Prupe.5G079600_v2.0.a1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013984
Physical Location & Seq
Forward (+)
9355315 .. 9356787
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G079600.1

Sequence Viewer

Length: 651 bp
ATGAAGCTGATTTGGTCTCCTGAGAATGCAACCAAGGCCTACATCGACACCGTTCGATCTTGTGAGGTTTTTCATGAATCTGGGGTTGCAGAGCTCATTTCAGCCATGGCTGCCGGGTGGAACGCAGAGTTCATCGTTGAGACATGGTCGCAAGGAGGGGTCACTGCAACAAGCATCGGGCTTGAAATCGCCAGCCGCCACACGTGCGGACGGCACGTGTGTGTAGTCCCAGATGAGCAGTCAAGGTCAGAATTTGTGGCAGCAATGAAAGAGGCAGGGATGGCTCCGGAGGTTCTTGTTGGGGAGCCAGAGGAGGTGATGGCCGGGCTTGTGGGGATAGATTTTCTGGTGGTGGATTCTAAGCGCAAAGACTTTGCTAGGGTTTTGAGGCAGGCAAGGCTGAGCCCTAGGGGCGCAGTTTTGGTGTGCAAAAATGCTAATTCAAGAAGTGCTTCTAGTTTCAGATGGAGAAGTGTTGTTGATTGTGGGTCAAGACGTGTGGTTAGGTCTGTGTTTTTGCCTGTAGGGAAGGGTCTGGATATGGCTCATGTGTCTAGCAGTGGAGGGAATTTAGGGTCAAGCAAGGGGGAGAATAGATGGGTTAAGCATTTTGATCAACAATCTGGGGAAGAACATGTTATCAGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

217

Amino Acids

23.52

Weight (kDa)

8.31

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12320 AT1G62840
fragaria_vesca FvH4_5g00680
prunus_persica Prupe.5G079600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0337631 RchiOBHm_Chr7g0201531
rosa_laevigata RLG00000003664 RLG00000033501
rosa_multiflora Rmu_sc0013887.1_g000001
rosa_roxburghii Rroxscaffold_3G00255240
rosa_rugosa Rorug07G0064700
rosa_samantha Rh6AG501400 Rh7AG191300 Rh7BG193600 Rh7CG202500 Rh7DG196500
rosa_wichuraiana Rw7G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 2 cut(s) 196, 207
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 251, 568
AcvI CACGTG 2 cut(s) 204, 217
AflIII ACRYGT 4 cut(s) 201, 216, 496, 634
AgsI TTSAA 2 cut(s) 185, 444
AjiI CACGTC 1 cut(s) 497
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 2 cut(s) 7, 94
AluI AGCT 2 cut(s) 7, 94
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 21, 134
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 2 cut(s) 36, 321
ApeKI GCWGC 2 cut(s) 110, 260
ApoI RAATTY 2 cut(s) 251, 568
Asp700I GAANNNNTTC 1 cut(s) 451
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 2 cut(s) 366, 416
AsuC2I CCSGG 2 cut(s) 115, 325
AsuHPI GGTGA 1 cut(s) 328
AvrII CCTAGG 1 cut(s) 407
BanII GRGCYC 2 cut(s) 96, 407
BbrPI CACGTG 2 cut(s) 204, 217
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 97, 272
BccI CCATC 4 cut(s) 274, 313, 459, 591
BceAI ACGGC 1 cut(s) 227
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 2 cut(s) 115, 325
BcoDI GTCTC 2 cut(s) 21, 134
BfaI CTAG 4 cut(s) 378, 408, 456, 555
BfmI CTRYAG 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 3 cut(s) 111, 196, 261
BlnI CCTAGG 1 cut(s) 407
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 3 cut(s) 112, 197, 262
Bme1390I CCNGG 2 cut(s) 115, 325
BmgBI CACGTC 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 285, 306
BmrFI CCNGG 2 cut(s) 115, 325
BmsI GCATC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 115, 325
BsaAI YACGTR 2 cut(s) 204, 217
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 33, 105, 407
BsaWI WCCGGW 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 286
BseDI CCNNGG 3 cut(s) 33, 105, 407
BseGI GGATG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 12, 392
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 2 cut(s) 97, 272
BshFI GGCC 2 cut(s) 38, 323
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 114, 287, 324
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 21, 134
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 2 cut(s) 38, 323
Bso31I GGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 96, 407
Bsp13I TCCGGA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 56, 613
Bsp1720I GCTNAGC 1 cut(s) 401
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 2 cut(s) 196, 207
BspANI GGCC 2 cut(s) 38, 323
BspCNI CTCAG 2 cut(s) 13, 393
BspEI TCCGGA 1 cut(s) 286
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 285, 306
BspTNI GGTCTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 270
BssECI CCNNGG 3 cut(s) 33, 105, 407
BssMI GATC 2 cut(s) 56, 613
BssT1I CCWWGG 3 cut(s) 33, 105, 407
Bst4CI ACNGT 1 cut(s) 52
BstBAI YACGTR 2 cut(s) 204, 217
BstC8I GCNNGC 2 cut(s) 193, 393
BstDEI CTNAG 3 cut(s) 21, 360, 401
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 285
BstHHI GCGC 2 cut(s) 366, 416
BstKTI GATC 2 cut(s) 59, 616
BstMAI GTCTC 2 cut(s) 21, 134
BstMBI GATC 2 cut(s) 56, 613
BstMWI GCNNNNNNNGC 6 cut(s) 35, 110, 204, 281, 397, 411
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 113, 323
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 97, 272
BsuRI GGCC 2 cut(s) 38, 323
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 2 cut(s) 162, 565
BtsIMutI CAGTG 2 cut(s) 162, 565
Cac8I GCNNGC 2 cut(s) 193, 393
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 366, 416
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 5 cut(s) 74, 106, 144, 548, 635
DdeI CTNAG 3 cut(s) 21, 360, 401
DpnI GATC 2 cut(s) 58, 615
DpnII GATC 2 cut(s) 56, 613
EaeI YGGCCR 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 3 cut(s) 33, 105, 407
Eco147I AGGCCT 1 cut(s) 38
Eco24I GRGCYC 2 cut(s) 96, 407
Eco31I GGTCTC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 94
Eco72I CACGTG 2 cut(s) 204, 217
EcoICRI GAGCTC 1 cut(s) 94
EcoT14I CCWWGG 3 cut(s) 33, 105, 407
EcoT38I GRGCYC 2 cut(s) 96, 407
ErhI CCWWGG 3 cut(s) 33, 105, 407
FaeI CATG 5 cut(s) 77, 109, 147, 551, 638
FaiI YATR 6 cut(s) 75, 107, 145, 542, 549, 636
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 1 cut(s) 212
FatI CATG 5 cut(s) 73, 105, 143, 547, 634
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 111, 196, 261
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 2 cut(s) 96, 407
Fsp4HI GCNGC 3 cut(s) 111, 196, 261
FspBI CTAG 4 cut(s) 378, 408, 456, 555
GlaI GCGC 2 cut(s) 365, 415
GluI GCNGC 3 cut(s) 111, 196, 261
HaeIII GGCC 2 cut(s) 38, 323
HapII CCGG 3 cut(s) 114, 287, 324
HhaI GCGC 2 cut(s) 366, 416
Hin1II CATG 5 cut(s) 77, 109, 147, 551, 638
Hin6I GCGC 2 cut(s) 364, 414
HinP1I GCGC 2 cut(s) 364, 414
HinfI GANTC 2 cut(s) 77, 356
HpaII CCGG 3 cut(s) 114, 287, 324
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 250, 464, 644
Hpy188III TCNNGA 6 cut(s) 20, 74, 287, 444, 492, 536
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 3 cut(s) 203, 216, 496
HpyCH4V TGCA 4 cut(s) 29, 89, 167, 429
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 110, 204, 281, 397, 411
HpyF3I CTNAG 3 cut(s) 21, 360, 401
HpySE526I ACGT 3 cut(s) 203, 216, 496
Hsp92II CATG 5 cut(s) 77, 109, 147, 551, 638
HspAI GCGC 2 cut(s) 364, 414
Kpn2I TCCGGA 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 2 cut(s) 56, 613
LmnI GCTCC 2 cut(s) 289, 304
Lsp1109I GCAGC 2 cut(s) 97, 272
LweI GCATC 1 cut(s) 183
MaeI CTAG 4 cut(s) 378, 408, 456, 555
MaeII ACGT 3 cut(s) 203, 216, 496
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 58, 615
MboI GATC 2 cut(s) 56, 613
MboII GAAGA 1 cut(s) 641
MhlI GDGCHC 2 cut(s) 96, 407
MluCI AATT 3 cut(s) 251, 439, 568
MnlI CCTC 8 cut(s) 58, 149, 265, 283, 304, 307, 381, 557
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 3 cut(s) 114, 287, 324
MspR9I CCNGG 2 cut(s) 115, 325
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 6 cut(s) 35, 110, 204, 281, 397, 411
NciI CCSGG 2 cut(s) 115, 325
NcoI CCATGG 1 cut(s) 105
NdeII GATC 2 cut(s) 56, 613
NlaIII CATG 5 cut(s) 77, 109, 147, 551, 638
NlaIV GGNNCC 2 cut(s) 285, 306
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 638
OliI CACNNNNGTG 1 cut(s) 219
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 38
PciI ACATGT 1 cut(s) 634
PctI GAATGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 77, 356
PflFI GACNNNGTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 112, 197, 262
PmaCI CACGTG 2 cut(s) 204, 217
PmlI CACGTG 2 cut(s) 204, 217
Ppu21I YACGTR 2 cut(s) 204, 217
PscI ACATGT 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 96
PspCI CACGTG 2 cut(s) 204, 217
PspN4I GGNNCC 2 cut(s) 285, 306
PsyI GACNNNGTC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 3 cut(s) 111, 196, 261
Sau3AI GATC 2 cut(s) 56, 613
ScrFI CCNGG 2 cut(s) 115, 325
SduI GDGCHC 2 cut(s) 96, 407
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 3 cut(s) 251, 439, 568
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 2 cut(s) 196, 207
SspMI CTAG 4 cut(s) 378, 408, 456, 555
SstI GAGCTC 1 cut(s) 96
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 113, 323
StyI CCWWGG 3 cut(s) 33, 105, 407
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 3 cut(s) 206, 219, 499
TaqI TCGA 2 cut(s) 45, 55
TasI AATT 3 cut(s) 251, 439, 568
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 2 cut(s) 77, 356
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 2 cut(s) 169, 565
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 110, 260
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 17, 62, 90, 121, 281
TspRI CASTG 2 cut(s) 169, 565
Tth111I GACNNNGTC 1 cut(s) 145
XapI RAATTY 2 cut(s) 251, 568
XceI RCATGY 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 4 cut(s) 378, 408, 456, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.