Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007374

Physical Location & Seq

Genomic Coordinates Reverse (-)

56096235 .. 56101443

Gene Structure 5209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG371500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATGATGATTGTTTTGAGTCCTTTAGTCTTGGCTAGACTTGGTGGAGCTCAGAAGAATTGGATTGATAATGGTGTTGGCGTTATCTTACTATCTAGTTCACACATTGAAAACCCAATTGGCACTCATGGAGTGCGTGTCCAAGGAATAGTGACTAATTATAAGGAGGCTAGTGCTTTGAGCTTCATCTTATCCTTAGCCGGAGTTAAACATTTTGTAATGTTACGCCTGGCTTCCAATATTCTACAAAGAAGCTCATCTAGAACTCTTGCATCATCTCGTGATTTCTCATTGCAATTGTTACTCCAACATATTTGCCCACAGCAACAAGACGATTTCCAGCACCAACAACGGAGTTGTTACTTTGGGCAGTCAAAGGCGTCGAGCCCTAGCCTCTCGATATGGAGGCGCAAGAAAGAGATGGGCAAGGAGGGCCTCATCGTCGCTAAGGAGCTCAAAAGGCTCCGCTCTCAGCCCCTCCGCCTCGATCGCTTCATACGCTCCCACGTGTCCCGTTTGCTCAAGTCTGATCTTCTGGCTGTTCTTGCCGAGTTTCAGAGACAAGACCAGGTCTTTCTCTGTATGAAGATCTACAATGTGGTGCGCAAAGAGATTTGGTATCGACCAGACATGTTCTTTTACAGGGACATGCTTATGATGCTTGCAAGAAATAGAAAGGTGGATGAAGCAAAGCAAGTTTGGGAAGATTTGAAGGGGGAAGAAGTTTTGTTTGATCAGCATACTTTTGGGGATATTATTAGGGCTTTTCTAGAAAGTGAATTGCCCTCGGAAGCAATGGGTATATACGATGAAATGAGAGGATCTCCTGAACCCCCTATATCACTGGCATTTAGAGTTATATTGAAAGGGCTTCTTCCATACCCAGAATTGCGGGAGAAGGTGAAAGCTGACTTCTTGGAGTTATTTCCAGATATGATTGTCTATGACCCCCCTGAAGATTTGTTTGAAGATCAAGAATGGAAAAGTGAAAGCAAAGATGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

335

Amino Acids

38.79

Weight (kDa)

7.72

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62350 AT1G62350 AT1G62350
fragaria_vesca	FvH4_3g28730
malus_domestica	MD11G1184300.v1.1 MD11G1184600.v1.1
prunus_persica	Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1
pyrus_communis	pycom12g08820
rosa_chinensis	RchiOBHm_Chr5g0052331
rosa_laevigata	RLG00000034824
rosa_multiflora	Rmu_sc0000968.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028240
rosa_rugosa	Rorug05G0272700 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800
rosa_samantha	Rh5AG345300 Rh5BG356400 Rh5CG381700 Rh5DG371500
rosa_wichuraiana	Rw5G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
Acc16I	TGCGCA	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	468
AciI	CCGC	3 cut(s)	466, 481, 892
AclWI	GGATC	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	975
AcvI	CACGTG	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	380
AflIII	ACRYGT	2 cut(s)	507, 630
AgsI	TTSAA	4 cut(s)	110, 712, 865, 968
AjnI	CCWGG	2 cut(s)	228, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	5 cut(s)	50, 183, 255, 454, 908
AluI	AGCT	5 cut(s)	50, 183, 255, 454, 908
Alw21I	GWGCWC	2 cut(s)	52, 456
Alw26I	GTCTC	1 cut(s)	553
AlwI	GGATC	1 cut(s)	829
AoxI	GGCC	1 cut(s)	433
AspLEI	GCGC	2 cut(s)	411, 606
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	913
BanII	GRGCYC	3 cut(s)	52, 389, 456
BauI	CACGAG	1 cut(s)	279
BbrPI	CACGTG	1 cut(s)	508
Bbv12I	GWGCWC	2 cut(s)	52, 456
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	230, 569
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	6 cut(s)	36, 96, 171, 261, 390, 770
BglII	AGATCT	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	230, 569
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	2 cut(s)	230, 569
BmsI	GCATC	2 cut(s)	281, 648
BplI	GAGNNNNNCTC	2 cut(s)	808, 840
Bpu10I	CCTNAGC	2 cut(s)	196, 447
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	142, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bse1I	ACTGG	1 cut(s)	849
Bse3DI	GCAATG	2 cut(s)	290, 801
BseBI	CCWGG	2 cut(s)	230, 569
BseDI	CCNNGG	2 cut(s)	142, 786
BseGI	GGATG	1 cut(s)	688
BseMI	GCAATG	2 cut(s)	290, 801
BseMII	CTCAG	2 cut(s)	65, 485
BseNI	ACTGG	1 cut(s)	849
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	52, 456
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	496, 659
BsmAI	GTCTC	1 cut(s)	553
BsmFI	GGGAC	2 cut(s)	496, 659
BsnI	GGCC	1 cut(s)	435
Bsp1286I	GDGCHC	3 cut(s)	52, 389, 456
Bsp143I	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
BspACI	CCGC	3 cut(s)	466, 481, 892
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	2 cut(s)	64, 484
BspLI	GGNNCC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	829
BsrBI	CCGCTC	1 cut(s)	468
BsrDI	GCAATG	2 cut(s)	290, 801
BsrI	ACTGG	1 cut(s)	849
BssECI	CCNNGG	2 cut(s)	142, 786
BssMI	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	230, 569
BstACI	GRCGYC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	4 cut(s)	51, 196, 447, 471
BstF5I	GGATG	1 cut(s)	688
BstHHI	GCGC	2 cut(s)	411, 606
BstKTI	GATC	6 cut(s)	490, 532, 591, 736, 824, 973
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	6 cut(s)	432, 460, 489, 498, 545, 658
BstNI	CCWGG	2 cut(s)	230, 569
BstNSI	RCATGY	2 cut(s)	634, 652
BstSCI	CCNGG	2 cut(s)	228, 567
BstX2I	RGATCY	2 cut(s)	588, 821
BstYI	RGATCY	2 cut(s)	588, 821
BsuRI	GGCC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	842
Cac8I	GCNNGC	1 cut(s)	663
CfoI	GCGC	2 cut(s)	411, 606
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	369
CsiI	ACCWGGT	1 cut(s)	567
CviAII	CATG	3 cut(s)	128, 631, 649
DdeI	CTNAG	4 cut(s)	51, 196, 447, 471
DpnI	GATC	6 cut(s)	489, 531, 590, 735, 823, 972
DpnII	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
EciI	GGCGGA	1 cut(s)	470
Ecl136II	GAGCTC	2 cut(s)	50, 454
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	3 cut(s)	52, 389, 456
Eco53kI	GAGCTC	2 cut(s)	50, 454
Eco57I	CTGAAG	1 cut(s)	975
Eco72I	CACGTG	1 cut(s)	508
EcoICRI	GAGCTC	2 cut(s)	50, 454
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	228, 567
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	3 cut(s)	52, 389, 456
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	3 cut(s)	131, 634, 652
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	2 cut(s)	496, 659
FatI	CATG	3 cut(s)	127, 630, 648
FauI	CCCGC	1 cut(s)	885
FbaI	TGATCA	1 cut(s)	733
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	3 cut(s)	52, 389, 456
FspBI	CTAG	6 cut(s)	36, 96, 171, 261, 390, 770
FspI	TGCGCA	1 cut(s)	605
GlaI	GCGC	2 cut(s)	410, 605
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	2 cut(s)	411, 606
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	131, 634, 652
Hin6I	GCGC	2 cut(s)	409, 604
HinP1I	GCGC	2 cut(s)	409, 604
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	913
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	54, 529, 558, 790
Hpy188III	TCNNGA	7 cut(s)	261, 281, 397, 770, 827, 929, 974
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	385, 446
HpyAV	CCTTC	2 cut(s)	706, 892
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	3 cut(s)	272, 295, 665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	432, 460, 489, 498, 545, 658
HpyF3I	CTNAG	4 cut(s)	51, 196, 447, 471
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	131, 634, 652
HspAI	GCGC	2 cut(s)	409, 604
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
LmnI	GCTCC	4 cut(s)	47, 451, 468, 506
LweI	GCATC	2 cut(s)	281, 648
MabI	ACCWGGT	1 cut(s)	567
MaeI	CTAG	6 cut(s)	36, 96, 171, 261, 390, 770
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	4 cut(s)	151, 222, 300, 359
MalI	GATC	6 cut(s)	489, 531, 590, 735, 823, 972
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
MboII	GAAGA	8 cut(s)	67, 524, 598, 716, 731, 866, 968, 980
MfeI	CAATTG	2 cut(s)	117, 296
MflI	RGATCY	2 cut(s)	588, 821
MhlI	GDGCHC	3 cut(s)	52, 389, 456
MluCI	AATT	6 cut(s)	58, 117, 157, 296, 779, 887
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	9 cut(s)	160, 399, 404, 424, 446, 488, 494, 796, 812
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	230, 569
MunI	CAATTG	2 cut(s)	117, 296
MvaI	CCWGG	2 cut(s)	230, 569
MwoI	GCNNNNNNNGC	6 cut(s)	432, 460, 489, 498, 545, 658
NdeII	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
NlaIII	CATG	3 cut(s)	131, 634, 652
NlaIV	GGNNCC	1 cut(s)	464
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	151
NsbI	TGCGCA	1 cut(s)	605
NspI	RCATGY	2 cut(s)	634, 652
PciI	ACATGT	1 cut(s)	630
PflFI	GACNNNGTC	1 cut(s)	569
Ple19I	CGATCG	1 cut(s)	490
PleI	GAGTC	1 cut(s)	27
PmaCI	CACGTG	1 cut(s)	508
PmlI	CACGTG	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	508
PscI	ACATGT	1 cut(s)	630
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	2 cut(s)	52, 456
Psp6I	CCWGG	2 cut(s)	228, 567
PspCI	CACGTG	1 cut(s)	508
PspGI	CCWGG	2 cut(s)	228, 567
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	588, 821
PsyI	GACNNNGTC	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	2 cut(s)	52, 456
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	6 cut(s)	487, 529, 588, 733, 821, 970
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	230, 569
SduI	GDGCHC	3 cut(s)	52, 389, 456
SetI	ASST	9 cut(s)	52, 185, 257, 456, 510, 573, 681, 903, 910
SexAI	ACCWGGT	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	281, 648
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	58, 117, 157, 296, 779, 887
SsiI	CCGC	3 cut(s)	466, 481, 892
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	6 cut(s)	36, 96, 171, 261, 390, 770
SstI	GAGCTC	2 cut(s)	52, 456
StyD4I	CCNGG	2 cut(s)	228, 567
StyI	CCWWGG	1 cut(s)	142
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	4 cut(s)	383, 398, 486, 622
TasI	AATT	6 cut(s)	58, 117, 157, 296, 779, 887
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	175, 484, 599, 699, 825
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	849
Tth111I	GACNNNGTC	1 cut(s)	569
XbaI	TCTAGA	2 cut(s)	260, 769
XceI	RCATGY	2 cut(s)	634, 652
XspI	CTAG	6 cut(s)	36, 96, 171, 261, 390, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.