Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010970

Physical Location & Seq

Genomic Coordinates Reverse (-)

2367950 .. 2369497

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCAAGATTTTCAAATACATCTCTCAAATATTTGTTGTGAAGGATCGTGAAATGGAAATTGGGTTCCCGACAGATGTGAAACATGTAGCTCACATTGGGTGGGATGGTCCGTCTGATAGTGCACCCAGTTGGATGAATGAGTTCAAAAATGGACCCGATTTCTCAACACTGGGTCGCAATAACACCAGTGATCGAAGGGACTCCTCCAGCAGCACGGCTCCTTCTCCTTGGGCCTCCCACGATTTTGAGCAATCCATGGGACGCCAGCCATCAACCAACTTGATAGACCTTCCTCCTAATGACCTTGCAAATGTTCCCAAGAAGCCAAAGCGGAAAAAGGTCAAATCTTCGTCTTCCTCTTCCTCATCATCGAGATCGTCACGACCAGTGAAGGCGTCAAAGGCTACATATACGCAAATGGAGCCTACACCAAACCTGCTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044424 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

149

Amino Acids

16.5

Weight (kDa)

9.69

Isoelectric Point (pI)

63.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61795 AT4G04900 AT4G04900 AT4G21745
fragaria_vesca	FvH4_3g02570 FvH4_3g02570
malus_domestica	MD05G1341900.v1.1
prunus_persica	Prupe.4G025100_v2.0.a1 Prupe.4G025100_v2.0.a1
pyrus_communis	pycom05g31130
rosa_chinensis	RchiOBHm_Chr5g0003861
rosa_laevigata	RLG00000031184
rosa_multiflora	Rmu_co8278535.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072110
rosa_rugosa	Rorug04G0407500
rosa_samantha	Rh5AG035000 Rh5BG033500 Rh5CG037400 Rh5DG033700
rosa_wichuraiana	Rw5G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	265, 398
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	16, 148
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	3, 234
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	110, 155, 234
AvaII	GGWCC	2 cut(s)	110, 155
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	101, 280
BceAI	ACGGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	110, 155
BmgT120I	GGNCC	3 cut(s)	110, 155, 234
BmiI	GGNNCC	4 cut(s)	68, 157, 222, 426
BmrI	ACTGGG	2 cut(s)	123, 182
BmuI	ACTGGG	2 cut(s)	123, 182
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	265, 398
BsaJI	CCNNGG	2 cut(s)	230, 258
Bse1I	ACTGG	4 cut(s)	129, 177, 189, 389
BseDI	CCNNGG	2 cut(s)	230, 258
BseGI	GGATG	2 cut(s)	112, 141
BseNI	ACTGG	4 cut(s)	129, 177, 189, 389
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	2 cut(s)	5, 236
BsiHKAI	GWGCWC	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	215, 276
BsmFI	GGGAC	2 cut(s)	215, 276
BsnI	GGCC	2 cut(s)	5, 236
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	46, 193, 377
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	5, 236
BspLI	GGNNCC	4 cut(s)	68, 157, 222, 426
BspPI	GGATC	1 cut(s)	54
BsrI	ACTGG	4 cut(s)	129, 177, 189, 389
BssECI	CCNNGG	2 cut(s)	230, 258
BssMI	GATC	3 cut(s)	46, 193, 377
BssNI	GRCGYC	2 cut(s)	265, 398
BssT1I	CCWWGG	2 cut(s)	230, 258
Bst6I	CTCTTC	1 cut(s)	367
BstACI	GRCGYC	2 cut(s)	265, 398
BstC8I	GCNNGC	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	112, 141
BstKTI	GATC	3 cut(s)	49, 196, 380
BstMBI	GATC	3 cut(s)	46, 193, 377
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 424
BstNSI	RCATGY	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	5, 236
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	112, 141
BtsIMutI	CAGTG	3 cut(s)	170, 196, 396
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	110, 155, 234
CseI	GACGC	2 cut(s)	273, 387
CviAII	CATG	2 cut(s)	86, 259
CviJI	RGCY	8 cut(s)	5, 92, 221, 236, 271, 328, 407, 427
CviKI_1	RGCY	8 cut(s)	5, 92, 221, 236, 271, 328, 407, 427
DpnI	GATC	3 cut(s)	48, 195, 379
DpnII	GATC	3 cut(s)	46, 193, 377
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	230, 258
Eco47I	GGWCC	2 cut(s)	110, 155
EcoT14I	CCWWGG	2 cut(s)	230, 258
ErhI	CCWWGG	2 cut(s)	230, 258
FaeI	CATG	2 cut(s)	89, 262
FaiI	YATR	5 cut(s)	87, 260, 412, 414, 448
FaqI	GGGAC	2 cut(s)	215, 276
FatI	CATG	2 cut(s)	85, 258
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	119, 148
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	5, 236
HgaI	GACGC	2 cut(s)	273, 387
Hin1I	GRCGYC	2 cut(s)	265, 398
Hin1II	CATG	2 cut(s)	89, 262
HinfI	GANTC	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	4 cut(s)	50, 70, 375, 384
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	5 cut(s)	37, 192, 234, 302, 388
HpyCH4V	TGCA	2 cut(s)	125, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 424
Hsp92I	GRCGYC	2 cut(s)	265, 398
Hsp92II	CATG	2 cut(s)	89, 262
Kzo9I	GATC	3 cut(s)	46, 193, 377
LmnI	GCTCC	2 cut(s)	226, 424
LpnPI	CCDG	6 cut(s)	142, 158, 202, 223, 281, 402
Lsp1109I	GCAGC	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	3 cut(s)	48, 195, 379
MboI	GATC	3 cut(s)	46, 193, 377
MboII	GAAGA	3 cut(s)	342, 348, 354
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	217, 247, 306, 370, 376
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	404, 424
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	46, 193, 377
NlaIII	CATG	2 cut(s)	89, 262
NlaIV	GGNNCC	4 cut(s)	68, 157, 222, 426
NmuCI	GTSAC	1 cut(s)	381
NspI	RCATGY	1 cut(s)	89
PciI	ACATGT	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	68, 157, 222, 426
PspPI	GGNCC	3 cut(s)	110, 155, 234
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	46, 193, 377
Sau96I	GGNCC	3 cut(s)	110, 155, 234
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	5 cut(s)	94, 294, 309, 345, 441
SinI	GGWCC	2 cut(s)	110, 155
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	334
SspI	AATATT	1 cut(s)	33
StyI	CCWWGG	2 cut(s)	230, 258
TaqI	TCGA	2 cut(s)	196, 374
TasI	AATT	1 cut(s)	60
TscAI	CASTG	3 cut(s)	177, 196, 396
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	3 cut(s)	177, 196, 396
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	110, 155
XceI	RCATGY	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.