Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007374

Physical Location & Seq

Genomic Coordinates Forward (+)

10511239 .. 10515725

Gene Structure 4487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCCGCTTTAGCTGCTTTTGAGCGCCCCCTTCGACCTGCTGCTTCTAACACGGTGTTCAAGAGTGGCCCACTTTTCATATCTTCTAAAGTGCATTTGTTGCTCCAAAACACTTGCTTGCAACGTTATTTCTCTGGGGGGTCGAAGGCGTCGGCGTCAAGCCCTAGTCTCTCCATATGGAGGCGCAAGAAAGAGATGGGGAAGGAAGGTCTCATGGTGGCTAAGGAGCTCAAGAGGCTTCGCTCTCAGCCTCTCCGCCTTGACCACTTCATACGCTCCCATGTCTCCCGCTTGCTCAAGTCTGATCTCCTCGCTGTTCTCGCCGAGTTTCAGAGACAAGACCAGGTCTTTCTCTCTATGAAGATATATGATGTGGTTCGTAAAGAGATTTGGTATAGACCGGACATGTTCTTTTACAGGGACATGCTTATGATGCTTGCAAGAAACAAAAAGGTGGATGAAGCAAAGAAGGTTTGGGGAGATCTGAAGAGAGAGGAAGTTCTATTTGATCAGCATACTTTCGGGGACATCATCAGGGCTTTCCTAGATAGTGGTTTGCCCTCGGAGGCAATGGAGATATATGGTGAAATGAGACAATCACCTGATCCCCCAATCTCACTGCCGTTTAGAGTAATATTGAAGGGGCTCCTCCCGTACCCAGAATTGAGGGAGAAGGTGAAAGATGACTTCTTGGAGCTATTTCCTGATATGATCGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

241

Amino Acids

27.89

Weight (kDa)

9.52

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62350 AT1G62350 AT1G62350
fragaria_vesca	FvH4_3g28730
malus_domestica	MD11G1184300.v1.1 MD11G1184600.v1.1
prunus_persica	Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1
pyrus_communis	pycom12g08820
rosa_chinensis	RchiOBHm_Chr5g0052331
rosa_laevigata	RLG00000034824
rosa_multiflora	Rmu_sc0000968.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028240
rosa_rugosa	Rorug05G0272700 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800
rosa_samantha	Rh5AG345300 Rh5BG356400 Rh5CG381700 Rh5DG371500
rosa_wichuraiana	Rw5G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AciI	CCGC	3 cut(s)	6, 256, 289
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	2 cut(s)	149, 155
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	61, 640
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	14, 229, 697
AluI	AGCT	3 cut(s)	14, 229, 697
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	5 cut(s)	173, 215, 289, 328, 586
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	14, 41
AspLEI	GCGC	2 cut(s)	27, 186
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	591, 596, 688
BanII	GRGCYC	2 cut(s)	231, 648
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	5 cut(s)	173, 215, 289, 328, 586
BfaI	CTAG	2 cut(s)	165, 545
BfoI	RGCGCY	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	2 cut(s)	15, 42
BlsI	GCNGC	2 cut(s)	16, 43
Bme1390I	CCNGG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	647
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	215, 281
Bsa29I	ATCGAT	1 cut(s)	714
BsaHI	GRCGYC	2 cut(s)	149, 155
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	299, 638
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	69
BshVI	ATCGAT	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	2 cut(s)	434, 539
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	5 cut(s)	173, 215, 289, 328, 586
BsmFI	GGGAC	2 cut(s)	434, 539
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	231, 648
Bsp143I	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
BspACI	CCGC	3 cut(s)	6, 256, 289
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	259
BspDI	ATCGAT	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	647
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
BssNI	GRCGYC	2 cut(s)	149, 155
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	482
BstACI	GRCGYC	2 cut(s)	149, 155
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstC8I	GCNNGC	3 cut(s)	119, 293, 438
BstDEI	CTNAG	2 cut(s)	222, 246
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 186
BstKTI	GATC	6 cut(s)	307, 484, 511, 607, 714, 718
BstMAI	GTCTC	5 cut(s)	173, 215, 289, 328, 586
BstMBI	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 100, 235, 320, 433
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	2 cut(s)	409, 427
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	714
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	617
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	3 cut(s)	119, 293, 438
CfoI	GCGC	2 cut(s)	27, 186
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	2 cut(s)	138, 144
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	4 cut(s)	214, 281, 406, 424
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	2 cut(s)	222, 246
DpnI	GATC	6 cut(s)	306, 483, 510, 606, 713, 717
DpnII	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	2 cut(s)	231, 648
Eco31I	GGTCTC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	2 cut(s)	231, 648
FaeI	CATG	4 cut(s)	217, 284, 409, 427
FaqI	GGGAC	2 cut(s)	434, 539
FatI	CATG	4 cut(s)	213, 280, 405, 423
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	15, 42
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	2 cut(s)	231, 648
Fsp4HI	GCNGC	2 cut(s)	15, 42
FspBI	CTAG	2 cut(s)	165, 545
GlaI	GCGC	2 cut(s)	26, 185
GluI	GCNGC	2 cut(s)	15, 42
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	2 cut(s)	138, 144
HhaI	GCGC	2 cut(s)	27, 186
Hin1I	GRCGYC	2 cut(s)	149, 155
Hin1II	CATG	4 cut(s)	217, 284, 409, 427
Hin6I	GCGC	2 cut(s)	25, 184
HinP1I	GCGC	2 cut(s)	25, 184
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	3 cut(s)	591, 596, 688
Hpy188I	TCNGA	4 cut(s)	304, 333, 486, 565
Hpy188III	TCNNGA	3 cut(s)	61, 232, 704
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	7 cut(s)	41, 139, 196, 200, 463, 634, 667
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	94, 121, 440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 100, 235, 320, 433
HpyF3I	CTNAG	2 cut(s)	222, 246
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	2 cut(s)	149, 155
Hsp92II	CATG	4 cut(s)	217, 284, 409, 427
HspAI	GCGC	2 cut(s)	25, 184
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
LmnI	GCTCC	5 cut(s)	108, 226, 281, 651, 694
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	423
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	2 cut(s)	165, 545
MaeII	ACGT	1 cut(s)	124
MalI	GATC	6 cut(s)	306, 483, 510, 606, 713, 717
MboI	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
MboII	GAAGA	3 cut(s)	75, 373, 499
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	2 cut(s)	231, 648
MluCI	AATT	1 cut(s)	662
MnlI	CCTC	9 cut(s)	174, 228, 261, 320, 487, 559, 571, 659, 660
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	5 cut(s)	14, 100, 235, 320, 433
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
NlaIII	CATG	4 cut(s)	217, 284, 409, 427
NlaIV	GGNNCC	1 cut(s)	647
NmeAIII	GCCGAG	1 cut(s)	349
NspI	RCATGY	2 cut(s)	409, 427
PciI	ACATGT	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	16, 43
PscI	ACATGT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	481
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	15, 42
Sau3AI	GATC	6 cut(s)	304, 481, 508, 604, 711, 715
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	231, 648
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	230, 296
SmoI	CTYRAG	2 cut(s)	230, 296
Sse9I	AATT	1 cut(s)	662
SsiI	CCGC	3 cut(s)	6, 256, 289
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	2 cut(s)	165, 545
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	34, 143, 714
TasI	AATT	1 cut(s)	662
TscAI	CASTG	1 cut(s)	624
TseI	GCWGC	2 cut(s)	14, 41
TspDTI	ATGAA	4 cut(s)	67, 259, 374, 474
TspRI	CASTG	1 cut(s)	624
Tth111I	GACNNNGTC	1 cut(s)	344
XceI	RCATGY	2 cut(s)	409, 427
XspI	CTAG	2 cut(s)	165, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.