Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010970

Physical Location & Seq

Genomic Coordinates Reverse (-)

1191759 .. 1194779

Gene Structure 3021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G025100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAACCAAGATTTTCAAATACTTCTCTCAAATGTTTGTTGTGAAAGAGCGTGAAATGGAAATTGGGTACCCAACAGATGTGAAACATGTAGCACACATTGGCTGGGAAGGCCCATCTGATAGCGCTCCCACTTGGATGAACGAATTTAAAAATGGACCAGATTTCTCAACCAGCTCGCTTGGTAGTAACGCTGGGGATCGGATGGGTTCCTCTAATCCTATGGCTTATTCTCCTTGGTCCTCTCAAGATTTTGAGCATTCGATGGGACACCAACCGTCCTCGGATATGTTCAGAGACCTTCCTCGTAGTGAACTTCCTAATGTGCCCAAGAAACCAAAGCGGAAAAAGGTCAAGTCTTCGTCTCCCTCAGCATCAAGATCCTCAAGAGCAACAAAGTCAAAGGCGACTGCATACACCCAAATGGAGGCAACACAAAACCTGCTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

9.49

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61795 AT4G04900 AT4G04900 AT4G21745
fragaria_vesca	FvH4_3g02570 FvH4_3g02570
malus_domestica	MD05G1341900.v1.1
prunus_persica	Prupe.4G025100_v2.0.a1 Prupe.4G025100_v2.0.a1
pyrus_communis	pycom05g31130
rosa_chinensis	RchiOBHm_Chr5g0003861
rosa_laevigata	RLG00000031184
rosa_multiflora	Rmu_co8278535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072110
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG035000 Rh5BG033500 Rh5CG037400 Rh5DG033700
rosa_wichuraiana	Rw5G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	2 cut(s)	207, 375
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	1 cut(s)	71
AfeI	AGCGCT	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	427
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	291, 369
AlwI	GGATC	2 cut(s)	207, 375
Aor51HI	AGCGCT	1 cut(s)	127
AoxI	GGCC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	113, 158, 240
AvaII	GGWCC	2 cut(s)	158, 240
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	124, 199, 259
BcoDI	GTCTC	2 cut(s)	291, 369
BfoI	RGCGCY	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	158, 240
BmgT120I	GGNCC	3 cut(s)	113, 158, 240
BmiI	GGNNCC	2 cut(s)	71, 211
BmsI	GCATC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	231, 370
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	236, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	236, 282
BseGI	GGATG	2 cut(s)	144, 210
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	330
BseYI	CCCAGC	2 cut(s)	105, 194
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	291, 369
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	199, 380
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	71, 211
BspPI	GGATC	2 cut(s)	207, 375
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	236, 282
BssMI	GATC	2 cut(s)	199, 380
BssT1I	CCWWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	144, 210
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	202, 383
BstMAI	GTCTC	2 cut(s)	291, 369
BstMBI	GATC	2 cut(s)	199, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	330
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	144, 210
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	113, 158, 240
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	4 cut(s)	105, 114, 177, 227
CviKI_1	RGCY	4 cut(s)	105, 114, 177, 227
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	2 cut(s)	201, 382
DpnII	GATC	2 cut(s)	199, 380
DraI	TTTAAA	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	158, 240
Eco47III	AGCGCT	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 224, 290, 415, 451
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	88
FokI	GGATG	2 cut(s)	151, 217
GlaI	GCGC	1 cut(s)	127
GsaI	CCCAGC	2 cut(s)	109, 198
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	4 cut(s)	121, 204, 286, 296
Hpy188III	TCNNGA	3 cut(s)	248, 378, 387
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	104, 311
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	199, 380
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	4 cut(s)	91, 174, 180, 187
LweI	GCATC	1 cut(s)	383
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	201, 382
MboI	GATC	2 cut(s)	199, 380
MboII	GAAGA	1 cut(s)	351
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	2 cut(s)	63, 146
MnlI	CCTC	7 cut(s)	223, 253, 292, 315, 379, 394, 421
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	137, 422
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	111
NdeII	GATC	2 cut(s)	199, 380
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	71, 211
NspI	RCATGY	1 cut(s)	92
PciI	ACATGT	1 cut(s)	88
PctI	GAATGC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	88
PspFI	CCCAGC	2 cut(s)	105, 194
PspN4I	GGNNCC	2 cut(s)	71, 211
PspPI	GGNCC	3 cut(s)	113, 158, 240
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	137, 422
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	199, 380
Sau96I	GGNCC	3 cut(s)	113, 158, 240
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	179, 303, 354, 444
SfaNI	GCATC	1 cut(s)	383
SinI	GGWCC	2 cut(s)	158, 240
SmiMI	CAYNNNNRTG	2 cut(s)	137, 422
SmlI	CTYRAG	2 cut(s)	246, 385
SmoI	CTYRAG	2 cut(s)	246, 385
Sse9I	AATT	2 cut(s)	63, 146
SsiI	CCGC	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	263
TasI	AATT	2 cut(s)	63, 146
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	158, 240
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.