RLG00000033501

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013984
Physical Location & Seq
Forward (+)
28158429 .. 28159245
817 bp
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UTR
Exon/CDS
Intron
RLM00000033501

Sequence Viewer

Length: 459 bp
ATGGCTAGAGCAACAAAGAGATGGCTAGAGCAAAGGGCCGTACTCCTTAAGGTCGATGTCGTACTCCTTCAGCTCCGGCTTCGTCGGGTTATCGGGGCACCAAGAAATATGCTCAGGGCACCAATCTCCAAATCCAACACCTTCGATCTCCAACAGCAGCACCTCTCTGCCCAATTGATTATTTGTAGTGCCATCGGTATTCAATCGTACCATTCATCCGTTCAAGAAATGTGTGACCATATCACTTGTATCATTTCGAACATGAACCCAGAAGTGCTTGTTGGTGAGCCAGAGGAGGTCATGTCTGAGCTTATGGTAATAGATTTCATGGTTGTGGATTGCAAGCACAAAGACTATGCCAGGGTTCGAAGGCAGGCTAGGTTGAATCAAAGTGGTGCGTCTTGGTTTGCAAAAATGCCAACTCGAAAAGCAATTCTGGTTTCAAATGGAGGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

9.63

Isoelectric Point (pI)

67.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 41 - 145 1.8e-09 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12320 AT1G62840
fragaria_vesca FvH4_5g00680
prunus_persica Prupe.5G079600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0337631 RchiOBHm_Chr7g0201531
rosa_laevigata RLG00000003664 RLG00000033501
rosa_multiflora Rmu_sc0013887.1_g000001
rosa_roxburghii Rroxscaffold_3G00255240
rosa_rugosa Rorug07G0064700
rosa_samantha Rh6AG501400 Rh7AG191300 Rh7BG193600 Rh7CG202500 Rh7DG196500
rosa_wichuraiana Rw7G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 118
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 3 cut(s) 42, 63, 209
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 4 cut(s) 203, 224, 385, 444
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 2 cut(s) 73, 310
AluI AGCT 2 cut(s) 73, 310
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 2 cut(s) 257, 367
BaeGI GKGCMC 2 cut(s) 100, 121
BanI GGYRCC 2 cut(s) 97, 118
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 15, 200
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 361
BfaI CTAG 3 cut(s) 6, 26, 378
BfrI CTTAAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 99, 120
BmrFI CCNGG 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 2 cut(s) 257, 367
BsaJI CCNNGG 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 215
BseMII CTCAG 2 cut(s) 127, 297
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 2 cut(s) 100, 121
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 97, 118
BsiSI CCGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 38
Bsp119I TTCGAA 2 cut(s) 257, 367
Bsp1286I GDGCHC 2 cut(s) 100, 121
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 126, 298
BspLI GGNNCC 2 cut(s) 99, 120
BspT104I TTCGAA 2 cut(s) 257, 367
BspT107I GGYRCC 2 cut(s) 97, 118
BspTI CTTAAG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 361
BstAFI CTTAAG 1 cut(s) 47
BstBI TTCGAA 2 cut(s) 257, 367
BstC8I GCNNGC 2 cut(s) 344, 375
BstDEI CTNAG 2 cut(s) 113, 306
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 2 cut(s) 100, 121
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 215
Cac8I GCNNGC 2 cut(s) 344, 375
Cfr13I GGNCC 1 cut(s) 36
CseI GACGC 1 cut(s) 387
Csp6I GTAC 3 cut(s) 41, 62, 208
CviAII CATG 3 cut(s) 262, 301, 328
CviJI RGCY 8 cut(s) 5, 25, 38, 73, 79, 289, 310, 377
CviKI_1 RGCY 8 cut(s) 5, 25, 38, 73, 79, 289, 310, 377
CviQI GTAC 3 cut(s) 41, 62, 208
DdeI CTNAG 2 cut(s) 113, 306
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 359
FaeI CATG 3 cut(s) 265, 304, 331
FaiI YATR 7 cut(s) 110, 240, 263, 302, 314, 329, 357
FatI CATG 3 cut(s) 261, 300, 327
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 3 cut(s) 6, 26, 378
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 387
Hin1II CATG 3 cut(s) 265, 304, 331
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 3 cut(s) 77, 151, 363
HpyCH4V TGCA 2 cut(s) 342, 410
HpyF3I CTNAG 2 cut(s) 113, 306
Hsp92II CATG 3 cut(s) 265, 304, 331
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 8 cut(s) 89, 100, 282, 303, 346, 359, 373, 422
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 3 cut(s) 6, 26, 378
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MfeI CAATTG 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 100, 121
MluCI AATT 2 cut(s) 173, 432
MmeI TCCRAC 2 cut(s) 159, 175
MnlI CCTC 4 cut(s) 173, 286, 289, 443
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 332
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 361
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 265, 304, 331
NlaIV GGNNCC 2 cut(s) 99, 120
NmuCI GTSAC 1 cut(s) 233
NspV TTCGAA 2 cut(s) 257, 367
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 99, 120
PspPI GGNCC 1 cut(s) 36
RsaI GTAC 3 cut(s) 42, 63, 209
RsaNI GTAC 3 cut(s) 41, 62, 208
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 2 cut(s) 100, 121
SetI ASST 7 cut(s) 54, 75, 143, 165, 300, 312, 383
SfuI TTCGAA 2 cut(s) 257, 367
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 173, 432
SspMI CTAG 3 cut(s) 6, 26, 378
StyD4I CCNGG 1 cut(s) 359
TaqI TCGA 5 cut(s) 54, 144, 257, 367, 424
TasI AATT 2 cut(s) 173, 432
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 204, 278, 316
TspGWI ACGGA 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 47
XspI CTAG 3 cut(s) 6, 26, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.