AT1G62840

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013984
Physical Location & Seq
Forward (+)
23271416 .. 23272578
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62840.1

Sequence Viewer

Length: 675 bp
ATGAAATTGATTTGGTCACCGGAAACTGCATCAAAGGCTTACATCGACACCGTTAAATCGTGTGAAAATCTTGGAACGCCGGGAGCGGCGGAGCTAGTGGCGGCGATGGCAGCAGGATGGAACGCCAATTTGATTGTGGAAACATGGTCAGAAGGAGAAACTATAGCCATAAGCGTTGGCTTAAACATAGCGAGTCGACACACAAACGGAAGACACATTTGTATAGTACCAAACGCAAGATCACAAACTGCTTATCTTCAAGCCATGGCAGAACAATCTTGCTCAAACTTGCCGGAGACGATTATTATGAACGAGGAAGGAGAGGAATTGGAGCACACGATGCAGACGCTACAAGGAATCGATTTCTTGGTAGTTGACTGGGATCAGAAGGATTTCGCAGCAAACGTTTTGAGAAACGCTGTGTTTGGTAGCAGAGGAGCTGTTGTGGTCTGCAGAAGCGGTTACCGAAGAAGCACTTCGTGTTTCAGTTGGACAAAAGCATTTAGTGACCGGAATGTTGTGAGAACAGTGACTCTTCCAGTTTCTGGTGGTCTAGAAATCGCTCATGTTGCCGCAGCAAGAAGCTCTGGGAAGAGTGATAATAACAGCAACAAAAGAAAATGGATCAAGCATTTTGATCAAAGATCAGGAGAAGAACATGTTATTCGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

224

Amino Acids

24.58

Weight (kDa)

7.01

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 224 3.2e-120 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12320 AT1G62840
fragaria_vesca FvH4_5g00680
prunus_persica Prupe.5G079600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0337631 RchiOBHm_Chr7g0201531
rosa_laevigata RLG00000003664 RLG00000033501
rosa_multiflora Rmu_sc0013887.1_g000001
rosa_roxburghii Rroxscaffold_3G00255240
rosa_rugosa Rorug07G0064700
rosa_samantha Rh6AG501400 Rh7AG191300 Rh7BG193600 Rh7CG202500 Rh7DG196500
rosa_wichuraiana Rw7G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 196
AciI CCGC 5 cut(s) 86, 89, 101, 459, 573
AclI AACGTT 1 cut(s) 405
AclWI GGATC 2 cut(s) 390, 632
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 545
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 3 cut(s) 94, 440, 585
AluI AGCT 3 cut(s) 94, 440, 585
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 2 cut(s) 390, 632
AlwNI CAGNNNCTG 1 cut(s) 545
ApeKI GCWGC 3 cut(s) 110, 398, 575
Asp700I GAANNNNTTC 2 cut(s) 392, 475
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 9
AsuII TTCGAA 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 122, 410, 587
BccI CCATC 2 cut(s) 100, 111
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 95, 554
BfmI CTRYAG 2 cut(s) 162, 451
BisI GCNGC 6 cut(s) 87, 102, 111, 399, 573, 576
BlsI GCNGC 6 cut(s) 88, 103, 112, 400, 574, 577
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 2 cut(s) 38, 330
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 217
Bpu14I TTCGAA 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 2 cut(s) 19, 510
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 383, 539
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 545
BseNI ACTGG 2 cut(s) 383, 539
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 3 cut(s) 122, 410, 587
BshVI ATCGAT 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 4 cut(s) 20, 80, 293, 511
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 667
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 5 cut(s) 239, 382, 624, 637, 644
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 5 cut(s) 86, 89, 101, 459, 573
BspDI ATCGAT 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 455
BspPI GGATC 2 cut(s) 390, 632
BspT104I TTCGAA 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 86
BsrI ACTGG 2 cut(s) 383, 539
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 5 cut(s) 239, 382, 624, 637, 644
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 52, 529
Bst6I CTCTTC 2 cut(s) 540, 587
BstAPI GCANNNNNTGC 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 667
BstDSI CCRYGG 1 cut(s) 264
BstEII GGTNACC 2 cut(s) 15, 461
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 5 cut(s) 242, 385, 627, 640, 647
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 5 cut(s) 239, 382, 624, 637, 644
BstMWI GCNNNNNNNGC 5 cut(s) 35, 107, 110, 340, 569
BstNSI RCATGY 1 cut(s) 662
BstPI GGTNACC 2 cut(s) 15, 461
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 2 cut(s) 162, 451
BstV1I GCAGC 3 cut(s) 122, 410, 587
BstV2I GAAGAC 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 360
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 360
CseI GACGC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 227
CviAII CATG 4 cut(s) 144, 265, 566, 659
CviJI RGCY 7 cut(s) 38, 94, 167, 180, 263, 440, 585
CviKI_1 RGCY 7 cut(s) 38, 94, 167, 180, 263, 440, 585
CviQI GTAC 1 cut(s) 227
DpnI GATC 5 cut(s) 241, 384, 626, 639, 646
DpnII GATC 5 cut(s) 239, 382, 624, 637, 644
DraIII CACNNNGTG 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 540, 587
EarI CTCTTC 2 cut(s) 540, 587
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 264
Eco91I GGTNACC 2 cut(s) 15, 461
EcoO65I GGTNACC 2 cut(s) 15, 461
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 4 cut(s) 147, 268, 569, 662
FaiI YATR 9 cut(s) 145, 164, 170, 188, 224, 266, 308, 567, 660
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FatI CATG 4 cut(s) 143, 264, 565, 658
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 6 cut(s) 87, 102, 111, 399, 573, 576
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 6 cut(s) 87, 102, 111, 399, 573, 576
FspBI CTAG 2 cut(s) 95, 554
GluI GCNGC 6 cut(s) 87, 102, 111, 399, 573, 576
HapII CCGG 4 cut(s) 20, 80, 293, 511
HgaI GACGC 1 cut(s) 355
Hin1II CATG 4 cut(s) 147, 268, 569, 662
HincII GTYRAC 2 cut(s) 197, 376
HindII GTYRAC 2 cut(s) 197, 376
HinfI GANTC 3 cut(s) 193, 357, 532
HpaII CCGG 4 cut(s) 20, 80, 293, 511
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 197, 376
Hpy188I TCNGA 2 cut(s) 151, 387
Hpy188III TCNNGA 2 cut(s) 554, 648
Hpy8I GTNNAC 2 cut(s) 197, 376
HpyAV CCTTC 3 cut(s) 146, 311, 382
HpyCH4III ACNGT 2 cut(s) 52, 529
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 3 cut(s) 29, 343, 453
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 107, 110, 340, 569
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 4 cut(s) 147, 268, 569, 662
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 5 cut(s) 239, 382, 624, 637, 644
LmnI GCTCC 4 cut(s) 83, 91, 331, 437
Lsp1109I GCAGC 3 cut(s) 122, 410, 587
LweI GCATC 2 cut(s) 38, 330
MaeI CTAG 2 cut(s) 95, 554
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 4 cut(s) 15, 461, 506, 529
MalI GATC 5 cut(s) 241, 384, 626, 639, 646
MbiI CCGCTC 1 cut(s) 86
MboI GATC 5 cut(s) 239, 382, 624, 637, 644
MboII GAAGA 6 cut(s) 222, 248, 480, 527, 604, 665
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 3 cut(s) 5, 127, 326
MlyI GAGTC 2 cut(s) 202, 526
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 3 cut(s) 307, 316, 428
MroXI GAANNNNTTC 2 cut(s) 392, 475
MseI TTAA 2 cut(s) 54, 182
MspI CCGG 4 cut(s) 20, 80, 293, 511
MspR9I CCNGG 1 cut(s) 81
MwoI GCNNNNNNNGC 5 cut(s) 35, 107, 110, 340, 569
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 264
NdeII GATC 5 cut(s) 239, 382, 624, 637, 644
NlaIII CATG 4 cut(s) 147, 268, 569, 662
NmuCI GTSAC 3 cut(s) 15, 506, 529
NspI RCATGY 1 cut(s) 662
NspV TTCGAA 1 cut(s) 667
PciI ACATGT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdmI GAANNNNTTC 2 cut(s) 392, 475
PfeI GAWTC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 545
PkrI GCNGC 6 cut(s) 88, 103, 112, 400, 574, 577
PleI GAGTC 2 cut(s) 201, 526
PpsI GAGTC 2 cut(s) 201, 526
PscI ACATGT 1 cut(s) 658
Psp1406I AACGTT 1 cut(s) 405
PspEI GGTNACC 2 cut(s) 15, 461
PstI CTGCAG 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 545
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SalI GTCGAC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 54, 182
SatI GCNGC 6 cut(s) 87, 102, 111, 399, 573, 576
Sau3AI GATC 5 cut(s) 239, 382, 624, 637, 644
SchI GAGTC 2 cut(s) 202, 526
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 336
SetI ASST 4 cut(s) 96, 408, 442, 587
SfaNI GCATC 2 cut(s) 38, 330
SfcI CTRYAG 2 cut(s) 162, 451
SfuI TTCGAA 1 cut(s) 667
Sse9I AATT 3 cut(s) 5, 127, 326
SsiI CCGC 5 cut(s) 86, 89, 101, 459, 573
SspMI CTAG 2 cut(s) 95, 554
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 52, 529
TaiI ACGT 1 cut(s) 408
TaqI TCGA 4 cut(s) 45, 196, 360, 667
TasI AATT 3 cut(s) 5, 127, 326
TauI GCSGC 3 cut(s) 89, 104, 575
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 2 cut(s) 54, 182
Tru9I TTAA 2 cut(s) 54, 182
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 3 cut(s) 15, 506, 529
TseI GCWGC 3 cut(s) 110, 398, 575
Tsp45I GTSAC 3 cut(s) 15, 506, 529
TspDTI ATGAA 2 cut(s) 17, 323
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 392, 475
XspI CTAG 2 cut(s) 95, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.