCAAATCTTCGTCTTCCTCCTCCTCATCGTCGAGATCGTCGCGACCAATGAAGACGCCAAAGGCTACATATACGCAAATGGAGCCAACACCAAACCTGCTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

10.16

Isoelectric Point (pI)

63.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61795 AT4G04900 AT4G04900 AT4G21745
fragaria_vesca	FvH4_3g02570 FvH4_3g02570
malus_domestica	MD05G1341900.v1.1
prunus_persica	Prupe.4G025100_v2.0.a1 Prupe.4G025100_v2.0.a1
pyrus_communis	pycom05g31130
rosa_chinensis	RchiOBHm_Chr5g0003861
rosa_laevigata	RLG00000031184
rosa_multiflora	Rmu_co8278535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072110
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG035000 Rh5BG033500 Rh5CG037400 Rh5DG033700
rosa_wichuraiana	Rw5G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	260
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	78, 86
AsiGI	ACCGGT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	68
BbsI	GAAGAC	2 cut(s)	210, 263
BbvI	GCAGC	2 cut(s)	73, 90
BccI	CCATC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	79, 87
BlsI	GCNGC	2 cut(s)	80, 88
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	2 cut(s)	210, 263
BpmI	CTGGAG	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	3 cut(s)	61, 214, 217
BseXI	GCAGC	2 cut(s)	73, 90
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	58, 239
Bsp68I	TCGCGA	1 cut(s)	247
BspANI	GGCC	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	58, 239
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	61, 242
BstMBI	GATC	2 cut(s)	58, 239
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 286
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	73, 90
BstV2I	GAAGAC	2 cut(s)	210, 263
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	35
BtuMI	TCGCGA	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	1 cut(s)	268
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	2 cut(s)	82, 124
CviJI	RGCY	5 cut(s)	86, 101, 133, 269, 289
CviKI_1	RGCY	5 cut(s)	86, 101, 133, 269, 289
DpnI	GATC	2 cut(s)	60, 241
DpnII	GATC	2 cut(s)	58, 239
Eco130I	CCWWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	85, 127
FaiI	YATR	5 cut(s)	83, 125, 274, 276, 310
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	81, 123
Fnu4HI	GCNGC	2 cut(s)	79, 87
Fsp4HI	GCNGC	2 cut(s)	79, 87
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	79, 87
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	85, 127
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	68
Hpy188III	TCNNGA	3 cut(s)	107, 237, 246
Hpy99I	CGWCG	2 cut(s)	238, 247
HpyAV	CCTTC	2 cut(s)	57, 164
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 286
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	85, 127
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	58, 239
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	4 cut(s)	23, 67, 88, 143
Lsp1109I	GCAGC	2 cut(s)	73, 90
MalI	GATC	2 cut(s)	60, 241
MboI	GATC	2 cut(s)	58, 239
MboII	GAAGA	3 cut(s)	204, 210, 268
MluCI	AATT	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	82, 112, 168, 189, 232, 235, 238
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	124, 286
NdeII	GATC	2 cut(s)	58, 239
NlaIII	CATG	2 cut(s)	85, 127
NlaIV	GGNNCC	1 cut(s)	288
NruI	TCGCGA	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	8
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	80, 88
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	99
RruI	TCGCGA	1 cut(s)	247
SatI	GCNGC	2 cut(s)	79, 87
Sau3AI	GATC	2 cut(s)	58, 239
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	62
SetI	ASST	4 cut(s)	156, 171, 207, 303
SgrAI	CRCCGGYG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	95
TaqI	TCGA	2 cut(s)	61, 236
TasI	AATT	1 cut(s)	142
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	2 cut(s)	78, 86
TspDTI	ATGAA	2 cut(s)	17, 269
TspRI	CASTG	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.