Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007374

Physical Location & Seq

Genomic Coordinates Reverse (-)

19681211 .. 19686245

Gene Structure 5035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTACGCCTGGCTCCCAATCTTGTACGAAGAACCTCATCTACAACCCCTTCACCCTCACCCTCCTCTTTCAATTTCTCAGTATGTTTGTTGCTTCGAAACACTTTCCCTCAATGCCAACAAGGAGACCACCCTTTCCAGAAACGTTATTTTTCTTGGGGGTCGAAGGCGTCGAGCCCTAGCCTCTCCATATGGAGGCGCAGGAAAGAGATGGGGAAGGAGGGTCTTATCGCGGCTAAGGAGCTCAAGAGGCTCCGCTCCCATCCTCTCCGCCTCGACCAGTTCATACGCTCAAACGTGTCCCGCTTGCTCAAGTCCGATCTTATAGCTGTTCTCGCCGAGTTCCAGAGACAAGACCAGGTCTTTCTCTCCATGAAGATATATGATGTGGTGCGTAAAGAAATTTGGTATCGACCAGACATGTTCTTTTACAGGGACATGCTTATGATGCTTGGAAGAAACAAAAAGGTAGATGAAGCAAAGCAGGTTTGGGGAGATCTGAAGAGAGAGGAAGTTCTGTTTGATCAGCATACTTTTGGGGATATTATCAGGGCTTTTCTAGATAATGGATTGCCCTCGGAGGCAATGGAGATATATGATGAAATGAGACAATCTCCTGATCCCCCAATCTCACTGCCTTTTAGAGTAATATTGAAGGGGCTTCTTCCATACCCAGAATTGAGGGAGAAGGTGAAAGATGACTTCTTGGAGCTATTTCCTGATATGATCATCTATGACCCACCCGAAGACTTATTTGAAGATCAAGAATGTAAAACAGAAAATGAAGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

265

Amino Acids

31.13

Weight (kDa)

6.37

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62350 AT1G62350 AT1G62350
fragaria_vesca	FvH4_3g28730
malus_domestica	MD11G1184300.v1.1 MD11G1184600.v1.1
prunus_persica	Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1
pyrus_communis	pycom12g08820
rosa_chinensis	RchiOBHm_Chr5g0052331
rosa_laevigata	RLG00000034824
rosa_multiflora	Rmu_sc0000968.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028240
rosa_rugosa	Rorug05G0272700 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800
rosa_samantha	Rh5AG345300 Rh5BG356400 Rh5CG381700 Rh5DG371500
rosa_wichuraiana	Rw5G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	1 cut(s)	233
AciI	CCGC	4 cut(s)	233, 256, 271, 304
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	1 cut(s)	614
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	195
AflIII	ACRYGT	2 cut(s)	297, 420
AgsI	TTSAA	3 cut(s)	73, 655, 758
AjnI	CCWGG	2 cut(s)	9, 357
AluBI	AGCT	3 cut(s)	244, 329, 712
AluI	AGCT	3 cut(s)	244, 329, 712
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	120, 343, 601
AlwI	GGATC	1 cut(s)	614
ApoI	RAATTY	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	45, 51, 703
AsuII	TTCGAA	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	179, 246
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	2 cut(s)	205, 270
BciT130I	CCWGG	2 cut(s)	11, 359
BclI	TGATCA	2 cut(s)	523, 726
BcoDI	GTCTC	3 cut(s)	120, 343, 601
BfaI	CTAG	2 cut(s)	180, 560
BfuAI	ACCTGC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	11, 359
BmiI	GGNNCC	2 cut(s)	15, 254
BmrFI	CCNGG	2 cut(s)	11, 359
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	753
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	2 cut(s)	230, 296
BsaHI	GRCGYC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	11, 359
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	2 cut(s)	286, 449
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	3 cut(s)	120, 343, 601
BsmFI	GGGAC	2 cut(s)	286, 449
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	179, 246
Bsp143I	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
BspACI	CCGC	4 cut(s)	233, 256, 271, 304
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	15, 254
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	614
BspT104I	TTCGAA	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	120
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
BssNI	GRCGYC	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	11, 359
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	79, 237
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	6 cut(s)	322, 499, 526, 622, 729, 763
BstMAI	GTCTC	3 cut(s)	120, 343, 601
BstMBI	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 335, 448
BstNI	CCWGG	2 cut(s)	11, 359
BstNSI	RCATGY	2 cut(s)	424, 442
BstSCI	CCNGG	2 cut(s)	9, 357
BstUI	CGCG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	1 cut(s)	632
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	1 cut(s)	201
CseI	GACGC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	3 cut(s)	373, 421, 439
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	2 cut(s)	79, 237
DpnI	GATC	6 cut(s)	321, 498, 525, 621, 728, 762
DpnII	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	179, 246
Eco31I	GGTCTC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	9, 357
EcoT38I	GRGCYC	2 cut(s)	179, 246
FaeI	CATG	3 cut(s)	376, 424, 442
FaqI	GGGAC	2 cut(s)	286, 449
FatI	CATG	3 cut(s)	372, 420, 438
FauI	CCCGC	1 cut(s)	311
FauNDI	CATATG	1 cut(s)	191
FbaI	TGATCA	2 cut(s)	523, 726
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	2 cut(s)	179, 246
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	180, 560
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	234
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	376, 424, 442
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HphI	GGTGA	3 cut(s)	45, 51, 703
Hpy188I	TCNGA	3 cut(s)	319, 501, 580
Hpy188III	TCNNGA	7 cut(s)	139, 247, 346, 560, 617, 719, 764
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	5 cut(s)	60, 160, 211, 649, 682
HpyCH4IV	ACGT	2 cut(s)	145, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 335, 448
HpyF3I	CTNAG	2 cut(s)	79, 237
HpySE526I	ACGT	2 cut(s)	145, 297
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	376, 424, 442
HspAI	GCGC	1 cut(s)	199
Ksp22I	TGATCA	2 cut(s)	523, 726
Kzo9I	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
LmnI	GCTCC	5 cut(s)	19, 241, 258, 263, 709
LweI	GCATC	1 cut(s)	438
MabI	ACCWGGT	1 cut(s)	357
MaeI	CTAG	2 cut(s)	180, 560
MaeII	ACGT	2 cut(s)	145, 297
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	6 cut(s)	321, 498, 525, 621, 728, 762
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
MboII	GAAGA	7 cut(s)	42, 388, 468, 514, 656, 758, 770
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	179, 246
MluCI	AATT	3 cut(s)	73, 402, 677
MslI	CAYNNNNRTG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	11, 359
MvaI	CCWGG	2 cut(s)	11, 359
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	250, 335, 448
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
NlaIII	CATG	3 cut(s)	376, 424, 442
NlaIV	GGNNCC	2 cut(s)	15, 254
NmeAIII	GCCGAG	1 cut(s)	364
NspI	RCATGY	2 cut(s)	424, 442
NspV	TTCGAA	1 cut(s)	97
PciI	ACATGT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	235
PscI	ACATGT	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	246
Psp1406I	AACGTT	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	9, 357
PspGI	CCWGG	2 cut(s)	9, 357
PspN4I	GGNNCC	2 cut(s)	15, 254
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
PsuI	RGATCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	319, 496, 523, 619, 726, 760
ScrFI	CCNGG	2 cut(s)	11, 359
SduI	GDGCHC	2 cut(s)	179, 246
SexAI	ACCWGGT	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	245, 311
SmoI	CTYRAG	2 cut(s)	245, 311
Sse9I	AATT	3 cut(s)	73, 402, 677
SsiI	CCGC	4 cut(s)	233, 256, 271, 304
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	2 cut(s)	180, 560
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	9, 357
TaiI	ACGT	2 cut(s)	148, 300
TaqI	TCGA	5 cut(s)	97, 164, 173, 276, 412
TasI	AATT	3 cut(s)	73, 402, 677
TauI	GCSGC	1 cut(s)	236
TscAI	CASTG	1 cut(s)	639
TspDTI	ATGAA	4 cut(s)	274, 389, 489, 615
TspRI	CASTG	1 cut(s)	639
Tth111I	GACNNNGTC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	402
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	2 cut(s)	424, 442
XspI	CTAG	2 cut(s)	180, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.