Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007374

Physical Location & Seq

Genomic Coordinates Forward (+)

24699630 .. 24709123

Gene Structure 9494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1184600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCATCTCCAGAGTCTTCAGAATGTAATGCACTCTATCGACCGTGCAACCTGAATGTAATGTTACGCCTGGTTCAAAATCTTGTTCGAAGAAGCTCACCTACAACCCCTGCACTCTCACCCTCACCCCCCTATCTCGATTTTTCAGTGCATTTGTTGCTCCAGAACACTTGCTTGCAACGTTATTTCTCTGGGGGGTCAAAGGCGTCGGCGTCACGCCCTAGTCTCTCCATATGGAGGCGCAAGAAAGAGATGGGGAAGGAAGGTCTCATGGTGGCTAAGGAGCTCAAGAGGCTCCGCTCTCAGCCTCTCCGCCTTGACCACTTCATTCGCTCCCATGTCTCCCGCTTGCTCAAGTCCGATCTCCTCGCTGTTCTCGCCGAGTTCCAGAGACAAGACCAGGTCTTTCTCTCTATCAAGATATATGATGTGGTTCGTAAAGAGATTTGGTATAGACCGGACATGTTCTTTTATAGGGACATGCTTATGATGCTTGCAAGAAACAAAAAGGTGGATGAAGCAAAGAAGGTTTGGGGAGATCTGAAGAGAGAGGAAGTTTTATTTGATCAGCATACTTTCGGGGACATCATGAGGGCTTTCCTAGATAGTGGTTTGCCCTTGGAGGCAATGGAGATATATGGTGAAATGAGACAATCACCTGATCCTCCAATCTCATTGCCGTTTAGGGTAATATTGAAGGGCCTCCTCCCGTACCCAGAACTGAGGGAGAAGGTGAAAGATGACTTCTTGGAGCTATTTCCTGATATGATCGTCTATGACCCACCTGAAGACTTATTTGAAGACAAAGAATGGAAAAGAGAGAGTGAAGATGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

280

Amino Acids

32.75

Weight (kDa)

6.93

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62350 AT1G62350 AT1G62350
fragaria_vesca	FvH4_3g28730
malus_domestica	MD11G1184300.v1.1 MD11G1184600.v1.1
prunus_persica	Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1
pyrus_communis	pycom12g08820
rosa_chinensis	RchiOBHm_Chr5g0052331
rosa_laevigata	RLG00000034824
rosa_multiflora	Rmu_sc0000968.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028240
rosa_rugosa	Rorug05G0272700 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800
rosa_samantha	Rh5AG345300 Rh5BG356400 Rh5CG381700 Rh5DG371500
rosa_wichuraiana	Rw5G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	300
AciI	CCGC	3 cut(s)	298, 313, 346
AclI	AACGTT	1 cut(s)	181
AclWI	GGATC	1 cut(s)	656
AcuI	CTGAAG	2 cut(s)	563, 807
AcyI	GRCGYC	2 cut(s)	206, 212
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	77, 697, 800
AjnI	CCWGG	2 cut(s)	69, 399
AluBI	AGCT	3 cut(s)	96, 286, 754
AluI	AGCT	3 cut(s)	96, 286, 754
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	5 cut(s)	230, 272, 346, 385, 643
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	700
AsuHPI	GGTGA	6 cut(s)	90, 111, 117, 648, 653, 745
AsuII	TTCGAA	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	85, 117
BbsI	GAAGAC	3 cut(s)	9, 795, 807
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	2 cut(s)	13, 247
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	2 cut(s)	71, 401
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	5 cut(s)	230, 272, 346, 385, 643
BfaI	CTAG	2 cut(s)	222, 602
BglII	AGATCT	1 cut(s)	538
Bme1390I	CCNGG	2 cut(s)	71, 401
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	71, 401
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	3 cut(s)	9, 795, 807
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	2 cut(s)	272, 338
BsaHI	GRCGYC	2 cut(s)	206, 212
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	618
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	633, 674
BseBI	CCWGG	2 cut(s)	71, 401
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	633, 674
BseMII	CTCAG	2 cut(s)	317, 713
BseRI	GAGGAG	2 cut(s)	356, 695
BsgI	GTGCAG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	491, 596
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	5 cut(s)	230, 272, 346, 385, 643
BsmFI	GGGAC	2 cut(s)	491, 596
BsnI	GGCC	1 cut(s)	702
Bso31I	GGTCTC	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	5 cut(s)	361, 538, 565, 661, 768
BspACI	CCGC	3 cut(s)	298, 313, 346
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	2 cut(s)	316, 714
BspHI	TCATGA	1 cut(s)	588
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	656
BspT104I	TTCGAA	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	633, 674
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	5 cut(s)	361, 538, 565, 661, 768
BssNI	GRCGYC	2 cut(s)	206, 212
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	2 cut(s)	71, 401
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	2 cut(s)	206, 212
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	176, 350, 495
BstDEI	CTNAG	3 cut(s)	279, 303, 722
BstF5I	GGATG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	5 cut(s)	364, 541, 568, 664, 771
BstMAI	GTCTC	5 cut(s)	230, 272, 346, 385, 643
BstMBI	GATC	5 cut(s)	361, 538, 565, 661, 768
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 292, 377, 490
BstNI	CCWGG	2 cut(s)	71, 401
BstNSI	RCATGY	2 cut(s)	466, 484
BstSCI	CCNGG	2 cut(s)	69, 399
BstV2I	GAAGAC	3 cut(s)	9, 795, 807
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	176, 350, 495
CciI	TCATGA	1 cut(s)	588
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	2 cut(s)	195, 201
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	5 cut(s)	271, 338, 463, 481, 589
CviJI	RGCY	8 cut(s)	96, 278, 286, 295, 307, 596, 702, 754
CviKI_1	RGCY	8 cut(s)	96, 278, 286, 295, 307, 596, 702, 754
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	3 cut(s)	279, 303, 722
DpnI	GATC	5 cut(s)	363, 540, 567, 663, 770
DpnII	GATC	5 cut(s)	361, 538, 565, 661, 768
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
EciI	GGCGGA	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	563, 807
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	69, 399
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	5 cut(s)	274, 341, 466, 484, 592
FaqI	GGGAC	2 cut(s)	491, 596
FatI	CATG	5 cut(s)	270, 337, 462, 480, 588
FauI	CCCGC	1 cut(s)	353
FauNDI	CATATG	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	565
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	288
FspBI	CTAG	2 cut(s)	222, 602
GlaI	GCGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	2 cut(s)	195, 201
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	2 cut(s)	206, 212
Hin1II	CATG	5 cut(s)	274, 341, 466, 484, 592
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	6 cut(s)	90, 111, 117, 648, 653, 745
Hpy188I	TCNGA	3 cut(s)	22, 361, 543
Hpy188III	TCNNGA	8 cut(s)	11, 137, 163, 289, 388, 418, 589, 761
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	253, 257, 520, 691, 724
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	32, 48, 113, 151, 178, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 292, 377, 490
HpyF3I	CTNAG	3 cut(s)	279, 303, 722
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	206, 212
Hsp92II	CATG	5 cut(s)	274, 341, 466, 484, 592
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	361, 538, 565, 661, 768
LmnI	GCTCC	5 cut(s)	165, 283, 300, 338, 751
LweI	GCATC	1 cut(s)	480
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	2 cut(s)	222, 602
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	63, 213
MalI	GATC	5 cut(s)	363, 540, 567, 663, 770
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	5 cut(s)	361, 538, 565, 661, 768
MboII	GAAGA	6 cut(s)	9, 102, 556, 800, 812, 839
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	71, 401
MvaI	CCWGG	2 cut(s)	71, 401
MwoI	GCNNNNNNNGC	4 cut(s)	157, 292, 377, 490
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	5 cut(s)	361, 538, 565, 661, 768
NlaIII	CATG	5 cut(s)	274, 341, 466, 484, 592
NlaIV	GGNNCC	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	2 cut(s)	466, 484
NspV	TTCGAA	1 cut(s)	88
PagI	TCATGA	1 cut(s)	588
PciI	ACATGT	1 cut(s)	462
PflFI	GACNNNGTC	1 cut(s)	401
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	288
Psp1406I	AACGTT	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	69, 399
PspGI	CCWGG	2 cut(s)	69, 399
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	401
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	288
Sau3AI	GATC	5 cut(s)	361, 538, 565, 661, 768
Sau96I	GGNCC	1 cut(s)	700
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	71, 401
SduI	GDGCHC	1 cut(s)	288
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	287, 353
SmoI	CTYRAG	2 cut(s)	287, 353
SsiI	CCGC	3 cut(s)	298, 313, 346
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	2 cut(s)	222, 602
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	69, 399
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	40, 88, 138
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	316, 531
TspRI	CASTG	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	401
XceI	RCATGY	2 cut(s)	466, 484
XspI	CTAG	2 cut(s)	222, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.