Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007374

Physical Location & Seq

Genomic Coordinates Forward (+)

23056386 .. 23058114

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCAAAGAAGGTTTAATCGCAGCCAAAGAGCTCAAGCGTCTCCAAACCCAATCAGTCCGACTTGATCGATTCATTGGTTCTCATGTCTCTCGTCTCCTTAAATCCGATCTCGTTTCCGTTCTTGCTGAATTTCAGAGACAAAACCAAGTGTTCCTCTGTATGAAGCTCTATGAAGTAGTGAGGAGAGAAATATGGTACAGACCGGACATGTTTTTTTACAGAGACATGCTAATGATGCTTGCAAGAAACAAGAAAGTTGATGAAACCAAGAAAGTATGGGAAGATTTAAAGAAAGAAGAGGTTTTGTTTGATCAACATACATTTGGAGACCTTGTTCGAGGGTTCTTGGATAATGAACTTCCTTTAGAAGCAATGAGATTGTATGGAGAGATGAGAGAGTCTCCTGACCGGCCTTTATCTCTGCCTTTTCGAGTTATTTTGAAAGGACTCGTTCCTTATCCTGAGTTGAGAGAGAAAGTTAAAGATGATTTCTTGGAGCTTTTCCCTGGAATGATTGTATACGATCCTCCTGAGGATATATGTGAAGATAGTGATGAAGAAGCAAGAACAGATAGCGATCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

196

Amino Acids

23.29

Weight (kDa)

5.05

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62350 AT1G62350 AT1G62350
fragaria_vesca	FvH4_3g28730
malus_domestica	MD11G1184300.v1.1 MD11G1184600.v1.1
prunus_persica	Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1
pyrus_communis	pycom12g08820
rosa_chinensis	RchiOBHm_Chr5g0052331
rosa_laevigata	RLG00000034824
rosa_multiflora	Rmu_sc0000968.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028240
rosa_rugosa	Rorug05G0272700 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800
rosa_samantha	Rh5AG345300 Rh5BG356400 Rh5CG381700 Rh5DG371500
rosa_wichuraiana	Rw5G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	445, 587
AjnI	CCWGG	1 cut(s)	508
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	3 cut(s)	34, 169, 502
AluI	AGCT	3 cut(s)	34, 169, 502
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	7 cut(s)	47, 94, 101, 133, 219, 324, 408
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	510
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	7 cut(s)	47, 94, 101, 133, 219, 324, 408
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpuEI	CTTGAG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bse118I	RCCGGY	1 cut(s)	411
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	579
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	456, 525
BseRI	GAGGAG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	415
BshVI	ATCGAT	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	206, 412
BsmAI	GTCTC	7 cut(s)	47, 94, 101, 133, 219, 324, 408
BsmBI	CGTCTC	2 cut(s)	47, 101
BsnI	GGCC	1 cut(s)	415
Bso31I	GGTCTC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	67, 109, 313, 526, 580
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	2 cut(s)	457, 526
BspDI	ATCGAT	1 cut(s)	70
BspPI	GGATC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	67, 109, 313, 526, 580
BssNAI	GTATAC	1 cut(s)	523
Bst1107I	GTATAC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	465, 534
BstKTI	GATC	5 cut(s)	70, 112, 316, 529, 583
BstMAI	GTCTC	7 cut(s)	47, 94, 101, 133, 219, 324, 408
BstMBI	GATC	5 cut(s)	67, 109, 313, 526, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	214, 232
BstSCI	CCNGG	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	415
BsuTUI	ATCGAT	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	411
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	3 cut(s)	86, 211, 229
CviJI	RGCY	5 cut(s)	26, 34, 169, 415, 502
CviKI_1	RGCY	5 cut(s)	26, 34, 169, 415, 502
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	465, 534
DpnI	GATC	5 cut(s)	69, 111, 315, 528, 582
DpnII	GATC	5 cut(s)	67, 109, 313, 526, 580
DraI	TTTAAA	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	36
Esp3I	CGTCTC	2 cut(s)	47, 101
FaeI	CATG	3 cut(s)	89, 214, 232
FatI	CATG	3 cut(s)	85, 210, 228
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	2 cut(s)	206, 412
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	89, 214, 232
HinfI	GANTC	3 cut(s)	72, 401, 450
HpaII	CCGG	2 cut(s)	206, 412
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	3 cut(s)	62, 109, 138
Hpy188III	TCNNGA	4 cut(s)	407, 464, 533, 584
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	2 cut(s)	465, 534
Hsp92II	CATG	3 cut(s)	89, 214, 232
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	67, 109, 313, 526, 580
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	7 cut(s)	219, 420, 425, 477, 495, 522, 546
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	228
MalI	GATC	5 cut(s)	69, 111, 315, 528, 582
MboI	GATC	5 cut(s)	67, 109, 313, 526, 580
MboII	GAAGA	4 cut(s)	296, 311, 560, 572
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	410, 444
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	167, 177, 295, 335, 529, 540
MseI	TTAA	4 cut(s)	17, 102, 290, 483
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	2 cut(s)	206, 412
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	5 cut(s)	67, 109, 313, 526, 580
NlaIII	CATG	3 cut(s)	89, 214, 232
NspI	RCATGY	2 cut(s)	214, 232
PciI	ACATGT	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	2 cut(s)	409, 444
PpsI	GAGTC	2 cut(s)	409, 444
PscI	ACATGT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	17, 102, 290, 483
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	67, 109, 313, 526, 580
SchI	GAGTC	2 cut(s)	410, 444
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	6 cut(s)	16, 36, 171, 306, 336, 504
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	508
TaqI	TCGA	3 cut(s)	70, 340, 433
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	4 cut(s)	17, 102, 290, 483
Tru9I	TTAA	4 cut(s)	17, 102, 290, 483
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	6 cut(s)	64, 179, 189, 279, 372, 573
TspGWI	ACGGA	1 cut(s)	109
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	2 cut(s)	214, 232
XmiI	GTMKAC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.