FvH4_5g00680

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013984
Physical Location & Seq
Forward (+)
400885 .. 402080
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00680.t1

Sequence Viewer

Length: 660 bp
ATGAAGCTACTTTGGTCACCTGACACAGCCACTAGAGCCTACATCGACACCGTTCGATCTTGCCAAGTTTTCAATGAATCCGGGGTGGCAGAGCTTGTTTCAGCCATGGCAGCAGGCTGGAACGCCAAGTTAATAGTCGAGACATGGTCACAAGGAGGAGCCATTGCAACCAGCATTGGTCTTGAAATCGCCAGCCGGCACACGGGCGGACGGCACGTGTGTGTAGTCTCGGACGAGAATGCAAGGTCAGAGTTCATCACGGCCATGAAAGAAGCAGCAGACATGAACCCAGAAGTGCTTGTTGGTGAGCCAGAGGAGGTCATGTCTCAGCTTGTAGGAATAGATTTCATGGTTGTGGATTGCAAGCGCAAAGACTATGCTAGGGTCTTAAGGCAGGCGAGGTTGAATCAGAGAGGTGCGGTTTTGGTTTGCAAGAATGCGAATTCGAAAAGCGATTCAGGTTTCAGATGGAGGAGTGTTATTGATTGTGGATCAAGAAGGGTGGTTAGGACTGTGTTCTTGCCTGTAGGGAAAGGGATAGATATGGCTCATGTATCCAGCAGTGGAGGGAATTCAGGATCGGGGTCGAGCAAAGTAGAGAAGAGATGGATCAAACACTATGATCAAAAATCTGGGGAGGAACATGTTATCAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

220

Amino Acids

23.97

Weight (kDa)

9.01

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 219 4.9e-94 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12320 AT1G62840
fragaria_vesca FvH4_5g00680
prunus_persica Prupe.5G079600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0337631 RchiOBHm_Chr7g0201531
rosa_laevigata RLG00000003664 RLG00000033501
rosa_multiflora Rmu_sc0013887.1_g000001
rosa_roxburghii Rroxscaffold_3G00255240
rosa_rugosa Rorug07G0064700
rosa_samantha Rh6AG501400 Rh7AG191300 Rh7BG193600 Rh7CG202500 Rh7DG196500
rosa_wichuraiana Rw7G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 207, 419
AclWI GGATC 3 cut(s) 499, 586, 617
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 2 cut(s) 442, 571
AcvI CACGTG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 202
AflII CTTAAG 1 cut(s) 388
AflIII ACRYGT 2 cut(s) 216, 643
AgsI TTSAA 3 cut(s) 73, 185, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 3 cut(s) 7, 94, 331
AluI AGCT 3 cut(s) 7, 94, 331
Alw26I GTCTC 3 cut(s) 134, 232, 330
AlwI GGATC 3 cut(s) 499, 586, 617
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 110, 275
ApoI RAATTY 2 cut(s) 442, 571
AspLEI GCGC 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 9, 317
AsuII TTCGAA 1 cut(s) 446
BbrPI CACGTG 1 cut(s) 217
BbvI GCAGC 2 cut(s) 122, 287
BccI CCATC 2 cut(s) 462, 600
BceAI ACGGC 2 cut(s) 227, 276
BciVI GTATCC 1 cut(s) 565
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 3 cut(s) 134, 232, 330
BfaI CTAG 2 cut(s) 33, 381
BfmI CTRYAG 1 cut(s) 525
BfrI CTTAAG 1 cut(s) 388
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 2 cut(s) 111, 276
BlsI GCNGC 2 cut(s) 112, 277
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 81, 105
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 81, 105
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 3 cut(s) 171, 329, 487
BseXI GCAGC 2 cut(s) 122, 287
BshFI GGCC 1 cut(s) 263
BsiSI CCGG 2 cut(s) 81, 196
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 3 cut(s) 134, 232, 330
BsmI GAATGC 2 cut(s) 244, 442
BsnI GGCC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 446
Bsp143I GATC 5 cut(s) 56, 491, 578, 609, 622
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 2 cut(s) 207, 419
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 3 cut(s) 499, 586, 617
BspT104I TTCGAA 1 cut(s) 446
BspTI CTTAAG 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 81, 105
BssMI GATC 5 cut(s) 56, 491, 578, 609, 622
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 52, 514
Bst6I CTCTTC 1 cut(s) 596
BstAFI CTTAAG 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 5 cut(s) 115, 193, 197, 365, 396
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 105
BstEII GGTNACC 1 cut(s) 15
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 5 cut(s) 59, 494, 581, 612, 625
BstMAI GTCTC 3 cut(s) 134, 232, 330
BstMBI GATC 5 cut(s) 56, 491, 578, 609, 622
BstMWI GCNNNNNNNGC 2 cut(s) 35, 110
BstNSI RCATGY 1 cut(s) 647
BstPI GGTNACC 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 122, 287
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 5 cut(s) 115, 193, 197, 365, 396
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 195
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 8 cut(s) 106, 144, 265, 283, 322, 349, 551, 644
DdeI CTNAG 1 cut(s) 327
DpnI GATC 5 cut(s) 58, 493, 580, 611, 624
DpnII GATC 5 cut(s) 56, 491, 578, 609, 622
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
EciI GGCGGA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 105
Eco72I CACGTG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 15
EcoO65I GGTNACC 1 cut(s) 15
EcoRI GAATTC 2 cut(s) 442, 571
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 647
FatI CATG 8 cut(s) 105, 143, 264, 282, 321, 348, 550, 643
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 111, 276
Fsp4HI GCNGC 2 cut(s) 111, 276
FspBI CTAG 2 cut(s) 33, 381
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 111, 276
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 81, 196
HhaI GCGC 1 cut(s) 369
Hin1II CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 647
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 3 cut(s) 77, 406, 455
HpaII CCGG 2 cut(s) 81, 196
HphI GGTGA 2 cut(s) 9, 317
Hpy188I TCNGA 5 cut(s) 232, 250, 411, 467, 653
Hpy188III TCNNGA 4 cut(s) 139, 182, 495, 576
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 2 cut(s) 52, 514
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 167, 242, 363, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 110
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 647
HspAI GCGC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 5 cut(s) 56, 491, 578, 609, 622
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 2 cut(s) 122, 287
MaeI CTAG 2 cut(s) 33, 381
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 15, 147
MalI GATC 5 cut(s) 58, 493, 580, 611, 624
MboI GATC 5 cut(s) 56, 491, 578, 609, 622
MboII GAAGA 1 cut(s) 613
MluCI AATT 2 cut(s) 442, 571
MnlI CCTC 8 cut(s) 149, 307, 310, 393, 407, 465, 560, 631
MroNI GCCGGC 1 cut(s) 195
MseI TTAA 2 cut(s) 131, 389
MslI CAYNNNNRTG 3 cut(s) 219, 263, 353
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 2 cut(s) 81, 196
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 2 cut(s) 244, 442
MwoI GCNNNNNNNGC 2 cut(s) 35, 110
NaeI GCCGGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 105
NdeII GATC 5 cut(s) 56, 491, 578, 609, 622
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 647
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 15, 147
NspI RCATGY 1 cut(s) 647
NspV TTCGAA 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 219
PciI ACATGT 1 cut(s) 643
PctI GAATGC 2 cut(s) 244, 442
PdiI GCCGGC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 77, 406, 455
PflFI GACNNNGTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 112, 277
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 1 cut(s) 643
PspCI CACGTG 1 cut(s) 217
PspEI GGTNACC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 145
RseI CAYNNNNRTG 3 cut(s) 219, 263, 353
SaqAI TTAA 2 cut(s) 131, 389
SatI GCNGC 2 cut(s) 111, 276
Sau3AI GATC 5 cut(s) 56, 491, 578, 609, 622
ScrFI CCNGG 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 446
SmiMI CAYNNNNRTG 3 cut(s) 219, 263, 353
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 2 cut(s) 442, 571
SsiI CCGC 2 cut(s) 207, 419
SspMI CTAG 2 cut(s) 33, 381
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 52, 514
TaiI ACGT 1 cut(s) 219
TaqI TCGA 5 cut(s) 45, 55, 138, 446, 587
TasI AATT 2 cut(s) 442, 571
TfiI GAWTC 3 cut(s) 77, 406, 455
Tru1I TTAA 2 cut(s) 131, 389
Tru9I TTAA 2 cut(s) 131, 389
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 15, 147
TseI GCWGC 2 cut(s) 110, 275
Tsp45I GTSAC 2 cut(s) 15, 147
TspDTI ATGAA 6 cut(s) 17, 90, 244, 281, 299, 337
TspRI CASTG 1 cut(s) 568
Tth111I GACNNNGTC 1 cut(s) 145
Vha464I CTTAAG 1 cut(s) 388
XapI RAATTY 2 cut(s) 442, 571
XceI RCATGY 1 cut(s) 647
XspI CTAG 2 cut(s) 33, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.