Rorug05G0272700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007374
Physical Location & Seq
Reverse (-)
30743032 .. 30744575
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0272700.1

Sequence Viewer

Length: 1335 bp
ATGGCTTTCAGTAATCGTACCAAGCCTCATGCTGTTTGTATACCAGGTCCGGCTCAAAGCCACATCAAGGCTATTCTTAAATTAGCCAAAGCCCTCCATCACAGAGGCTTTCACATAACCTTTGTCAACACAGAGTTCAACCACAGGAGATTTCTTAAATCTCAAGGACCCAACTCCCTCAATGGCTTACCTGATTTTCGCTTTAAAGCTATCCCGGATGGCATTCCAGAATCAGGTGAAGATGCCACCCAAGAGGTCACTTTGTCCTGCTTTACCACCACGGCTTCAGAAGAACTTGGAATCCCTATTGTATTGTTCTACACTATTTCTGCTTGCAGCTTCTTGGGATTCAGGAAATTCCGAACTTTGCTTGAGAAAGGACTCGTACCACTCAAAGATGAGACCTGTTTGACAAATGGGTTTCTGGACAACGTTATAGAATGGATTCCAGGAAAGAAAGATATGCATTTAAGGGATCTCCCATCCTTTTGTCGAACTACAGATCCAAATGACATCTTGTTCAACACAGTCATGGAAGCAGCTGAAAAAGCAAATAAAGCTTCAGCCGTTGTTCTTCACACATTTGATGCTTTGGAAAAAGACGTTTTGGAAGCCCTCTCCTCATCTATTTCTCCACCCATTTATGCAATTGGTCCTCTCCAATTGCTTCTCAATCAAATACCAGAAGACCCTTTAAAGCTTATGGGATACAATCTTTGGAAAGAAGAAACAGACTGTCTCCAATGGCTAAACTCCAAGGCACCAAACTCTGTTGTCTATGTTAATTTTGGCAGCATTGCGGTTTTGACACCCGAACAGCTGCTTGAGTTTGGTTGGGGACTTGCAAATACCAAGCTTCCCTTCTTCTGGGTCATTAGGCCTGACTTGGTCATTGGAAAGTCGGCAATCTTGCCACCAGAGTTTGAAGCTGAAACCAAAGACAGAGGTTTAATAGCAAGTTGGTGCCCCCAAGAACAAGTCCTAAACCATCCATCAGTTGGAGGGTTTCTAACACACAGTGGTTGGAATTCAAGCATCGAGAGTGTTACAGCTGGAGTGCCGATGGTGTGTTGGCCATTCTTTGCAGACCAGCATACAAACAGTTACTACACTTGCAATGAATGGGGAATTGGCATGGAGATCAATAACAAAGTCAAGAGAGACAATGTGGAGAAGATTGTCAAGGAGTTAATGGAGGGAGACAAGGGCAAGAAGATGAAAAACAAAGTCTTGGAGTGGAAGAAACTAGCAGAAGAAGCCACTGCTCCACATGGTTCTTCATCAAAAAACTTGAAGGATTTAGTGAATCAAGTCCTATTAAAAAAAGGCACTTAG

Protein Analysis

444

Amino Acids

49.52

Weight (kDa)

6.48

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 182 - 404 4.8e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 760, 963
AccB7I CCANNNNNTGG 1 cut(s) 998
AccI GTMKAC 1 cut(s) 40
AciI CCGC 1 cut(s) 800
AclI AACGTT 1 cut(s) 432
AclWI GGATC 2 cut(s) 483, 497
AcoI YGGCCR 1 cut(s) 1073
AcsI RAATTY 2 cut(s) 356, 1027
AcuI CTGAAG 2 cut(s) 270, 546
AdeI CACNNNGTG 1 cut(s) 1019
AfaI GTAC 2 cut(s) 19, 387
AfiI CCNNNNNNNGG 4 cut(s) 67, 233, 867, 998
AgsI TTSAA 5 cut(s) 139, 523, 926, 1032, 1294
AjnI CCWGG 2 cut(s) 43, 448
AjuI GAANNNNNNNTTGG 4 cut(s) 845, 877, 1113, 1145
AloI GAACNNNNNNTCC 4 cut(s) 285, 317, 487, 519
AluBI AGCT 9 cut(s) 209, 339, 542, 560, 700, 820, 856, 929, 1052
AluI AGCT 9 cut(s) 209, 339, 542, 560, 700, 820, 856, 929, 1052
Alw26I GTCTC 4 cut(s) 395, 743, 1155, 1194
AlwI GGATC 2 cut(s) 483, 497
AoxI GGCC 2 cut(s) 878, 1073
ApeKI GCWGC 4 cut(s) 336, 539, 792, 820
ApoI RAATTY 2 cut(s) 356, 1027
Asp700I GAANNNNTTC 1 cut(s) 444
AspS9I GGNCC 3 cut(s) 47, 167, 653
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 3 cut(s) 47, 167, 653
BaeGI GKGCMC 1 cut(s) 968
BalI TGGCCA 1 cut(s) 1075
BanI GGYRCC 2 cut(s) 760, 963
BbsI GAAGAC 1 cut(s) 693
BbvI GCAGC 4 cut(s) 348, 551, 804, 807
BccI CCATC 6 cut(s) 105, 212, 490, 996, 1000, 1057
BceAI ACGGC 2 cut(s) 297, 551
BciT130I CCWGG 2 cut(s) 45, 450
BciVI GTATCC 1 cut(s) 701
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 4 cut(s) 395, 743, 1155, 1194
BfaI CTAG 1 cut(s) 1247
BfmI CTRYAG 1 cut(s) 498
BfuI GTATCC 1 cut(s) 701
BisI GCNGC 4 cut(s) 337, 540, 793, 821
BlsI GCNGC 4 cut(s) 338, 541, 794, 822
Bme1390I CCNGG 3 cut(s) 45, 215, 450
Bme18I GGWCC 3 cut(s) 47, 167, 653
BmgT120I GGNCC 3 cut(s) 47, 167, 653
BmiI GGNNCC 3 cut(s) 169, 762, 965
BmrFI CCNGG 3 cut(s) 45, 215, 450
BmsI GCATC 3 cut(s) 232, 577, 1044
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 1074
BpuEI CTTGAG 3 cut(s) 147, 392, 845
BpuMI CCSGG 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 279, 756
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 233, 867, 998
Bse3DI GCAATG 2 cut(s) 795, 1123
BseBI CCWGG 2 cut(s) 45, 450
BseDI CCNNGG 2 cut(s) 279, 756
BseGI GGATG 3 cut(s) 223, 482, 988
BseLI CCNNNNNNNGG 4 cut(s) 67, 233, 867, 998
BseMI GCAATG 2 cut(s) 795, 1123
BseRI GAGGAG 1 cut(s) 610
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 4 cut(s) 348, 551, 804, 807
BshFI GGCC 2 cut(s) 880, 1075
BshNI GGYRCC 2 cut(s) 760, 963
BsiSI CCGG 2 cut(s) 50, 215
BslFI GGGAC 1 cut(s) 852
BslI CCNNNNNNNGG 4 cut(s) 67, 233, 867, 998
BsmAI GTCTC 4 cut(s) 395, 743, 1155, 1194
BsmFI GGGAC 1 cut(s) 852
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 2 cut(s) 880, 1075
Bso31I GGTCTC 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 968
Bsp143I GATC 3 cut(s) 475, 502, 1140
BspACI CCGC 1 cut(s) 800
BspANI GGCC 2 cut(s) 880, 1075
BspLI GGNNCC 3 cut(s) 169, 762, 965
BspPI GGATC 2 cut(s) 483, 497
BspT107I GGYRCC 2 cut(s) 760, 963
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 795, 1123
BssECI CCNNGG 2 cut(s) 279, 756
BssMI GATC 3 cut(s) 475, 502, 1140
BssNAI GTATAC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 756
Bst1107I GTATAC 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 45, 450
Bst4CI ACNGT 4 cut(s) 529, 737, 1019, 1103
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 1332
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 223, 482, 988
BstKTI GATC 3 cut(s) 478, 505, 1143
BstMAI GTCTC 4 cut(s) 395, 743, 1155, 1194
BstMBI GATC 3 cut(s) 475, 502, 1140
BstMWI GCNNNNNNNGC 3 cut(s) 548, 557, 1256
BstNI CCWGG 2 cut(s) 45, 450
BstSCI CCNGG 3 cut(s) 43, 213, 448
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 968
BstV1I GCAGC 4 cut(s) 348, 551, 804, 807
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 475, 502
BstYI RGATCY 2 cut(s) 475, 502
BstZ17I GTATAC 1 cut(s) 41
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 2 cut(s) 880, 1075
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 3 cut(s) 223, 482, 988
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 2 cut(s) 1024, 1260
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 3 cut(s) 47, 167, 653
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 2 cut(s) 18, 386
CviAII CATG 4 cut(s) 29, 532, 1135, 1271
CviQI GTAC 2 cut(s) 18, 386
DdeI CTNAG 1 cut(s) 1332
DpnI GATC 3 cut(s) 477, 504, 1142
DpnII GATC 3 cut(s) 475, 502, 1140
DraI TTTAAA 2 cut(s) 205, 696
DraIII CACNNNGTG 1 cut(s) 1019
EaeI YGGCCR 1 cut(s) 1073
Eco130I CCWWGG 1 cut(s) 756
Eco147I AGGCCT 1 cut(s) 880
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 3 cut(s) 47, 167, 653
Eco57I CTGAAG 2 cut(s) 270, 546
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 43, 448
EcoT14I CCWWGG 1 cut(s) 756
EcoT22I ATGCAT 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 4 cut(s) 32, 535, 1138, 1274
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 1 cut(s) 852
FatI CATG 4 cut(s) 28, 531, 1134, 1270
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 4 cut(s) 337, 540, 793, 821
FokI GGATG 3 cut(s) 230, 469, 975
Fsp4HI GCNGC 4 cut(s) 337, 540, 793, 821
FspBI CTAG 1 cut(s) 1247
GluI GCNGC 4 cut(s) 337, 540, 793, 821
GsuI CTGGAG 1 cut(s) 1074
HaeIII GGCC 2 cut(s) 880, 1075
HapII CCGG 2 cut(s) 50, 215
Hin1II CATG 4 cut(s) 32, 535, 1138, 1274
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 3 cut(s) 558, 698, 854
HinfI GANTC 6 cut(s) 230, 300, 348, 381, 445, 1306
HpaII CCGG 2 cut(s) 50, 215
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 41, 127
Hpy188I TCNGA 2 cut(s) 289, 362
Hpy188III TCNNGA 5 cut(s) 227, 352, 425, 1039, 1156
Hpy8I GTNNAC 2 cut(s) 41, 127
HpyAV CCTTC 2 cut(s) 871, 1288
HpyCH4III ACNGT 4 cut(s) 529, 737, 1019, 1103
HpyCH4IV ACGT 2 cut(s) 432, 603
HpyCH4V TGCA 6 cut(s) 336, 466, 647, 845, 1085, 1116
HpyF10VI GCNNNNNNNGC 3 cut(s) 548, 557, 1256
HpyF3I CTNAG 1 cut(s) 1332
HpySE526I ACGT 2 cut(s) 432, 603
Hsp92II CATG 4 cut(s) 32, 535, 1138, 1274
Kzo9I GATC 3 cut(s) 475, 502, 1140
LmnI GCTCC 1 cut(s) 1270
Lsp1109I GCAGC 4 cut(s) 348, 551, 804, 807
LweI GCATC 3 cut(s) 232, 577, 1044
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 1247
MaeII ACGT 2 cut(s) 432, 603
MaeIII GTNAC 3 cut(s) 256, 1045, 1103
MalI GATC 3 cut(s) 477, 504, 1142
MboI GATC 3 cut(s) 475, 502, 1140
MfeI CAATTG 2 cut(s) 648, 662
MflI RGATCY 2 cut(s) 475, 502
MhlI GDGCHC 1 cut(s) 968
MlsI TGGCCA 1 cut(s) 1075
MluCI AATT 7 cut(s) 80, 356, 648, 662, 784, 1027, 1128
MluNI TGGCCA 1 cut(s) 1075
MlyI GAGTC 1 cut(s) 375
MmeI TCCRAC 2 cut(s) 979, 1004
Mox20I TGGCCA 1 cut(s) 1075
Mph1103I ATGCAT 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 1075
MseI TTAA 9 cut(s) 78, 156, 204, 470, 695, 783, 950, 1190, 1319
MslI CAYNNNNRTG 1 cut(s) 530
Msp20I TGGCCA 1 cut(s) 1075
MspA1I CMGCKG 3 cut(s) 542, 820, 1052
MspI CCGG 2 cut(s) 50, 215
MspR9I CCNGG 3 cut(s) 45, 215, 450
MunI CAATTG 2 cut(s) 648, 662
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 2 cut(s) 45, 450
MwoI GCNNNNNNNGC 3 cut(s) 548, 557, 1256
NciI CCSGG 1 cut(s) 215
NdeII GATC 3 cut(s) 475, 502, 1140
NlaIII CATG 4 cut(s) 32, 535, 1138, 1274
NlaIV GGNNCC 3 cut(s) 169, 762, 965
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 468
PceI AGGCCT 1 cut(s) 880
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 5 cut(s) 230, 300, 348, 445, 1306
PflFI GACNNNGTC 1 cut(s) 887
PflMI CCANNNNNTGG 1 cut(s) 998
PfoI TCCNGGA 2 cut(s) 213, 448
PkrI GCNGC 4 cut(s) 338, 541, 794, 822
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
PpuMI RGGWCCY 1 cut(s) 167
Psp1406I AACGTT 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 43, 448
PspGI CCWGG 2 cut(s) 43, 448
PspN4I GGNNCC 3 cut(s) 169, 762, 965
PspPI GGNCC 3 cut(s) 47, 167, 653
PspPPI RGGWCCY 1 cut(s) 167
PsuI RGATCY 2 cut(s) 475, 502
PsyI GACNNNGTC 1 cut(s) 887
PvuII CAGCTG 3 cut(s) 542, 820, 1052
RsaI GTAC 2 cut(s) 19, 387
RsaNI GTAC 2 cut(s) 18, 386
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 9 cut(s) 78, 156, 204, 470, 695, 783, 950, 1190, 1319
SatI GCNGC 4 cut(s) 337, 540, 793, 821
Sau3AI GATC 3 cut(s) 475, 502, 1140
Sau96I GGNCC 3 cut(s) 47, 167, 653
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 45, 215, 450
SduI GDGCHC 1 cut(s) 968
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 3 cut(s) 232, 577, 1044
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 3 cut(s) 47, 167, 653
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 3 cut(s) 162, 371, 824
SmoI CTYRAG 3 cut(s) 162, 371, 824
Sse9I AATT 7 cut(s) 80, 356, 648, 662, 784, 1027, 1128
SseBI AGGCCT 1 cut(s) 880
SsiI CCGC 1 cut(s) 800
SspMI CTAG 1 cut(s) 1247
StuI AGGCCT 1 cut(s) 880
StyD4I CCNGG 3 cut(s) 43, 213, 448
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 4 cut(s) 529, 737, 1019, 1103
TaiI ACGT 2 cut(s) 435, 606
TaqI TCGA 2 cut(s) 493, 1038
TasI AATT 7 cut(s) 80, 356, 648, 662, 784, 1027, 1128
TfiI GAWTC 5 cut(s) 230, 300, 348, 445, 1306
Tru1I TTAA 9 cut(s) 78, 156, 204, 470, 695, 783, 950, 1190, 1319
Tru9I TTAA 9 cut(s) 78, 156, 204, 470, 695, 783, 950, 1190, 1319
TscAI CASTG 2 cut(s) 1024, 1267
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 4 cut(s) 336, 539, 792, 820
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 1134, 1232, 1269
TspRI CASTG 2 cut(s) 1024, 1267
Tth111I GACNNNGTC 1 cut(s) 887
Van91I CCANNNNNTGG 1 cut(s) 998
VpaK11BI GGWCC 3 cut(s) 47, 167, 653
XapI RAATTY 2 cut(s) 356, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 1247
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.