Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007374

Physical Location & Seq

Genomic Coordinates Reverse (-)

55390703 .. 55395186

Gene Structure 4484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034824

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTACGCCTGGCTTCCAATATTCTACAAAGAAGCTCATCTAGAACCCTTGCATCATCTTGTGATTTCTCTTTGCAATTGTTAGTCCAACATATTTGCCCACAGCAACAAGACGATTTCCAGCACCAACAACGGAGTTGTTACTCTGGGCAGTCAAAGGCGTCGAGCCCTAGCCTCTCGATATGGAGGCGCAAGAAAGAGATGGGCAAGGAGGGCCTCATCGTCGCTAAGGAGCTCAAAAGGCTCCGCTCACAGCCCCTACGCCTCGATCGCTTCATACGCTCCCACGTGTCCCGGTTGCTCAAATCTGATCTTCTGGCTGTTCTTGCCGAGTTTCAGAGACAAGACCAGGTCTTTCTCTGTATGAAGATCTACAATGTGGTGCGCAAAGAGATTTGGTATCGACCAGACATGTTCTTTTACAGGGACATGCTTATGATGCTTGCAAGAAATAGAAAGGTGGATGAAGCAAAGCAAGTTTGGGAAGATTTGAAGGGGGAAGAAGTTTTGTTTGATCAGCATACTTTTGGGGATATTATTAGGGCTTTCCTAGAAAGTGAATTGCCCTTGGAAGCAATGGGTATATACGATGAAATGAGAAGATCTCCTGAACCCCCTATATCACTGGCATTTAGAGTTATATTGAAAGGGCTTCTTCCGTATCCAGAATTGCGGGAGAAGGTGAAAGCTGACTTCTTGGAGTTATTTCCAGATATGATTGTCTATGACCCCCCTGAAGATCTGTTTGAAGATCAAGAATGGAAAAGTGAAAGCAAAGATGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

263

Amino Acids

31.03

Weight (kDa)

6.47

Isoelectric Point (pI)

66.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62350 AT1G62350 AT1G62350
fragaria_vesca	FvH4_3g28730
malus_domestica	MD11G1184300.v1.1 MD11G1184600.v1.1
prunus_persica	Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1 Prupe.4G265100_v2.0.a1
pyrus_communis	pycom12g08820
rosa_chinensis	RchiOBHm_Chr5g0052331
rosa_laevigata	RLG00000034824
rosa_multiflora	Rmu_sc0000968.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028240
rosa_rugosa	Rorug05G0272700 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800 Rorug05G0272800
rosa_samantha	Rh5AG345300 Rh5BG356400 Rh5CG381700 Rh5DG371500
rosa_wichuraiana	Rw5G032590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	386
AccBSI	CCGCTC	1 cut(s)	249
AciI	CCGC	2 cut(s)	247, 673
AcuI	CTGAAG	1 cut(s)	756
AcvI	CACGTG	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	161
AflIII	ACRYGT	2 cut(s)	288, 411
AgsI	TTSAA	3 cut(s)	493, 646, 749
AjnI	CCWGG	2 cut(s)	9, 348
AluBI	AGCT	3 cut(s)	36, 235, 689
AluI	AGCT	3 cut(s)	36, 235, 689
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	192, 387
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	694
BanII	GRGCYC	2 cut(s)	170, 237
BbrPI	CACGTG	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	237
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	11, 350
BciVI	GTATCC	1 cut(s)	672
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	3 cut(s)	42, 171, 551
BfuI	GTATCC	1 cut(s)	672
BglII	AGATCT	3 cut(s)	369, 602, 739
Bme1390I	CCNGG	3 cut(s)	11, 295, 350
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	3 cut(s)	11, 295, 350
BmsI	GCATC	2 cut(s)	62, 429
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
Bpu10I	CCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	567
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	11, 350
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	2 cut(s)	277, 440
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	277, 440
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	170, 237
Bsp143I	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
BspACI	CCGC	2 cut(s)	247, 673
BspANI	GGCC	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	11, 350
BstACI	GRCGYC	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	192, 387
BstKTI	GATC	7 cut(s)	271, 313, 372, 517, 605, 742, 754
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	6 cut(s)	213, 241, 270, 279, 326, 439
BstNI	CCWGG	2 cut(s)	11, 350
BstNSI	RCATGY	2 cut(s)	415, 433
BstSCI	CCNGG	3 cut(s)	9, 293, 348
BstX2I	RGATCY	3 cut(s)	369, 602, 739
BstYI	RGATCY	3 cut(s)	369, 602, 739
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	2 cut(s)	192, 387
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	348
CviAII	CATG	2 cut(s)	412, 430
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	7 cut(s)	270, 312, 371, 516, 604, 741, 753
DpnII	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	170, 237
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	756
Eco72I	CACGTG	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	9, 348
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	2 cut(s)	170, 237
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	415, 433
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	2 cut(s)	277, 440
FatI	CATG	2 cut(s)	411, 429
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	1 cut(s)	514
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	2 cut(s)	170, 237
FspBI	CTAG	3 cut(s)	42, 171, 551
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	2 cut(s)	191, 386
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	295
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	2 cut(s)	192, 387
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	415, 433
Hin6I	GCGC	2 cut(s)	190, 385
HinP1I	GCGC	2 cut(s)	190, 385
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	1 cut(s)	694
Hpy188I	TCNGA	2 cut(s)	310, 339
Hpy188III	TCNNGA	6 cut(s)	42, 178, 608, 665, 710, 755
Hpy99I	CGWCG	2 cut(s)	166, 227
HpyAV	CCTTC	2 cut(s)	487, 673
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	53, 76, 446
HpyF10VI	GCNNNNNNNGC	6 cut(s)	213, 241, 270, 279, 326, 439
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	415, 433
HspAI	GCGC	2 cut(s)	190, 385
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
LmnI	GCTCC	3 cut(s)	232, 249, 287
LweI	GCATC	2 cut(s)	62, 429
MabI	ACCWGGT	1 cut(s)	348
MaeI	CTAG	3 cut(s)	42, 171, 551
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	3, 140
MalI	GATC	7 cut(s)	270, 312, 371, 516, 604, 741, 753
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
MboII	GAAGA	8 cut(s)	305, 379, 497, 512, 612, 647, 749, 761
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	3 cut(s)	369, 602, 739
MhlI	GDGCHC	2 cut(s)	170, 237
MluCI	AATT	3 cut(s)	77, 560, 668
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	180, 185, 205, 227, 275
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	3 cut(s)	11, 295, 350
MunI	CAATTG	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	11, 350
MwoI	GCNNNNNNNGC	6 cut(s)	213, 241, 270, 279, 326, 439
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
NlaIII	CATG	2 cut(s)	415, 433
NlaIV	GGNNCC	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	386
NspI	RCATGY	2 cut(s)	415, 433
PciI	ACATGT	1 cut(s)	411
PflFI	GACNNNGTC	1 cut(s)	350
Ple19I	CGATCG	1 cut(s)	271
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	289
PscI	ACATGT	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	9, 348
PspCI	CACGTG	1 cut(s)	289
PspGI	CCWGG	2 cut(s)	9, 348
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	3 cut(s)	369, 602, 739
PsyI	GACNNNGTC	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	237
Sau3AI	GATC	7 cut(s)	268, 310, 369, 514, 602, 739, 751
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	11, 295, 350
SduI	GDGCHC	2 cut(s)	170, 237
SetI	ASST	7 cut(s)	38, 237, 291, 354, 462, 684, 691
SexAI	ACCWGGT	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	62, 429
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	77, 560, 668
SsiI	CCGC	2 cut(s)	247, 673
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	3 cut(s)	42, 171, 551
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	9, 293, 348
StyI	CCWWGG	1 cut(s)	567
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	4 cut(s)	164, 179, 267, 403
TasI	AATT	3 cut(s)	77, 560, 668
TscAI	CASTG	1 cut(s)	630
TspDTI	ATGAA	4 cut(s)	265, 380, 480, 606
TspGWI	ACGGA	2 cut(s)	148, 648
TspRI	CASTG	1 cut(s)	630
Tth111I	GACNNNGTC	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	2 cut(s)	415, 433
XspI	CTAG	3 cut(s)	42, 171, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.